論文

査読有り
2016年10月

Thermal Stability of RNA Structures with Bulky Cations in Mixed Aqueous Solutions

BIOPHYSICAL JOURNAL
  • Shu-ichi Nakano
  • ,
  • Yuichi Tanino
  • ,
  • Hidenobu Hirayama
  • ,
  • Naoki Sugimoto

111
7
開始ページ
1350
終了ページ
1360
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.1016/j.bpj.2016.08.031
出版者・発行元
CELL PRESS

Bulky cations are used to develop nucleic-acid-based technologies for medical and technological applications in which nucleic acids function under nonaqueous conditions. In this study, the thermal stability of RNA structures was measured in the presence of various bulky cations in aqueous mixtures with organic solvents or polymer additives. The stability of oligonucleotide, transfer RNA, and polynucleotide structures was decreased in the presence of salts of tetrabutylammonium and tetrapentylammonium ions, and the stability and salt concentration dependences were dependent on cation sizes. The degree to which stability was dependent on salt concentration was correlated with reciprocals of the dielectric constants of mixed solutions, regardless of interactions between the cosolutes and RNA. Our results show that organic solvents affect the strength of electrostatic interactions between RNA and cations. Analysis of ion binding to RNA indicated greater enhancement of cation binding to RNA single strands than to duplexes in media with low dielectric constants. Furthermore, background bulky ions changed the dependence of RNA duplex stability on the concentration of metal ion salts. These unique properties of large tetraalkylammonium ions are useful for controlling the stability of RNA structures and its sensitivity to metal ion salts.

リンク情報
DOI
https://doi.org/10.1016/j.bpj.2016.08.031
Web of Science
https://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=JSTA_CEL&SrcApp=J_Gate_JST&DestLinkType=FullRecord&KeyUT=WOS:000385471500003&DestApp=WOS_CPL
ID情報
  • DOI : 10.1016/j.bpj.2016.08.031
  • ISSN : 0006-3495
  • eISSN : 1542-0086
  • Web of Science ID : WOS:000385471500003

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