An unprecedented damage losses is expected as the worst scenario of a M7.3 earthquake hit Tokyo Metropolitan. In response to this, MEXT started a new research program of which all authors in the paper participated. Under this research program, we adopted the logistic process of Theory of Constraints to clarify the problem schemes from near-field earthquake in Tokyo metropolitan area. We had 4 rounds of comprehensive workshop with more than 80 experts in various related fields and 3 rounds of facilitator workshop to created problem schemes. As a result of this workshop, 2,989 entities were identified, with problem schemes of 14 Core Conflicts were elaborated.