Shin Ishii

Profile Information

Affiliation: Kyoto University

J-GLOBAL ID: 200901033722178541
researchmap Member ID: 1000223414

1988年東京大学大学院工学系研究科修了。工学博士。リコー中央研究所、ATR人間情報研究所、奈良先端科学技術大学院大学を経て、2007年7月より京都大学情報学研究科システム科学専攻教授。強化学習を中心とする機械学習を専門とし、近年は数理モデルを用いた生命システム学である、計算論的認知心理学、システム神経生物学、バイオインフォマティクスの研究にも取り組む。

Research Interests

Research Areas

Research History

Jul, 2007 - Present

教授, 京都大学情報学研究科
Apr, 2001 - Mar, 2010

Graduate School of Information Science, Nara Institute of Science and Technology
Apr, 1997 - Mar, 2001

Graduate School of Information Science, Nara Institute of Science and Technology

Misc.

MarmoNet: a pipeline for automated projection mapping of the common marmoset brain from whole-brain serial two-photon tomography

Skibbe, H, Watakabe, A, Nakae, K, Gutierrez, C.E, Tsukada, H, Hata, J, Kawase, T, Gong, R, Woodward, A, Doya, K …

arXiv preprint arXiv:1908.00876, abs/1908.00876, 2019
Robust Discriminative Tracking via Query-by-Bagging

Kourosh Meshgi, Shigeyuki Oba, Shin Ishii

2016 13TH IEEE INTERNATIONAL CONFERENCE ON ADVANCED VIDEO AND SIGNAL BASED SURVEILLANCE (AVSS), 8-14, 2016 Peer-reviewed
システム神経科学スプリングスクール2013開催報告

中江健, 本田直樹, 浦久保秀俊, 山尾将隆, 塚田祐基, 石井信

日本神経回路学会誌 = The Brain & neural networks, 20(2) 84-87, Jun 5, 2013
システム神経生物学スプリングスクール2012開催報告

本田直樹, 中江健, 行縄直人, 山尾将隆, 石井信

日本神経回路学会誌 = The Brain & neural networks, 19(2) 97-100, Jun 5, 2012
ネットワーク構造推定問題における同時多重性を考慮したグレンジャー因果推定の改良手法について (ニューロコンピューティング)

播磨輝, 大羽成征, 石井信

電子情報通信学会技術研究報告, 110(461) 301-306, Mar 7, 2011
Localizing focal current sources from MEG data based on state-space approach

Makoto Fukushima, Okito Yamashita, Atsunori Kanemura, Shin Ishii, Mitsuo Kawato, Masa-aki Sato

NEUROSCIENCE RESEARCH, 71 E290-E290, 2011
Neural representation of face perception in the fusiform face area

Manabu Shikauchi, Tomohiro Shibata, Shigeyuki Oba, Shin Ishii

Journal of Vision, 10(7) 667-667, 2010 Peer-reviewed
Restoration of 3d microscopic image stack by hierarchical estimation of diffusion tensor field

Shigeyuki Oba, Shin Ishii

NEUROSCIENCE RESEARCH, 68 E216-E217, 2010
Human brain image registration for diffusion MRI data and neuro-fiber categorization

Kevin C. Y. Chien, Shigeyuki Oba, Shin Ishii

NEUROSCIENCE RESEARCH, 68 E330-E330, 2010
Neuronal network structure estimation by a modification of Granger

Hikaru Harima, Shigeyuki Oba, Shin Ishii

NEUROSCIENCE RESEARCH, 68 E439-E439, 2010
ARD事前分布を用いた確率的マージン最大化行列因子化法の提案と欠測予測(神経ダイナミクス,一般)

古谷允宏, 大羽成征, 石井信

電子情報通信学会技術研究報告. NC, ニューロコンピューティング, 108(383) 19-24, Jan 12, 2009
Differential gene detection incorporating common expression pattern

Shigeyuki Oba, Shin Ishii

International Workshop on Statistical-Mechanical Informatics, 2009 Peer-reviewed
検定多重性とサンプル個性を利用した臨床ラベル関連遺伝子探索(機械学習によるバイオデータマインニング・生命現象の非線形性,機械学習によるバイオデータマインニング・生命現象の非線形性,一般)

大羽成征, 石井信

電子情報通信学会技術研究報告. NLP, 非線形問題, 108(102) 13-18, Jun 19, 2008
検定多重性とサンプル個性を利用した臨床ラベル関連遺伝子探索(3研究会合同企画セッション[1])

大羽成征, 石井信

情報処理学会研究報告. BIO, バイオ情報学, 2008(58) 37-42, Jun 19, 2008
実画像からの重なり合ったひも状オブジェクトの認識(機械学習,一般)

前田くれあ, 大羽成征, 行縄直人, 石井信

電子情報通信学会技術研究報告. NC, ニューロコンピューティング, 107(413) 115-120, Jan 8, 2008
Quantitative morphodynamic analysis of time-lapse imaging by edge evolution tracking

Yuki Tsukada, Yuichi Sakumura, Shin Ishii

NEURAL INFORMATION PROCESSING, PART II, 4985 817-826, 2008 Peer-reviewed
Bayesian Image Superresolution and Its Hierarchical Extensions

KANEMURA Atsunori, FUKUDA Wataru, MAEDA Shin-ichi, ISHII Shin

The Brain & Neural Networks, 15(3) 181-192, 2008
アレイ比較ゲノムデータ正規化手法Combfitについて(セッション1:『機械学習によるバイオデータマインニング』)

大羽成征, 富岡伸元, 大平美紀, 石井信

情報処理学会研究報告. BIO, バイオ情報学, 2007(60) 9-16, Jun 14, 2007
強化学習と脳における報酬系の情報処理(脳化学2,数学者のための分子生物学入門-新しい数学を造ろう-)

石井信, 柴田和久

物性研究, 87(3) 467-472, Dec 20, 2006
24OP1-22 アレイCGHと発現マイクロアレイを組み合わせた神経芽腫の新しいリスク分類の試み(ポスター NBL(基礎),第22回日本小児がん学会第48回日本小児血液学会第4回日本小児がん看護研究会同時期開催)

中川原章, 富岡伸元, 大羽成征, 中村洋子, 好田忠行, 吉田安子, 藤堂省, Burt Feuerstein, 石井信, 大平美紀

小児がん : 小児悪性腫瘍研究会記録, 43(3), Nov 24, 2006

Papers

126

The Brain/MINDS Marmoset Connectivity Resource: An open-access platform for cellular-level tracing and tractography in the primate brain

Henrik Skibbe, Muhammad Febrian Rachmadi, Ken Nakae, Carlos Enrique Gutierrez, Junichi Hata, Hiromichi Tsukada, Charissa Poon, Matthias Schlachter, Kenji Doya, Piotr Majka …

PLOS Biology, 21(6) e3002158-e3002158, Jun 29, 2023 Peer-reviewed
The critical balance between dopamine D2 receptor and RGS for the sensitive detection of a transient decay in dopamine signal.

Hidetoshi Urakubo, Sho Yagishita, Haruo Kasai, Yoshiyuki Kubota, Shin Ishii

PLoS computational biology, 17(9) e1009364, Sep, 2021
A Generalized Encoding System for Alpha Oscillations Through Visual Saliency Analysis

Zhen Liang, Fangchao Li, Wanrou Hu, Gan Huang, Shigeyuki Oba, Zhiguo Zhang, Shin Ishii

IEEE Transactions on Neural Systems and Rehabilitation Engineering, 28(12) 2731-2743, Dec, 2020
Computational Characteristics of the Striatal Dopamine System Described by Reinforcement Learning With Fast Generalization

Yoshihisa Fujita, Sho Yagishita, Haruo Kasai, Shin Ishii

Frontiers in Computational Neuroscience, 14 66-66, Jul 22, 2020 Peer-reviewed
Modularized Predictive Coding-Based Online Motion Synthesis Combining Environmental Constraints and Motion-Capture Data

Jaepyung Hwang, Shin Ishii, Taesoo Kwon, Shigeyuki Oba

IEEE Access, 8 202274-202285, 2020
The NanoZoomer artificial intelligence connectomics pipeline for tracer injection studies of the marmoset brain

Woodward, A., Gong, R., Abe, H., Nakae, K., Hata, J., Skibbe, H., Yamaguchi, Y., Ishii, S., Okano, H., Yamamori, T. …

Brain Structure and Function, 225(4), 2020
Mu-net: Multi-scale U-net for two-photon microscopy image denoising and restoration

Lee, S., Negishi, M., Urakubo, H., Kasai, H., Ishii, S.

Neural Networks, 125, 2020
EEG-based personal identification method using unsupervised feature extraction and its robustness against intra-subject variability

Nishimoto, T., Higashi, H., Morioka, H., Ishii, S.

Journal of Neural Engineering, 17(2), 2020
Generative and discriminative model-based approaches to microscopic image restoration and segmentation

Ishii, S., Lee, S., Urakubo, H., Kume, H., Kasai, H.

Microscopy, 69(2), 2020
Dopamine D2 receptors in discrimination learning and spine enlargement

Iino, Y., Sawada, T., Yamaguchi, K., Tajiri, M., Ishii, S., Kasai, H., Yagishita, S.

Nature, 579(7800), 2020
Brain Dynamics Encoding from Visual Input during Free Viewing of Natural Videos

Zhen Liang, Hiroshi Higashi, Shigeyuki Oba, Shin Ishii

2019 International Joint Conference on Neural Networks (IJCNN), Jul, 2019 Peer-reviewed
Online motion synthesis framework using a simple mass model based on predictive coding

Jaepyung Hwang, Shin Ishii, Shigeyuki Oba

Proceedings of the 18th annual ACM SIGGRAPH/Eurographics Symposium on Computer Animation - SCA '19, 2019 Peer-reviewed
Logical design of oral glucose ingestion pattern minimizing blood glucose in humans

Fujii, M., Murakami, Y., Karasawa, Y., Sumitomo, Y., Fujita, S., Koyama, M., Uda, S., Kubota, H., Inoue, H., Konishi, K. …

npj Systems Biology and Applications, 5(1), 2019
System level analysis of motor-related neural activities in larval Drosophila

Yoon, Y., Park, J., Taniguchi, A., Kohsaka, H., Nakae, K., Nonaka, S., Ishii, S., Nose, A.

Journal of Neurogenetics, 33(3), 2019
PAT - Probabilistic axon tracking for densely labeled neurons in large 3-D micrographs

Skibbe, H., Reisert, M., Nakae, K., Watakabe, A., Hata, J., Mizukami, H., Okano, H., Yamamori, T., Ishii, S.

IEEE Transactions on Medical Imaging, 38(1), 2019
Constrained deep Q-learning gradually approaching ordinary Q-learning

Ohnishi, S., Uchibe, E., Yamaguchi, Y., Nakanishi, K., Yasui, Y., Ishii, S.

Frontiers in Neurorobotics, 13, 2019
Noise-resistant developmental reproducibility in vertebrate somite formation

Naoki, H., Akiyama, R., Sari, D.W.K., Ishii, S., Bessho, Y., Matsui, T.

PLoS Computational Biology, 15(2), 2019
Virtual Adversarial Training: A Regularization Method for Supervised and Semi-Supervised Learning

Miyato, T., Maeda, S.-I., Koyama, M., Ishii, S.

IEEE Transactions on Pattern Analysis and Machine Intelligence, 41(8), 2019
An unsupervised EEG decoding system for human emotion recognition

Liang, Z., Oba, S., Ishii, S.

Neural Networks, 116, 2019
GABAergic inhibition reduces the impact of synaptic excitation on somatic excitation

Kobayashi, C., Okamoto, K., Mochizuki, Y., Urakubo, H., Funayama, K., Ishikawa, T., Kashima, T., Ouchi, A., Szymanska, A.F., Ishii, S. …

Neuroscience Research, 146, 2019

Research Projects

Generative adversarial brain: a comprehensive study of multi-agent learning by natural and artificial intelligence

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (S), Japan Society for the Promotion of Science, Apr, 2022 - Mar, 2027
敵対生成脳の計算理論と人工知能応用

科学研究費助成事業, 基盤研究(A), 日本学術振興会, Apr, 2022 - Mar, 2025

石井信, 森本淳, 雨森賢一, 吉田和子
脳の転移可能な機能単位からみる個性とメタ学習能力

科学研究費助成事業, 基盤研究(B), 日本学術振興会, Apr, 2019 - Mar, 2022

石井信
脳情報動態解明に資する多階層・多領野データ統合モデリング法の開発

科学研究費助成事業, 新学術領域研究(研究領域提案型), 日本学術振興会, Jun, 2017 - Mar, 2022

石井信, 山崎匡
Brain information dynamics underlying multi-area interconnectivity and parallel processing

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area), Japan Society for the Promotion of Science, Jun, 2017 - Mar, 2022
Decision making model based on hierarchical networks and its applications to brain machine interface

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2016 - Mar, 2019

Ishii Shin
Mesoscopic neurocircuitry: towards understanding of the functional and structual basis of brain information processing

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area), Japan Society for the Promotion of Science, Apr, 2010 - Mar, 2016

NOSE AKINAO, IKEGAYA Yuji, UEMURA Tadashi, HOSOYA Toshihiko, MATSUZAKI Masanori, KANEKO Takeshi, YAMAMOTO Nobuhiko, YAMANAKA Akihiro, YOSHIMURA Yumiko, KENGAKU Mineko, IWASATO Takuji, HATA Yoshio, SHIBUKI Katsuei, ISHII Shin, FUKAI Tomoki
Uncovering neural correlates in human decision making based on brain decoding

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2012 - Mar, 2015

ISHII Shin
A study of modular models of decision making in uncertain and non-stationary environments

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, 2009 - 2011

ISHII Shin, NAKAMURA Yutaka, MAEDA Shinichi, MORI Takeshi, OSHIO Ritz, SHIKAUCHI Yumi, MORIMOTO Satoshi
Reseach for stable bioinformatics method based on hierarchical Bayes inference.

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research on Priority Areas, Japan Society for the Promotion of Science, 2006 - 2009

ISHII Shin, MAEDA Shinichi, TAKENOUCHI Takashi, MORI Takeshi, MAEDA Shinichi, TAKENOUCHI Takashi, MORI Takeshi, HIRAYAMA Junichiro
Management Research on "Deepening and Expansion of Statistical Mechanical Informatics"

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research on Priority Areas, Japan Society for the Promotion of Science, 2006 - 2009

KABASHIMA Yoshiyuki, OKADA Masato, TANAKA Kazuyuki, TANAKA Toshiyuki, ISHII Shin, INOUE Junichi
Computational model of human decision-making in complicated environments and its applications

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, 2006 - 2008

ISHII Shin, SHIBATA Tomohiro, YOSHIDA Wako, NAKAMURA Yutaka, MORI Takeshi
細胞の形状変化と分子シグナルとの多次元相互作用に関する研究

科学研究費助成事業, 特定領域研究, 日本学術振興会, 2006 - 2007

石井信, 中村岳史, 作村勇一
癌遺伝子発現臨床情報データベースの開発

科学研究費助成事業, 特定領域研究, 日本学術振興会, 2005 - 2005

加藤菊也, 石井信
分子シグナルから細胞運動への統合的システム生物学に関する研究

科学研究費助成事業, 特定領域研究, 日本学術振興会, 2005 - 2005

石井信, 中村岳史, 作村勇一
Model-based reinforcement learning : brain implementation and engineering applications

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, 2003 - 2005

ISHII Shin, SHIBATA Tomohiro, YOSHIDA Wako
Gタンパク相互作用によって制御される軸索誘導の動作機構

科学研究費助成事業, 特定領域研究, 日本学術振興会, 2004 - 2004

石井信, 作村勇一
スパースガウシアンネットワークによる遺伝子ネットワークの構造推定

科学研究費助成事業, 特定領域研究, 日本学術振興会, 2003 - 2003

石井信, 大羽成征
時空間トランスクリプトーム解析に基づく転写制御ネットワークの推定

科学研究費助成事業, 特定領域研究, 日本学術振興会, 2002 - 2002

石井信, 金谷重彦
Studies on Time Complexity for Computing Association Rules in Data Mining

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (C), Japan Society for the Promotion of Science, 2001 - 2002

ITO Minoru, SHIBATA Naoki, YASUMOTO Keiichi

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