論文

査読有り
2016年10月

Targeting 24 bp within Telomere Repeat Sequences with Tandem Tetramer Pyrrole-Imidazole Polyamide Probes

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
  • Yusuke Kawamoto
  • ,
  • Asuka Sasaki
  • ,
  • Anandhakumar Chandran
  • ,
  • Kaori Hashiya
  • ,
  • Satoru Ide
  • ,
  • Toshikazu Bando
  • ,
  • Kazuhiro Maeshima
  • ,
  • Hiroshi Sugiyama

138
42
開始ページ
14100
終了ページ
14107
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.1021/jacs.6b09023
出版者・発行元
AMER CHEMICAL SOC

Synthetic molecules that bind sequence-specifically to DNA have been developed for varied biological applications, including anticancer activity, regulation of gene expression, and visualization of specific genomic regions. Increasing the number of base pairs targeted by synthetic molecules strengthens their sequence specificity. Our group has been working on the development of pyrrole-imidazole polyamides that bind to the minor groove of DNA in a sequence-specific manner without causing denaturation. Recently, we reported a simple synthetic method of fluorescent tandem dimer polyamide probes composed of two hairpin moieties with a linking hinge, which bound to 12 bp in human telomeric repeats (5'-(TTAGGG)n-3') and could be used to specifically visualize telomeres in chemically fixed cells under mild conditions. We also performed structural optimization and extension of the target base pairs to allow more specific staining of telomeres. In the present study, we synthesized tandem tetramer polyamides composed of four hairpin moieties, targeting 24 bp in telomeric repeats, the longest reported binding site for synthetic, non-nucleic-acid-based, sequence-specific DNA-binding molecules. The novel tandem tetramers bound with a nanomolar dissociation constant to 24 bp sequences made up of four telomeric repeats. Fluorescently labeled tandem tetramer polyamide probes could visualize human telomeres in chemically fixed cells with lower background signals than polyamide probes reported previously, suggesting that they had higher specificity for telomeres. Furthermore, high-throughput sequencing of human genomic DNA pulled down by the biotin-labeled tandem tetramer polyamide probe confirmed its effective binding to telomeric repeats in the complex chromatinized genome.

リンク情報
DOI
https://doi.org/10.1021/jacs.6b09023
PubMed
https://www.ncbi.nlm.nih.gov/pubmed/27690451
Web of Science
https://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=JSTA_CEL&SrcApp=J_Gate_JST&DestLinkType=FullRecord&KeyUT=WOS:000386540500053&DestApp=WOS_CPL
ID情報
  • DOI : 10.1021/jacs.6b09023
  • ISSN : 0002-7863
  • PubMed ID : 27690451
  • Web of Science ID : WOS:000386540500053

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