KALAY Ziya (Ziya Kalay) - マイポータル

基本情報

所属: 京都大学

J-GLOBAL ID: 201401013211912890
researchmap会員ID: 7000008843

論文

Kinetics of self-assembly via facilitated diffusion: Formation of the transcription complex

Ziya Kalay

PHYSICAL REVIEW E 92(4) 2015年10月
Fragmentation of random trees

Z. Kalay, E. Ben-Naim

JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL 48(4) 045001 2015年1月査読有り
Ultrafast Diffusion of a Fluorescent Cholesterol Analog in Compartmentalized Plasma Membranes

Nao Hiramoto-Yamaki, Kenji A. K. Tanaka, Kenichi G. N. Suzuki, Koichiro M. Hirosawa, Manami S. H. Miyahara, Ziya Kalay, Koichiro Tanaka, Rinshi S. Kasai, Akihiro Kusumi, Takahiro K. Fujiwara

TRAFFIC 15(6) 583-612 2014年6月査読有り
Lateral diffusion in a discrete fluid membrane with immobile particles

Ziya Kalay, Takahiro K. Fujiwara, Akihisa Otaka, Akihiro Kusumi

PHYSICAL REVIEW E 89(2) 2014年2月査読有り
Distribution of population-averaged observables in stochastic gene expression

Bhaswati Bhattacharyya, Ziya Kalay

PHYSICAL REVIEW E 89(1) 2014年1月査読有り
Observing the rotational diffusion of nanodiamonds with arbitrary nitrogen vacancy center configurations

Yohsuke Yoshinari, Ziya Kalay, Yoshie Harada

PHYSICAL REVIEW B 88(23) 2013年12月査読有り
Impact of molecular clustering inside nanopores on desorption processes

Manuel Tsotsalas, Pavel Hejcik, Kenji Sumida, Ziya Kalay, Shuhei Furukawa, Susumu Kitagawa

Journal of the American Chemical Society 135(12) 4608-4611 2013年3月27日査読有り
Archipelago architecture of the focal adhesion: Membrane molecules freely enter and exit from the focal adhesion zone

Akihiro C. E. Shibata, Takahiro K. Fujiwara, Limin Chen, Kenichi G. N. Suzuki, Yoshiro Ishikawa, Yuri L. Nemoto, Yoshihiro Miwa, Ziya Kalay, Rahul Chadda, Keiji Naruse …

CYTOSKELETON 69(6) 380-392 2012年6月査読有り
Reaction kinetics in the plasma membrane

Ziya Kalay

BIOTECHNOLOGY JOURNAL 7(6) 745-752 2012年6月査読有り
Exact Green's functions for a Brownian particle reversibly binding to a fixed target in a finite, two-dimensional, circular domain

Ziya Kalay

JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL 45(23) 2012年6月査読有り
Effects of confinement on the statistics of encounter times: exact analytical results for random walks in a partitioned lattice

Ziya Kalay

JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL 45(21) 2012年6月査読有り
Confining Domains Lead to Reaction Bursts: Reaction Kinetics in the Plasma Membrane

Ziya Kalay, Takahiro K. Fujiwara, Akihiro Kusumi

PLOS ONE 7(3) 2012年3月査読有り
Dynamic Organizing Principles of the Plasma Membrane that Regulate Signal Transduction: Commemorating the Fortieth Anniversary of Singer and Nicolson's Fluid-Mosaic Model

Akihiro Kusumi, Takahiro K. Fujiwara, Rahul Chadda, Min Xie, Taka A. Tsunoyama, Ziya Kalay, Rinshi S. Kasai, Kenichi G. N. Suzuki

ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 28 28 215-250 2012年査読有り
Porous Coordination Polymer Hybrid Device with Quartz Oscillator: Effect of Crystal Size on Sorption Kinetics

Hiromitsu Uehara, Stephane Diring, Shuhei Furukawa, Ziya Kalay, Manuel Tsotsalas, Masashi Nakahama, Kenji Hirai, Mio Kondo, Osami Sakata, Susumu Kitagawa

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 133(31) 11932-11935 2011年8月査読有り
Fundamental and functional aspects of mesoscopic architectures with examples in physics, cell biology, and chemistry

Ziya Kalay

CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY 46(4) 310-326 2011年8月査読有り
Cytoskeleton-Induced Mesoscale Domains

Ziya Kalay, Takahiro K. Fujiwara, Akihiro Kusumi

Cellular Domains 3-22 2011年5月31日査読有り
Extensions of effective-medium theory of transport in disordered systems

V. M. Kenkre, Z. Kalay, P. E. Parris

PHYSICAL REVIEW E 79(1) 2009年1月査読有り
Effects of disorder in location and size of fence barriers on molecular motion in cell membranes

Z. Kalay, P. E. Parris, V. M. Kenkre

JOURNAL OF PHYSICS-CONDENSED MATTER 20(24) 2008年6月査読有り
Molecular motion in cell membranes: Analytic study of fence-hindered random walks

V. M. Kenkre, L. Giuggioli, Z. Kalay

PHYSICAL REVIEW E 77(5) 2008年5月査読有り
Study of transients in the propagation of nonlinear waves in some reaction diffusion systems

L. Giuggioli, Z. Kalay, V. M. Kenkre

EUROPEAN PHYSICAL JOURNAL B 62(3) 341-348 2008年4月査読有り

MISC

(talk) Fragmentation of random trees

Ziya Kalay

2015 American Physical Society March Meeting 2015年3月
A theoretical analysis of inferring molecular interactions from single particle trajectories

Ziya Kalay

2015 American Physical Society March Meeting 2015年3月
(poster)Observing the rotational diffusion of nanodiamonds with arbitrary nitrogen vacancy center configurations

Ziya Kalay

International Workshop on Quantitative Biology 2013, Osaka University 2013年11月
Diffusion in the plasma membrane with immobile molecules: significance of fluid dynamical interactions

Ziya Kalay

The 51th Annual Meeting of the Biophysical Society of Japan 2013年10月
Diffusion in a hard-disk fluid with immobile particles: molecular transport in the plasma membrane

Ziya Kalay

Diffusion Fundamentals V 2013年8月
Effects of confinement on statistics of encounter times in lattices and its implications for the kinetics of reversible reactions

Ziya Kalay

STATPHYS 25 2013年7月
Diffusion in a discrete two-dimensional fluid with immobile particles: molecular trans- port in the plasma membrane

Ziya Kalay

Frontier of Statistical Physics and Information Processing 2013 at Yukawa Inst. for Theoretical Physics, Kyoto/Japan 2013年7月
(talk)Effects of confinement on the statistics of encounter times: exact analytical results for random walks in a partitioned lattice

Ziya Kalay

2012 Fall Meeting of the Physical Society of Japan 2012年9月
A Brownian particle undergoing reversible binding in a surface: exact theoretical results and an application in single molecule biophysics

Ziya Kalay

The 50th Annual Meeting of the Biophysical Society of Japan 2012年8月
Effects of confinement on reaction kinetics in the plasma membrane

Ziya Kalay

The 6th Quantitative Biology (q-Bio) Conference 2012年8月
Kinetics of reversible reactions at the single molecule level: Effects of confining domains

Ziya Kalay

CLS-iCeMS Joint Symposium: Crossing Boundaries: Stem Cells, Materials, Mesoscopic Sciences, and Beyond 2012年4月
Reaction kinetics in the cell membrane: confining domains lead to reaction bursts,

Ziya Kalay

American Physical Society March Meeting 2012年3月
Reversible reactions at the single molecule level: An account on the effects of confining domains

Ziya Kalay

4th Annual Meeting of the Japanese Society for Quantitative Biology 2012年1月
Effects of confinement on reaction kinetics in the plasma membrane,

Ziya Kalay

The 49th Annual Meeting of the Biophysical Society of Japan 2011年9月
Effects of confinement on reaction kinetics

Ziya Kalay

Heidelberg-Kyoto Joint Symposium: Crossing Boundaries – Stem Cells, Materials, and Mesoscopic Sciences 2011年7月

講演・口頭発表等

Diffusion in biological membranes that contain immobile molecules

Ziya Kalay

University System of Taiwan-iCeMS International Symposium 2013年11月18日
Kinetics of reversible dimerization in the plasma membrane

Ziya Kalay

The 14th International Membrane Research Forum 2013年3月16日
On the stochastic nature of chemical reactions in inhomogeneous and small biological systems

Ziya Kalay

iCeMS Symposium on Theoretical and Computational Biology 2013年3月1日
Molecular encounters at the mesoscale: effects of low numbers and confinement

Ziya Kalay

1st International Workshop in Quantitative Biology 2012年11月22日