論文

査読有り
2018年12月1日

β-Strand twisting/bending in soluble and transmembrane β-barrel structures

Proteins: Structure, Function and Bioinformatics
  • Nobuaki Kikuchi
  • ,
  • Kazuo Fujiwara
  • ,
  • Masamichi Ikeguchi

86
開始ページ
1231
終了ページ
1241
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.1002/prot.25576

© 2018 Wiley Periodicals, Inc. The majority of β-strands in globular proteins have a right-handed twist and bend. The dominant driving force for β-strand twisting is thought to be inter-strand hydrogen bonds. We previously demonstrated that for water-soluble proteins, both the twisting and bending of β-strand are suppressed by the polar side chains of serine, threonine, and asparagine residues. To determine whether this also holds for transmembrane β-strands, we calculated and statistically analyzed the twist and bend angles of four-residue frames of β-strands in both transmembrane and water-soluble β-barrel proteins with known three-dimensional structures. In the case of transmembrane β-strands, we found that twisting was suppressed even for frames not containing serine, threonine, or asparagine residues. The suppression of twisting in transmembrane β-strands could be attributed to the propagation of the suppressive effect of serine, threonine, and asparagine residues within a frame to the neighboring, hydrogen-bonded strands under the restriction that all strands in the closed barrel structure must have similar twist angles. A similar tendency was also observed for water-soluble β-barrel proteins. We previously showed that the dominant driving force for β-strand bending is hydrophobic interactions involving aromatic residues within and outside the strand. Transmembrane β-barrels have no hydrophobic core; however, rather hydrophilic residues predominate inside the barrel or the β-strands of transmembrane β-barrels have larger bend angles than those of water-soluble β-barrels. Our results reveal that, in transmembrane β-barrel proteins, the glycine-aromatic ring motif is important for generating the β-strand bending necessary for barrel formation.

リンク情報
DOI
https://doi.org/10.1002/prot.25576
PubMed
https://www.ncbi.nlm.nih.gov/pubmed/30019770
URL
https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=85055935852&origin=inward
ID情報
  • DOI : 10.1002/prot.25576
  • ISSN : 0887-3585
  • PubMed ID : 30019770
  • SCOPUS ID : 85055935852

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