Yamamoto Toshio

Profile Information

Affiliation: 教授, 資源植物科学研究所, 岡山大学

Degree: 博士（農学）(北海道大学)

researchmap Member ID: B000260005

External link: http://www.rib.okayama-u.ac.jp/research/ng-hp.html

民間企業での水稲品種開発業務を経て、イネゲノム情報を活用した遺伝研究や育種素材の開発に長く従事しています。

Research Interests

Research Areas

Environmental science/Agricultural science / Plant genetics and breeding /

Professional Memberships

JAPANESE SOCIETY OF BREEDING

Research History

Jul, 2018 - Present

Okayama University
Apr, 2016 - Jun, 2018

Institute of Crop Science, NARO, National Agriculture and Food Research Organization
Apr, 2014 - Jun, 2018

客員教授, 応用生物資源学分野, 東京大学新領域創成科学研究科
Apr, 2011 - Mar, 2016

イネゲノム育種研究ユニット長, 農業生物先端ゲノム研究センター, 国立研究開発法人農業生物資源研究所
Jan, 2006 - Mar, 2006

National Institute of Agrobiological Sciences
Mar, 2002 - Dec, 2003

株式会社本田技術研究所
Apr, 1991 - Feb, 2002

日本たばこ産業株式会社

Education

- Mar, 1991

北海道大学大学院農学研究科修士課程修了

Committee Memberships

Apr, 2024 - Present

運営委員（シンポジウム、地域）, 日本育種学会
Apr, 2022 - Present

Rice 編集委員
Apr, 2022 - Present

日本育種学会代議員
Jan, 2020 - Present

編集委員, Plant Breeding
Apr, 2016 - Present

編集委員, 日本育種学会

Papers

Fluctuation in genetic effects with introduced early- or late-heading-date gene alleles in near-isogenic lines with different genetic backgrounds in rice

Kiyosumi Hori, Mitsuo Takamatsu, Jun Hosoi, Taneaki Tsugane, Reiko Hayashi, Manabu Watanabe, Tatsumi Mizubayashi, Tsuyu Ando, Ayahiko Shomura, Yoshiyuki Mukai …

Breeding Research, 25(2) 123-139, Dec 1, 2023 Peer-reviewedLast author
A cell wall–localized cytokinin/purine riboside nucleosidase is involved in apoplastic cytokinin metabolism in Oryza sativa

Mikiko Kojima, Nobue Makita, Kazuki Miyata, Mika Yoshino, Akira Iwase, Miwa Ohashi, Alicia Surjana, Toru Kudo, Noriko Takeda-Kamiya, Kiminori Toyooka …

Proceedings of the National Academy of Sciences, 120(36), Aug 28, 2023 Peer-reviewed
Development of 12 sets of chromosome segment substitution lines that enhance allele mining in Asian cultivated rice

Kazufumi Nagata, Yasunori Nonoue, Kazuki Matsubara, Ritsuko Mizobuchi, Nozomi Ono, Taeko Shibaya, Kaworu Ebana, Eri Ogiso-Tanaka, Takanari Tanabata, Kazuhiko Sugimoto …

Breeding Science, 73(3) 332-342, Jul, 2023 Peer-reviewed
GBScleanR: robust genotyping error correction using a hidden Markov model with error pattern recognition.

Tomoyuki Furuta, Toshio Yamamoto, Motoyuki Ashikari

Genetics, 224(2), May 26, 2023 Peer-reviewed
Alleles of high-yielding indica rice that improve root hydraulic conductance also increase flag leaf photosynthesis, biomass, and grain production of japonica rice in the paddy field

Masahiro Yamashita, Chikako Ootsuka, Hikaru Kubota, Shunsuke Adachi, Takuya Yamaguchi, Kazumasa Murata, Toshio Yamamoto, Tadamasa Ueda, Taiichiro Ookawa, Tadashi Hirasawa

Field Crops Research, 289 108725-108725, Dec, 2022 Peer-reviewed
Genetic Background Negates Improvements in Rice Flour Characteristics and Food Processing Properties Caused by a Mutant Allele of the PDIL1-1 Seed Storage Protein Gene.

Kiyosumi Hori, Tomoya Okunishi, Kenji Nakamura, Ken Iijima, Masahiro Hagimoto, Katsuyuki Hayakawa, Koka Shu, Takashi Ikka, Hiroto Yamashita, Masanori Yamasaki …

Rice (New York, N.Y.), 15(1) 13-13, Mar 5, 2022 Peer-reviewedLast author
iTRAQ-Based Proteomics Investigation of Critical Response Proteins in Embryo and Coleoptile During Rice Anaerobic Germination

Zhang Guangchen, Liu Zimeng, Liu Youhong, Kuya Noriyuki, Hua Yuchen, Shi Hongru, Zhao Weilin, Han Yuqing, Yamamoto Toshio, Chen Wenfu …

Rice Science, 28(4) 391-401, Jul, 2021 Peer-reviewed
Quantitative trait loci for leaf inclination angle in rice detected using reciprocal mapping populations

Nan Su San, Kazuya Soda, Yosuke Ootsuki, Masahiro Yamashita, Ryoji Karimata, Kasumi Suzuki, Shunsuke Adachi, Toshio Yamamoto, Takanari Tanabata, Tadamasa Ueda …

Field Crops Research, 266 108128-108128, Jun, 2021 Peer-reviewed
Evaluation of the genetic effect of nine yield-related alleles using near-isogenic lines in the genetic backgrounds of Japanese rice cultivars

Tadamasa Ueda, Ken Ishimaru, Akitoshi Goto, Takashi Ikka, Katsuhiko Kondo, Kazuki Matsubara, Takeshi Hayashi, Toshio Yamamoto, Junichi Tanaka

Breeding Research, 23(1) 16-27, Jun 1, 2021 Peer-reviewed
Diploid Male Gametes Circumvent Hybrid Sterility Between Asian and African Rice Species

Daichi Kuniyoshi, Itaru Masuda, Yoshitaka Kanaoka, Yuki Shimazaki-Kishi, Yoshihiro Okamoto, Hideshi Yasui, Toshio Yamamoto, Kiyotaka Nagaki, Yoichiro Hoshino, Yohei Koide …

Frontiers in Plant Science, 11 579305, Nov 5, 2020 Peer-reviewed
Semi-dwarf 1 (sd1) gene enhances light penetration into the canopy through regulating leaf inclination angle in rice

Nan Su San, Kasumi Suzuki, Kazuya Soda, Shunsuke Adachi, Hiroyuki Kasahara, Toshio Yamamoto, Takashi Ikka, Katsuhiko Kondo, Utako Yamanouchi, Kazuhiko Sugimoto …

Field Crops Research, 246 107694-107694, Feb, 2020 Peer-reviewed
Genetic determination for source capacity to support breeding of high-yielding rice (Oryza sativa)

Adachi, S., Ohkubo, S., San, N.S., Yamamoto, T.

Molecular Breeding, 40(20), 2020 Peer-reviewedLast author
Population Genomic Analysis and De Novo Assembly Reveal the Origin of Weedy Rice as an Evolutionary Game.

Jian Sun, Dianrong Ma, Liang Tang, Minghui Zhao, Guangchen Zhang, Wenjia Wang, Jiayu Song, Xiang Li, Zimeng Liu, Wenxing Zhang …

Molecular plant, 12(5) 632-647, May 6, 2019 Peer-reviewed
Surveillance of panicle positions by unmanned aerial vehicle to reveal morphological features of rice.

Daisuke Ogawa, Toshihiro Sakamoto, Hiroshi Tsunematsu, Toshio Yamamoto, Noriko Kanno, Yasunori Nonoue, Jun-Ichi Yonemaru

PLOS ONE, 14(10) e0224386, 2019 Peer-reviewed
Novel method for evaluation of anaerobic germination in rice and its application to diverse genetic collections

Kuya, N., Sun, J., Iijima, K., Venuprasad, R., Yamamoto, T.

Breeding Science, 69(4) 633-639, 2019 Peer-reviewedLast authorCorresponding author
Next generation long-culm rice with superior lodging resistance and high grain yield, Monster Rice 1

Nomura, T., Arakawa, N., Yamamoto, T., Ueda, T., Adachi, S., Yonemaru, J.-I., Abe, A., Takagi, H., Yokoyama, T., Ookawa, T.

PLoS ONE, 14(8) e0221424, 2019 Peer-reviewed
Identification of quantitative trait loci for breaking and bending types lodging resistance in rice, using recombinant inbred lines derived from Koshihikari and a strong culm variety, Leaf Star

Samadi, A.F., Suzuki, H., Ueda, T., Yamamoto, T., Adachi, S., Ookawa, T.

Plant Growth Regulation, 89(1) 83-98, 2019 Peer-reviewed
Genetic architecture of leaf photosynthesis in rice revealed by different types of reciprocal mapping populations

Adachi, S., Yamamoto, T., Nakae, T., Yamashita, M., Uchida, M., Karimata, R., Ichihara, N., Soda, K., Ochiai, T., Ao, R. …

Journal of Experimental Botany, 70(19) 5131-5144, 2019 Peer-reviewedLead author
Mapping of QTLs associated with lodging resistance in rice (Oryza sativa L.) using the recombinant inbred lines derived from two high yielding cultivars, Tachisugata and Hokuriku 193

Jiang, M., Yamamoto, E., Yamamoto, T., Matsubara, K., Kato, H., Adachi, S., Nomura, T., Kamahora, E., Ma, J., Ookawa, T.

Plant Growth Regulation, 87(2) 1-10, 2019 Peer-reviewed
Koshihikari: a premium short-grain rice cultivar – its expansion and breeding in Japan

Asako Kobayashi, Kiyosumi Hori, Toshio Yamamoto, Masahiro Yano

Rice, 11(1) 15, Dec 1, 2018 Peer-reviewedCorresponding author

Books and Other Publications

Revised Consensus Document on the Biology of Rice (Oryza sativa L.) Series on the Harmonisation of Regulatory Oversight in Biotechnology No.70

(Role: Contributor, SECTION 1. GENERAL DESCRIPTION INCLUDING TAXONOMY AND MORPHOLOGY, 1.2. Description)

OECD Environment Directorate, Environment, Health and Safety Division, Dec, 2021
Genomics of Plant Genetic Resources

Yamamoto T, Uga Y, Yano M (Role: Contributor, Genomics-assisted allele mining and its integration into rice breeding)

2014
光合成研究と産業応用最前線

安達俊輔, 山本敏央 (Role: Contributor, 作物の光合成速度を向上させる自然変異遺伝子の解明)

（株）エヌ・ティー・エス, 2014
Rice Biology in the Genomics Era

Yamamoto T, Yano M (Role: Contributor, Detection and Molecular cloning of genes underlying quantitative phenotypic variation in rice)

Springer, 2007

Misc.

A Few Selected Approaches to Increase Genetic Diversity in Rice Breeding

Toshio Yamamoto, Tomoyuki Furuta, Daisuke Ogawa, Jun-ichi Yonemaru, Daichi Kuniyoshi, Yuji Kishima

Journal of Crop Research, 65 83-87, Oct, 2020 Peer-reviewedInvitedLead authorCorresponding author
水稲の収量および倒伏抵抗性関連形質の量的形質遺伝子座解析―極多着粒・極強稈系統LTAT‐29とタカナリのF₂の分離集団を用いて―

野村知宏, 山本敏央, 上田忠正, 米丸淳一, 阿部陽, 高木宏樹, 安達俊輔, 平沢正, 大川泰一郎

育種学研究, 19 21, Oct 7, 2017
バイオマス増大に向けたイネ次世代育種法の開発と利用

山本敏央

JATAFFジャーナル, 45(5) 65, 2016
ブータン品種「Kuchum」由来の穂ばらみ期耐冷性QTLを保有する「ひとめぼれ」準同質遺伝子系統の育成

遠藤貴司, 佐伯研一, 安藤露, 正村純彦, 水林達実, 山本敏央

育種学研究, 16 72, Sep 26, 2014
多収イネの光合成能力に貢献する遺伝子の特定

山本敏央, 髙井俊之

明日の食品産業 = Food industry for tomorrow, 2014(7) 35-39, Jul, 2014
北海道のイネ品種群の集団構造解析

池ケ谷智仁, 品田博史, 山本敏央, 山本英司, 堀清純, 米丸淳一, 松葉修一, 藤野賢治

育種学研究, 16 13, Mar 21, 2014
多収稲の光合成能力に貢献するGPS遺伝子を発見

山本敏央

ニューカントリー, 64(8) 50-51, 2014
Map-based cloning of QTL, GPS (GREEN FOR PHOTOSYNTHESIS), controlling leaf photosynthesis in rice high-yielding variety, Takanari

TAKAI Toshiyuki, ADACHI Shunsuke, TAGUCHI Fumio, ARAI Yumiko, IWASAWA Norio, YOSHINAGA Satoshi, YAMANOUCHI Utako, OOKAWA Taiichiro, HIRASAWA Tadashi, YANO Masahiro …

日本作物學會紀事, 81 178-179, Mar 29, 2012
Whole genome sequencing of "Koshihikari", a leading rice variety in Japan

YAMAMOTO Toshio, NAGASAKI Hideki

農林水産技術研究ジャーナル, 34(4) 35-39, Apr 1, 2011
What we have learned about a marker assisted selection in rice

YANO Masahiro, YAMAMOTO Toshio

農林水産技術研究ジャーナル, 33(12) 5-11, Dec 1, 2010
Genomics-assisted breeding in rice

(47) 1-10, May, 2010
インド型水稲品種の高い個葉光合成能に関与するQTL

高井俊之, 近藤始彦, 荒井裕見子, 石丸努, 吉永悟志, 矢野昌裕, 山本敏央

農研機構作物研究所成果情報(Web), 2010, 2010
コシヒカリゲノムの解読とその育種的利用 (基礎研究を生かす種苗産業国際化戦略の最前線--ハイブリットライスの経験に学ぶ)

山本敏央, 矢野昌裕

Techno innovation, 20(2) 13-19, 2010
Development and utilization of chromosomal segment substitution lines (CSSLs) in rice

YAMAMOTO T., YANO M.

78 453-453, Mar 27, 2009
ゲノム育種による効率的品種育成技術の開発-QTL遺伝子解析の推進-1 QTL遺伝子解析のための基盤整備(2)QTL遺伝子解析手法の体系化ならびに研究支援

矢野昌裕, 長村吉晃, 上田忠正, 福岡修一, 宇賀優作, 山本敏央, 安藤露

農林水産省農林水産技術会議事務局研究成果, (473), 2009
ゲノミクスを背景とした新たな作物育種

矢野昌裕, 福岡修一, 江花薫子, 山本敏央

ブレインテクノニュース, 133 1-7, 2009
遺伝子情報にもとづくイネのゲノム育種への展開 (特集稲と<自然>の再定義)

山本敏央, 矢野昌裕

科学, 77(6) 607-613, Jun, 2007
Rice genome research as a linker of plant genetics and molecular biology

T Sasaki, M Yano, K Yamamoto, T Matsumoto

FASEB JOURNAL, 11(9) A1004-A1004, Jul, 1997

Awards

Mar, 2013

論文賞, Identification of chromosomal regions controlling the leaf photosynthetic rate in rice by using a progeny from Japonica and high-yielding Indica varieties, 日本作物学会

Adachi S, Nito N, Kondo M, Yamamoto T, Arai-Sanoh Y, Ando T, Ookawa T, Yano M, Hirasawa T
Mar, 2012

論文賞, Detection of a QTL for accumulating Cd in rice that enables efficient Cd phytoextraction from soil, 日本育種学会

Abe T, Taguchi-Shiobara F, Kojima Y, Ebitani T, Kuramata M, Yamamoto T, Yano M, Ishikawa S
Mar, 2010

論文賞, A novel quantitative trait locus, qCL1, involved in semi-dwarfism derived from Japanese rice cultivar Nipponbare, 日本育種学会

Hori K, Yamamoto T, Ebana K, Takeuchi Y, Yano M
Mar, 2006

論文賞, Construction and evaluation of chromosome segment substitution lines carrying overlapping chromosome segments of indica rice cultivar ‘Kasalath’ in a genetic background of Japonica elite cultivar ‘Koshihikari’, 日本育種学会

Research Projects

限られた育種母本から高能率に遺伝的多様性を生み出す多系交雑育種システムの開発

科学研究費助成事業基盤研究(B), 基盤研究(B), 日本学術振興会, Apr, 2020 - Mar, 2024

山本敏央, 小川大輔, 米丸淳一, 古田智敬
イネ小胞子に潜在する個体分化能と倍数化能を活用した育種基盤の新構築

科学研究費助成事業基盤研究(A), 基盤研究(A), 日本学術振興会, Apr, 2019 - Mar, 2023

貴島祐治, 山本敏央, 長岐清孝, 小出陽平, 金鍾明
Biological sustainability of double-cropping supported by seasonal change in root microbiome

Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (B), Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Jul, 2019 - Mar, 2022
Elucidation of the mechanism of plant oxalate accumulation on the basis of wide targeted metabolomics

Grants-in-Aid for Scientific Research Grant-in-Aid for Young Scientists (B), Grant-in-Aid for Young Scientists (B), Japan Society for the Promotion of Science, Apr, 2016 - Mar, 2019

Atsuko Miyagi, Kawai Maki, Yamaguchi Masatoshi, Ishikawa Toshiki, Nagano Minoru, Oono Yutaka, Hase Yoshihiro, Ookawa Taiichiro, Adachi Shunsuke, Noguchi Ko, Tokida Takeshi, Usui Yasuhiro, Nakamura Hirofumi, Sakai Hidemitsu, Hasegawa Toshihiro, Yamamoto Toshio
Rapid Mobilization of Alleles for Rice Cultivar Improvement in Sub-Saharan Africa

ビルアンドメリンダゲイツ財団, アフリカライス, Jan, 2014 - Jun, 2018

山本敏央
Identification of QTL promoting hydraulic conductance at ripening stage in high yielding rice variety

Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (C), Grant-in-Aid for Scientific Research (C), Japan Society for the Promotion of Science, Apr, 2017 - Mar, 2018
実験系統群を用いたフェノーム解析と連鎖遺伝子の同定

次世代ゲノム基盤プロジェクト, 農林水産省, Apr, 2016 - Mar, 2018

山本敏央
光合成効率を高めるQTLの単離と集積

次世代ゲノム基盤プロジェクト, 農林水産省, Apr, 2013 - Mar, 2018

山本敏央
バイオマスの増大に向けたイネ次世代育種法の開発と利用

農林水産業・食品産業科学技術研究推進事業, 農林水産省, Apr, 2015 - Mar, 2016

山本敏央
系譜ハプロタイプ情報を利用したイネの食味関連領域の推定と検証

次世代ゲノム基盤プロジェクト, 農林水産省, Apr, 2013 - Mar, 2015

山本敏央
Development of genetic tools for crop science using genome information -low-temperature germination in rice

Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (B), Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, 2001 - 2004

NEMOTO Keisuke, TSUTSUMI Nobuhiro, KAMOSHITA Akihiko, YAMAMOTO Toshio, JINUSHI Kenji, KOMARI Toshihiko

Industrial Property Rights

第30962号品種出願稲（山形１１９号）

結城和博, 佐野智義, 中場勝, 後藤元, 森谷真紀子, 齋藤信弥, 阿部洋平, 渡部幸一郎, 齋藤寛, 佐藤久実, 齋藤久美, 本間猛俊, 山本敏央, 矢野昌裕
第29773 号品種出願稲（ファイレメCD１号）

安部匡, 石川覚, 倉俣正人, 矢野昌裕, 山本敏央
特許第4462566号穀物の収量を増加させる遺伝子、並びにその利用

芦苅基行, 松岡信, 林少揚, 山本敏央, 西村明日香, 高師知紀
特許第4448031号穀物の収量を増加させる遺伝子、並びにその利用

芦苅基行, 松岡信, 林少揚, 山本敏央, 西村明日香, 高師知紀
第21536号品種出願（命名登録）稲（関東ＨＤ２号）

竹内善信, 安東郁男, 井邊時雄, 太田久稔, 佐藤宏之, 平山正賢, 加藤浩, 根本博, 平林秀介, 出田収, 石井卓朗, 前田英郎, 矢野昌裕, 田口文緒, 蛯谷武志, 山本敏央
特開2007-049994 穀物の収量を増加させる遺伝子、並びにその利用

芦苅基行, 松岡信, 林少揚, 山本敏央, 西村明日香, 高師知紀
第20119号品種出願（命名登録）稲（コシヒカリ関東ＨＤ１号）

竹内善信, 安東郁男, 井邊時雄, 太田久稔, 佐藤宏之, 平山正賢, 加藤浩, 根本博, 平林秀介, 出田収, 坂井真, 青木法明, 矢野昌裕, 田口文緒, 蛯谷武志, 山本敏央
WO2004-044200 穀物の収量を増加させる遺伝子、並びにその利用

芦苅基行, 松岡信, 林少揚, 山本敏央, 西村明日香, 高師知紀
第10870号品種登録稲（いわた１３号）

柏原正和, 沼澤広宣, 中村崇, 山本敏央
特開2002-345485 イネBT型雄性不稔細胞質に対する稔性回復遺伝子座の遺伝子型を推定する方法

小森俊之, 山本敏央, 新田直人, 竹森尚樹
特開2002-291488 混入種籾の検出方法

新田直人, 山本敏央
第8630号品種登録稲（いわた８号）

柏原正和, 伊藤広昭, 山本敏央, 沼澤広宣, 香村敏郎
第8631号品種登録稲（いわた１２号）

柏原正和, 伊藤広昭, 山本敏央, 沼澤広宣, 香村敏郎
第8632号品種登録稲（いわた１５号）

柏原正和, 伊藤広昭, 山本敏央, 沼澤広宣, 香村敏郎
第7690号品種登録稲（いわた５号）

柏原正和, 伊藤広昭, 山本敏央, 沼澤広宣, 長谷川勉, 中村崇, 久保友明, 香村敏郎
第7691号品種登録稲（いわた１１号）

柏原正和, 伊藤広昭, 山本敏央, 沼澤広宣, 久保友明, 香村敏郎
第5189号品種登録稲（いわた３号）

柏原正和, 馬場広昭, 山本敏央, 久保友明, 香村俊郎

Social Activities

農作物の品種改良のいま① ～しくみや技術、めざすもの～

Lecturer

倉敷市, 倉敷市大学連携講座, Oct 16, 2021

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Research History

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Misc.

Awards

Research Projects

Industrial Property Rights

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