Ryo YOSHIDA

J-GLOBAL         Last updated: Mar 15, 2017 at 02:55
 
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Name
Ryo YOSHIDA
URL
http://daweb.ism.ac.jp/yoshidalab/index_e.html
Affiliation
Research Organization of Information and Systems
Section
The Institute of Statistical Mathematics
Job title
Associate Professor

Published Papers

 
Tokunaga, Terumasa The Institute of Statistical Mathematics, Hirose, Osamu Kanazawa University, Kawaguchi, Shoutarou Kanazawa University, Toyoshima, Yu University of Tokyo, Teramoto, Takayuki Kyushu University, Ikebata, Hisaki 総合研究大学院大学, Kuge, Sayuri Kyushu University, Ishihara, Takeshi Kyushu University, Iino, Yuichi University of Tokyo, Yoshida, Ryo The Institute of Statistical Mathematics
Bioinformatics   30:12 i43-i51   Jun 2014   [Refereed]
Yamashita, Hiroshi 総合研究大学院大学, Higuchi, Tomoyuki The Institute of Statistical Mathematics, Yoshida, Ryo The Institute of Statistical Mathematics
Journal of Chemical Information and Modeling   54:5 1289-1300   May 2014   [Refereed]
データ同化によって線虫の神経系をまるごと読み解く~現状と課題
徳永 旭将 統計数理研究所, 吉田 亮 統計数理研究所, 岩崎 唯史 茨城大学
シミュレーション   32巻(4号) 31-38   Dec 2013   [Refereed]
Yamauchi, Mai 東京大学医科学研究所, Yamaguchi, Rui 東京大学医科学研究所, Nakata, Asuka 東京大学医科学研究所, Kohno, Takashi 国立がん研究センター, Nagasaki, Masao 東京大学医科学研究所, Shimamura, Teppei 東京大学医科学研究所, Imoto, Seiya 東京大学医科学研究所, Saito, Ayumu 東京大学医科学研究所, Ueno, Kazuko 東京大学医科学研究所, Hatanaka, Yousuke 東京大学医科学研究所, Yoshida, Ryo 統計数理研究所, Higuchi, Tomoyuki 統計数理研究所, Nomura, Masaharu 東京医科大学, Beer, David Comprehensive Cancer Center,University of Michigan, Yokota, Jun 国立がん研究センター, Miyano, Satoru 東京大学医科学研究所, Gotoh, Noriko 東京大学医科学研究所
PLoS One   7(9) e43923   Sep 2012   [Refereed]
Kawano, Shuichi 大阪府立大学, Shimamura, Teppei 東京大学医科学研究所, Niida, Atsushi 東京大学医科学研究所, Imoto, Seiya 東京大学医科学研究所, Yamaguchi, Rui 東京大学医科学研究所, Nagasaki, Masao 東京大学医科学研究所, Yoshida, Ryo 統計数理研究所, Print, Cristin Univ. of Auckland, Miyano, Satoru 東京大学医科学研究所
IEEE/ACM Transactions on Computational Biology and Bioinformatics   9(4) 966-972   Jul 2012   [Refereed]
SiGN-SSM: open source parallel software for estimating gene networks with state space models
Tamada, Yoshinori The University of Tokyo, Yamaguchi, Rui Institute of Medical Science, The University of Tokyo, Imoto, Seiya Institute of Medical Science, The University of Tokyo, Hirose, Osamu The University of Tokyo, Nagasaki, Masao Institute of Medical Science, The University of Tokyo, Miyano, Satoru Institute of Medical Science, The University of Tokyo
Bioinformatics   27 1172-1173   Apr 2011   [Refereed]
Bayesian experts in exploring reaction kinetics of transcription circuits
Yoshida, Ryo Institute of Statistical Mathematics, Masaya, Saito Institute of Statistical Mathematics, Hiromichi, Nagao Institute of Statistical Mathematics, Tomoyuki, Higuchi Institute of Statistical Mathematics
Bioinformatics   26 i589-i595   Oct 2010   [Refereed]
Bayesian learning in sparse graphical factor models via variational mean-field annealing
Yoshida, Ryo Institute of Statistical Mathematics, West, Mike Duke University
Journal of Machine Learning Research   11 1771-1798   Oct 2010   [Refereed]
A state space representation of VAR models with sparse learning for dynamic gene networks
Kojima, Kaname , Yamaguchi, Rui , Imoto, Seiya , Yamauchi, Mai , Nagasaki, Masao , Yoshida, Ryo , Shimamura, Teppei , Ueno, Kazuko , Higuchi, Tomoyuki , Gotoh, Noriko , Miyano, Satoru
Genome Informatics   22 56-68   2009   [Refereed]
細胞内生化学反応経路のグラフィカルモデリングと統計的推測手法の新展開
吉田 亮 , 樋口 知之
日本統計学会誌   38:2 213-236   2009   [Refereed]
Statistical absolute evaluation of gene ontology terms with gene expression data
Gupta, Pramod, K. Institute of Medical Science, University of Tokyo, Yoshida, Ryo Institute of Statistical Mathematics, Research Organization of Information and Systems , Imoto, Seiya Institute of Medical Science, University of Tokyo, Yamaguchi, Rui Institute of Medical Science, University of Tokyo, Miyano, Satoru Institute of Medical Science, University of Tokyo
Proceedings of 3rd International Symposium on Bioinformatics Research and Applications, Lecture Note in Bioinformatics, Springer-Verlag   4463 146-157   2007   [Refereed]
Finding module-based gene networks with state-space models - Mining high-dimensional and short time-course gene expression data
Yamaguchi, Rui Institute of Medical Science, University of Tokyo, Yoshida, Ryo Institute of Statistical Mathematics, Research Organization of Information and Systems , Imoto, Seiya Institute of Medical Science, University of Tokyo, Higuchi, Tomoyuki Institute of Statistical Mathematics, Research Organization of Information and Systems , Miyano, Satoru Institute of Medical Science, University of Tokyo
IEEE Signal Processing Magazine   24(1) 37-46   2007   [Refereed]
Identification of activated transcription factors from microarray gene expression data of Kampo-medicine treated mice
Yamaguchi, Rui Institute of Medical Science, University of Tokyo, Yamamoto, Masahiro , Imoto, Seiya Institute of Medical Science, University of Tokyo, Nagasaki, Masao Institute of Medical Science, University of Tokyo, Yoshida, Ryo Institute of Statistical Mathematics, Research Organization of Information and Systems , Tsuiji, Kenji , Ishige, Atsushi , Asou, Hiroaki , Watanabe, Kenji , Miyano, Satoru Institute of Medical Science, University of Tokyo
Genome Informatics   18 119-129   2007   [Refereed]
Clustering with time course gene expression profiles and the mixture of state space models
Hirose, Osamu Institute of Medical Science, University of Tokyo, Yoshida, Ryo Institute of Statistical Mathematics, Research Organization of Information and Systems , Yamaguchi, Rui Institute of Medical Science, University of Tokyo, Imoto, Seiya Institute of Medical Science, University of Tokyo, Higuchi, Tomoyuki Institute of Statistical Mathematics, Research Organization of Information and Systems , Miyano, Satoru Institute of Medical Science, University of Tokyo
Genome Informatics   18 258-266   2007   [Refereed]
Computational discovery of aberrant splice variations with genome-wide exon expression profiles
Yoshida, Ryo Institute of Statistical Mathematics, Research Organization of Information and Systems , Numata, Kazuyuki Institute of Medical Science, University of Tokyo, Imoto, Seiya Institute of Medical Science, University of Tokyo, Nagasaki, Masao Institute of Medical Science, University of Tokyo, Doi, Atsushi Institute of Medical Science, University of Tokyo, Ueno, Kazuko Institute of Medical Science, University of Tokyo, Miyano, Satoru Institute of Medical Science, University of Tokyo
Proceedings of IEEE 7th International Symposium on Bioinformatics and Bioengineering   715-722   2007   [Refereed]
Importance sampling with the estimated sampler
Hemmi, Masayuki Institute of Statistical Mathematics, Research Organization of Information and Systems , Yoshida, Ryo Institute of Statistical Mathematics, Research Organization of Information and Systems , Eguchi, Shinto Institute of Statistical Mathematics, Research Organization of Information and Systems
Biometrika   94 985-991   2007   [Refereed]

Books etc

 
データ同化入門―次世代のシミュレーション技術―
樋口 知之 統計数理研究所, 上野 玄太 統計数理研究所, 中村 和幸 明治大学, 中野 慎也 統計数理研究所, 吉田 亮 統計数理研究所
Sep 2011