Koichiro Tamura

Profile Information

Affiliation: 教授 (生命情報研究センター長), 理学研究科生命科学専攻, 東京都立大学

Degree: PhD

J-GLOBAL ID: 201101055972962541
researchmap Member ID: B000219418

External link: https://nrid.nii.ac.jp/nrid/1000000254144/

Research Interests

Research Areas

Research History

Oct, 2008

Professor, Tokyo Metropolitan University
Apr, 2005 - Sep, 2008

Associate Professor, Tokyo Metropolitan University

Awards

Papers

Shared evolutionary trajectories of three independent neo-sex chromosomes in Drosophila.

Masafumi Nozawa, Yohei Minakuchi, Kazuhiro Satomura, Shu Kondo, Atsushi Toyoda, Koichiro Tamura

Genome research, 31(11) 2069-2079, Nov, 2021
Molecular Evolutionary Genetics Analysis (MEGA) for macOS

Glen Stecher, Koichiro Tamura, Sudhir Kumar

Molecular Biology and Evolution, 37(4) 1237-1239, Apr 1, 2020 Peer-reviewed
A new method for inferring timetrees from temporally sampled molecular sequences

Sayaka Miura, Koichiro Tamura, Qiqing Tao, Louise A. Huuki, Sergei L. Kosakovsky Pond, Jessica Priest, Jiamin Deng, Sudhir Kumar

PLOS Computational Biology, 16(1) e1007046-e1007046, Jan 17, 2020 Peer-reviewed
Reliable Confidence Intervals for RelTime Estimates of Evolutionary Divergence Times

Qiqing Tao, Koichiro Tamura, Beatriz Mello, Sudhir Kumar

Molecular Biology and Evolution, 37(1) 280-290, Jan 1, 2020 Peer-reviewed
Population genetic analysis of two species of Distylium: D. racemosum growing in East Asian evergreen broad-leaved forests and D. lepidotum endemic to the Ogasawara (Bonin) Islands

Hitomi Yagi, Jie Xu, Natsuki Moriguchi, Ryutaro Miyagi, Etsuko Moritsuka, Eri Sato, Kyoko Sugai, Suzuki Setsuko, Takeshi Torimaru, Shin-ichi Yamamoto …

Tree Genetics & Genomes, 15(6), Dec, 2019 Peer-reviewed
Inferring the demographic history of Japanese cedar, Cryptomeria japonica, using amplicon sequencing.

Moriguchi N, Uchiyama K, Miyagi R, Moritsuka E, Takahashi A, Tamura K, Tsumura Y, Teshima KM, Tachida H, Kusumi J

Heredity, 123(3) 371-383, Sep, 2019 Peer-reviewed
A machine learning method for detecting autocorrelation of evolutionary rates in large phylogenies.

Tao Q, Tamura K, Battistuzzi FU, Kumar S

Molecular Biology and Evolution, 36(4) 811-824, Jan, 2019 Peer-reviewed
Adaptive landscape of protein variation in human exomes.

Patel R, Sanderford MD, Lanham TR, Tamura K, Platt A, Gilksberg BS, Dudley JT, Xu K, Scheinfeldt LB, Kumar S

Molecular Biology and Evolution, 35(8) 2015-2025, Aug, 2018 Peer-reviewed
Theoretical foundation of the RelTime method for estimating divergence times from variable evolutionary rates.

Tamura K, Tao Q, Kumar S

Molecular Biology and Evolution, 35(7) 1770-1782, Jul, 2018 Peer-reviewed
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Kumar S, Stecher G, Li M, Knyaz C, Tamura K

Molecular Biology and Evolution, 35(6) 1547-1549, Jun, 2018 Peer-reviewed
RelTime relaxes the strict molecular clock throughout the phylogeny.

Battistuzzi FU, Tao Q, Jones L, Tamura K, Kumar S

Genome Biology and Evolution, 10(6) 1631-1636, Jun, 2018 Peer-reviewed
Polymorphism and structure of style-specific arabinogalactan proteins as determinants of pollen tube growth in Nicotiana

Andrzej K. Noyszewski, Yi-Cheng Liu, Koichiro Tamura, Alan G. Smith

BMC EVOLUTIONARY BIOLOGY, 17 186-186, Aug, 2017 Peer-reviewed
Semi-automated quantitative Drosophila wings measurements

Sheng Yang Michael Loh, Yoshitaka Ogawa, Sara Kawana, Koichiro Tamura, Hwee Kuan Lee

BMC BIOINFORMATICS, 18 319-319, Jun, 2017 Peer-reviewed
Deciphering the Routes of invasion of Drosophila suzukii by Means of ABC Random Forest

Antoine Fraimout, Vincent Debat, Simon Fellous, Ruth A. Hufbauer, Julien Foucaud, Pierre Pudlo, Jean-Michel Marin, Donald K. Price, Julien Cattel, Xiao Chen …

MOLECULAR BIOLOGY AND EVOLUTION, 34(4) 980-996, Apr, 2017 Peer-reviewed
Fast and Accurate Estimates of Divergence Times from Big Data

Beatriz Mello, Qiqing Tao, Koichiro Tamura, Sudhir Kumar

MOLECULAR BIOLOGY AND EVOLUTION, 34(1) 45-50, Jan, 2017 Peer-reviewed
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

Sudhir Kumar, Glen Stecher, Koichiro Tamura

MOLECULAR BIOLOGY AND EVOLUTION, 33(7) 1870-1874, Jul, 2016 Peer-reviewed
Ancient Male Recombination Shaped Genetic Diversity of Neo-Y Chromosome in Drosophila albomicans

Kazuhiro Satomura, Koichiro Tamura

MOLECULAR BIOLOGY AND EVOLUTION, 33(2) 367-374, Feb, 2016 Peer-reviewed
A Molecular Evolutionary Reference for the Human Variome

Li Liu, Koichiro Tamura, Maxwell Sanderford, Vanessa E. Gray, Sudhir Kumar

MOLECULAR BIOLOGY AND EVOLUTION, 33(1) 245-254, Jan, 2016 Peer-reviewed
Comprehensive identification of odorant-binding protein genes in the seed fly, Delia platura (Diptera: Anthomyiidae)

Shinya Ohta, Yousuke Seto, Koichiro Tamura, Yukio Ishikawa, Takashi Matsuo

APPLIED ENTOMOLOGY AND ZOOLOGY, 50(4) 457-463, Nov, 2015 Peer-reviewed
Phylogenetic placement of metagenomic reads using the minimum evolution principle

Alan Filipski, Koichiro Tamura, Paul Billing-Ross, Oscar Murillo, Sudhir Kumar

BMC GENOMICS, 16 1-9, Jan, 2015 Peer-reviewed

Misc.

Comparative gene expression study of antifungal immune response among Drosophila species

Yosuke Seto, Koichiro Tamura

GENES & GENETIC SYSTEMS, 91(6) 375-375, Dec, 2016
Analysis of population structure of Cryptomeria japonica based on amplicon sequenced data

Natsuki Moriguchi, Kentaro Uchiyama, Ryutaro Miyagi, Aya Takahashi, Koichiro Tamura, Yoshihiko Tsumura, Kosuke M. Teshima, Junko Kusumi, Tachida Hidenori

GENES & GENETIC SYSTEMS, 91(6) 369-369, Dec, 2016
Sequence diversity of Drosomycin genes within Drosophila lutescens

Risa Ichikawa, Yosuke Seto, Koichiro Tamura

GENES & GENETIC SYSTEMS, 90(6) 383-383, Dec, 2015
Using Pooled RNA-seq, detecting adaptive evolution for cold temperature of D.albomicans

Yo Nakamura, Koichiro Tamura

GENES & GENETIC SYSTEMS, 90(6) 384-384, Dec, 2015
Genetic diversity of neo-Y chromosome in Drosophila albomicans

Kazuhiro Satomura, Koichiro Tamura

GENES & GENETIC SYSTEMS, 90(6) 383-383, Dec, 2015
Biased phylogenetic tree estimation by evolutionary pattern changes and its correction by data-filtering (2)

Eisuke Iwamoto, Koichiro Tamura

GENES & GENETIC SYSTEMS, 90(6) 381-381, Dec, 2015
Analysis of population structure of Cryptomeria japonica based on amplicon sequenced data

Moriguchi Natsuki, Uchiyama Kentaro, Miyagi Ryutaro, Takahashi Aya, Tamura Koichiro, Tsumura Yoshihiko, Teshima Kosuke, Kusumi Junko, Tachida Hidenori

GENES & GENETIC SYSTEMS, 90(6) 395, Dec, 2015 Peer-reviewed
Population genetic analysis of cold tolerance candidate genes in Drosophila albomicans

Yo Nakamura, Yuji Torii, Kotoha Isobe, Kazuhiro Satomura, Koichiro Tamura

GENES & GENETIC SYSTEMS, 89(6) 325-325, Dec, 2014
Molecular phylogenetic analysis of the Drosophila immigrans species group using big sequence data

Yosuke Seto, Masanori Toda, Koichiro Tamura

GENES & GENETIC SYSTEMS, 89(6) 337-337, Dec, 2014
Biased phylogenetic tree estimation by evolutionary pattern changes and its correction by data-filtering

Eisuke Iwamoto, Koichiro Tamura

GENES & GENETIC SYSTEMS, 89(6) 313-313, Dec, 2014
Phenotypic evolution for environmental adaptation by gene expression changes

Koichiro Tamura, Kotoha Isobe

GENES & GENETIC SYSTEMS, 89(6) 294-294, Dec, 2014
A multi-gene phylogenetic analysis of subgenus Drosophila by next generation sequencing technique

Yuma Iwasaki, Koichiro Tamura

GENES & GENETIC SYSTEMS, 89(6) 336-336, Dec, 2014
Population genetic analysis of Pepck gene for cold tolerance of Drosophila albomicans

Koichiro Tamura, Yuji Torii, Kotoha Isobe, Kazuhiro Satomura

GENES & GENETIC SYSTEMS, 88(6) 366-366, Dec, 2013
Heterotachy analyses using Drosophila and mammalian genomes

Yoshitaka Ogawa, Koichiro Tamura

GENES & GENETIC SYSTEMS, 88(6) 382-382, Dec, 2013
Comparative transcriptome analysis of antifungal immune response in Drosophila

Yosuke Seto, Koichiro Tamura

GENES & GENETIC SYSTEMS, 88(6) 383-383, Dec, 2013
Failure of phylogenetic tree reconstruction by heterogeneous substitution pattern among lineages and the method for its recovery

Eisuke Iwamoto, Koichiro Tamura

GENES & GENETIC SYSTEMS, 88(6) 387-387, Dec, 2013
Genetic variation of DNA sequences on neo-X, neo-Y chromosomes in Drosophila albomicans

Kazuhiro Satomura, Koichiro Tamura

GENES & GENETIC SYSTEMS, 88(6) 367-367, Dec, 2013
Identification of potential antifungal peptide genes in Drosophila virilis

Yosuke Seto, Koichiro Tamura

GENES & GENETIC SYSTEMS, 87(6) 427-427, Dec, 2012
Genetic analysis of cold tolerance improvement in Drosophila albomicans

Kotoha Isobe, Koichiro Tamura

GENES & GENETIC SYSTEMS, 87(6) 415-415, Dec, 2012
Population genetics analysis for examining adaptation of Drosophila albomicans to cool climate

Yuji Torii, Kotoha Isobe, Kazuhiro Satomura, Koichiro Tamura

GENES & GENETIC SYSTEMS, 87(6) 415-415, Dec, 2012

Research Projects

ショウジョウバエの核型進化における染色体融合の適応的意義

科学研究費助成事業, 挑戦的研究(萌芽), 日本学術振興会, Jul, 2021 - Mar, 2024

田村浩一郎
急進的環境適応の遺伝基盤を解明する野外・室内実験進化オミックス

科学研究費補助金(基盤研究A), 学術振興会, Apr, 2017 - Mar, 2021

田村浩一郎
ショウジョウバエにおけるアキアズミーの遺伝基盤とその進化

科学研究費補助金（挑戦的研究(萌芽)）, 学術振興会, Apr, 2017 - Mar, 2020

田村浩一郎
アカショウジョウバエの低温耐性を向上させる遺伝子発現制御の分子機構

科学研究費補助金(挑戦的萌芽研究), 学術振興会, Apr, 2015 - Mar, 2017

田村浩一郎
ショウジョウバエの自然免疫系における遺伝子の構造と発現調節による表現形質の進化

科学研究費補助金(基盤研究(B)), 学術振興会, Apr, 2014 - Mar, 2017

田村浩一郎
ゲノムから１遺伝子まで網羅的ＤＮＡ配列情報を使った分子系統解析法の確立研究課題

科学研究費補助金(基盤研究(B)), 学術振興会, Apr, 2012 - Mar, 2016

戸田正憲
Functional analysis of odorant and gustatory receptors in insects

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2012 - Mar, 2015

MATSUO Takashi, OZAKI Katsuhisa, ISHIKAWA Yukio, TAMURA Koichiro
A study on evolution of microsatellite DNA loci by comparison of species of closely related species

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (C), Japan Society for the Promotion of Science, 2010 - 2012

TAKEZAKI Naoko, TAMURA Koichiro
Experimental estimation of evolutionary adaptation to cooler climate by Drosophila albomicans during distribution expansion to the temperate zones

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, 2011 - 2011

TAMURA Koichiro, MATSUO Takashi, TAKAHASHI Aya, ISOBE Kotoha, SATOMURA Kazuhiro, ABE Yuki, TORII Yuji, NAKAMURA Yo
Phylogeny reconstruction and taxonomic revision of the genus Drosophila by super-tree and -matrix analyses

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (C), Japan Society for the Promotion of Science, 2008 - 2010

HU Yao-Guang, TODA Masanori, TAMURA Koichiro, KATOH Toru
Insertion polymorphysm of retrotransposons and diversity of theplant genome

Grants-in-Aid for Scientific Research(基盤研究(C)), 基盤研究(C), Japan Society for the Promotion of Science, 2007 - 2008

Hisako OHTSUBO, 田村浩一郎
Estimation of Large Phylogeny Using Maximum Composite Likelihood

Grants-in-Aid for Scientific Research(基盤研究(C)), 基盤研究(C), Japan Society for the Promotion of Science, 2006 - 2008

Koichiro TAMURA
The interactive effects of speciation and introgression on the mitochondrial DNA evolution in Drosophila

Grants-in-Aid for Scientific Research(基盤研究(C)), 基盤研究(C), Japan Society for the Promotion of Science, 2003 - 2005

Koichiro TAMURA
ミトコンドリアDNAの進化における生殖的隔離と地理的隔離の効果

科学研究費補助金(奨励研究A), 奨励研究(A), 学術振興会, 2000 - 2001

田村浩一郎
分子系統学における有用遺伝子の探索:シヨウジヨウバエを用いたアプローチ

科学研究費補助金(奨励研究A), 奨励研究(A), 学術振興会, 1998 - 1999

田村浩一郎
Genetic diversity in natural populations of Japanese Potamoid crabs

Grants-in-Aid for Scientific Research(基盤研究(C)), 基盤研究(C), Japan Society for the Promotion of Science, 1997 - 1999

Tadashi AOTSUKA, 田村浩一郎, 鈴木惟司
Development of a database of gene trees and species trees

Grants-in-Aid for Scientific Research(試験研究(B), 基盤研究(A)), 試験研究(B), 基盤研究(A), Japan Society for the Promotion of Science, 1995 - 1997

斎藤成也, Naruya SAITOU, 伊藤元己, 田村浩一郎, 今西規
MOLECULAR PHYLOGENETIC STUDY OF DROSOPHILA

Grants-in-Aid for Scientific Research(一般研究(C), 基盤研究(C)), 一般研究(C), 基盤研究(C), Japan Society for the Promotion of Science, 1994 - 1996

Tadashi AOTSUKA, 田村浩一郎, 藤田弘

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Research History

Awards

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Misc.

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