論文

査読有り
2012年2月

Re-investigation and RNA sequencing-based identification of genes with placenta-specific imprinted expression

HUMAN MOLECULAR GENETICS
  • Hiroaki Okae
  • ,
  • Hitoshi Hiura
  • ,
  • Yuichiro Nishida
  • ,
  • Ryo Funayama
  • ,
  • Satoshi Tanaka
  • ,
  • Hatsune Chiba
  • ,
  • Nobuo Yaegashi
  • ,
  • Keiko Nakayama
  • ,
  • Hiroyuki Sasaki
  • ,
  • Takahiro Arima

21
3
開始ページ
548
終了ページ
558
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.1093/hmg/ddr488
出版者・発行元
OXFORD UNIV PRESS

Within the vertebrate groups, only mammals are subject to a specialized epigenetic process termed genomic imprinting in which genes are preferentially expressed from one parental allele. Imprinted expression has been reported for >100 mouse genes and, for approximately one-quarter of these genes, the imprinted expression is specific to the placenta (or extraembryonic tissues). This seemingly placenta-specific imprinted expression has garnered much attention, as has the apparent lack of conserved imprinting between the human and mouse placenta. In this study, we used a novel approach to re-investigate the placenta-specific expression using embryo transfer and trophoblast stem cells. We analyzed 20 genes previously reported to show maternal allele-specific expression in the placenta, and only 8 genes were confirmed to be imprinted. Other genes were likely to be falsely identified as imprinted due to their relatively high expression in contaminating maternal cells. Next, we performed a genome-wide transcriptome assay and identified 133 and 955 candidate imprinted genes with paternal allele- and maternal allele-specific expression. Of those we analyzed in detail, 1/6 (Gab1) of the candidates for paternal allele-specific expression and only 1/269 (Ano1) candidates for maternal allele-specific expression were authentically imprinted genes. Imprinting of Ano1 and Gab1 was specific to the placenta and neither gene displayed allele-specific promoter DNA methylation. Imprinting of ANO1, but not GAB1, was conserved in the human placenta. Our findings impose a considerable revision of the current views of placental imprinting.

リンク情報
DOI
https://doi.org/10.1093/hmg/ddr488
Web of Science
https://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=JSTA_CEL&SrcApp=J_Gate_JST&DestLinkType=FullRecord&KeyUT=WOS:000299351000007&DestApp=WOS_CPL
ID情報
  • DOI : 10.1093/hmg/ddr488
  • ISSN : 0964-6906
  • Web of Science ID : WOS:000299351000007

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