Shusei Sato

J-GLOBAL         Last updated: Nov 8, 2018 at 13:40
 
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Name
Shusei Sato
Affiliation
Tohoku University

Research Areas

 

Academic & Professional Experience

 
1993
 - 
2013
Researcher, Kazusa DNA Research Institute
 

Published Papers

 
Malolepszy A, Kelly S, Sørensen KK, James EK, Kalisch C, Bozsoki Z, Panting M, Andersen SU, Sato S, Tao K, Jensen DB, Vinther M, Jong N, Madsen LH, Umehara Y, Gysel K, Berentsen MU, Blaise M, Jensen KJ, Thygesen MB, Sandal N, Andersen KR, Radutoiu S
eLife   7    Oct 2018   [Refereed]
Sugawara M, Takahashi S, Umehara Y, Iwano H, Tsurumaru H, Odake H, Suzuki Y, Kondo H, Konno Y, Yamakawa T, Sato S, Mitsui H, Minamisawa K
Nature communications   9(1) 3139   Aug 2018   [Refereed]
Hashiguchi M, Tanaka H, Muguerza M, Akashi R, Sandal NN, Andersen SU, Sato S
Current protocols in plant biology   3(2) e20070   Jun 2018   [Refereed]
Niwa R, Koyama T, Sato T, Adachi K, Tawaraya K, Sato S, Hirakawa H, Yoshida S, Ezawa T
Scientific reports   8(1) 7419   May 2018   [Refereed]
Nakamura N, Hirakawa H, Sato S, Otagaki S, Matsumoto S, Tabata S, Tanaka Y
DNA research : an international journal for rapid publication of reports on genes and genomes   25(2) 113-121   Apr 2018   [Refereed]
Ishiguro K, Higashino S, Hirakawa H, Sato S, Aizawa Y
Genes & genetic systems   92(5) 243-249   Apr 2018   [Refereed]
Tajima N, Kanesaki Y, Sato S, Yoshikawa H, Maruyama F, Kurokawa K, Ohta H, Nishizawa T, Asayama M, Sato N
Genome announcements   6(6)    Feb 2018   [Refereed]
Balanzà V, Martínez-Fernández I, Sato S, Yanofsky MF, Kaufmann K, Angenent GC, Bemer M, Ferrándiz C
Nature communications   9(1) 565   Feb 2018   [Refereed]
Yamaya-Ito H, Shimoda Y, Hakoyama T, Sato S, Kaneko T, Hossain MS, Shibata S, Kawaguchi M, Hayashi M, Kouchi H, Umehara Y
The Plant journal : for cell and molecular biology   93(1) 5-16   Jan 2018   [Refereed]
Abdelrahman M, El-Sayed M, Sato S, Hirakawa H, Ito SI, Tanaka K, Mine Y, Sugiyama N, Suzuki Y, Yamauchi N, Shigyo M
PloS one   13(1) e0190813   2018   [Refereed]
Nguyen HP, Miwa H, Kaneko T, Sato S, Okazaki S
Genes   8(12)    Dec 2017   [Refereed]
Duan G, Hakoyama T, Kamiya T, Miwa H, Lombardo F, Sato S, Tabata S, Chen Z, Watanabe T, Shinano T, Fujiwara T
The Plant journal : for cell and molecular biology   90(6) 1108-1119   Jun 2017   [Refereed]
Yano K, Aoki S, Liu M, Umehara Y, Suganuma N, Iwasaki W, Sato S, Soyano T, Kouchi H, Kawaguchi M
DNA research : an international journal for rapid publication of reports on genes and genomes   24(2) 193-203   Apr 2017   [Refereed]
Makita Y, Ng KK, Veera Singham G, Kawashima M, Hirakawa H, Sato S, Othman AS, Matsui M
DNA research : an international journal for rapid publication of reports on genes and genomes   24(2) 159-167   Apr 2017   [Refereed]
Sugawara M, Tsukui T, Kaneko T, Ohtsubo Y, Sato S, Nagata Y, Tsuda M, Mitsui H, Minamisawa K
Genome announcements   5(9)    Mar 2017   [Refereed]
Li H, Tsuchimoto S, Harada K, Yamasaki M, Sakai H, Wada N, Alipour A, Sasai T, Tsunekawa A, Tsujimoto H, Ando T, Tomemori H, Sato S, Hirakawa H, Quintero VP, Zamarripa A, Santos P, Hegazy A, Ali AM, Fukui K
Frontiers in plant science   8 1539   2017   [Refereed]
Abdelrahman M, El-Sayed M, Sato S, Hirakawa H, Ito SI, Tanaka K, Mine Y, Sugiyama N, Suzuki Y, Yamauchi N, Shigyo M
PloS one   12(8) e0181784   2017   [Refereed]
Hossain MS, Shrestha A, Zhong S, Miri M, Austin RS, Sato S, Ross L, Huebert T, Tromas A, Torres-Jerez I, Tang Y, Udvardi M, Murray JD, Szczyglowski K
Molecular plant-microbe interactions : MPMI   29(12) 950-964   Dec 2016   [Refereed]
Tajima N, Saitoh K, Sato S, Maruyama F, Ichinomiya M, Yoshikawa S, Kurokawa K, Ohta H, Tabata S, Kuwata A, Sato N
Current genetics   62(4) 887-896   Nov 2016   [Refereed]
Gan X, Hay A, Kwantes M, Haberer G, Hallab A, Ioio RD, Hofhuis H, Pieper B, Cartolano M, Neumann U, Nikolov LA, Song B, Hajheidari M, Briskine R, Kougioumoutzi E, Vlad D, Broholm S, Hein J, Meksem K, Lightfoot D, Shimizu KK, Shimizu-Inatsugi R, Imprialou M, Kudrna D, Wing R, Sato S, Huijser P, Filatov D, X Mayer KF, Mott R, Tsiantis M
Nature plants   2 16189   Nov 2016   [Refereed]
Małolepszy A, Mun T, Sandal N, Gupta V, Dubin M, Urbański D, Shah N, Bachmann A, Fukai E, Hirakawa H, Tabata S, Nadzieja M, Markmann K, Su J, Umehara Y, Soyano T, Miyahara A, Sato S, Hayashi M, Stougaard J, Andersen SU
The Plant journal : for cell and molecular biology   88(2) 306-317   Oct 2016   [Refereed]
Shimoda Y, Hirakawa H, Sato S, Saeki K, Hayashi M
Genome announcements   4(5)    Oct 2016   [Refereed]
Gan X, Hay A, Kwantes M, Haberer G, Hallab A, Ioio RD, Hofhuis H, Pieper B, Cartolano M, Neumann U, Nikolov LA, Song B, Hajheidari M, Briskine R, Kougioumoutzi E, Vlad D, Broholm S, Hein J, Meksem K, Lightfoot D, Shimizu KK, Shimizu-Inatsugi R, Imprialou M, Kudrna D, Wing R, Sato S, Huijser P, Filatov D, Mayer KF, Mott R, Tsiantis M
Nature plants   2(11) 16167   Oct 2016   [Refereed]
Shimomura A, Naka A, Miyazaki N, Moriuchi S, Arima S, Sato S, Hirakawa H, Hayashi M, Maymon M, Hirsch AM, Suzuki A
Molecular plant-microbe interactions : MPMI   29(10) 786-796   Oct 2016   [Refereed]
Minami T, Anda M, Mitsui H, Sugawara M, Kaneko T, Sato S, Ikeda S, Okubo T, Tsurumaru H, Minamisawa K
Microbes and environments   31(3) 268-278   Sep 2016   [Refereed]
Shah N, Hirakawa H, Kusakabe S, Sandal N, Stougaard J, Schierup MH, Sato S, Andersen SU
DNA research : an international journal for rapid publication of reports on genes and genomes      Jul 2016   [Refereed]
Tanaka H, Hirakawa H, Kosugi S, Nakayama S, Ono A, Watanabe A, Hashiguchi M, Gondo T, Ishigaki G, Muguerza M, Shimizu K, Sawamura N, Inoue T, Shigeki Y, Ohno N, Tabata S, Akashi R, Sato S
DNA research : an international journal for rapid publication of reports on genes and genomes   23(2) 171-180   Apr 2016   [Refereed]
Shimada S, Makita Y, Kuriyama-Kondou T, Kawashima M, Mochizuki Y, Hirakawa H, Sato S, Toyoda T, Matsui M
DNA research : an international journal for rapid publication of reports on genes and genomes   22(6) 485-493   Dec 2015   [Refereed]
Faruque OM, Miwa H, Yasuda M, Fujii Y, Kaneko T, Sato S, Okazaki S
Applied and environmental microbiology   81(19) 6710-6717   Oct 2015   [Refereed]
Qiu L, Lin JS, Xu J, Sato S, Parniske M, Wang TL, Downie JA, Xie F
PLoS genetics   11(10) e1005623   Oct 2015   [Refereed]
Hirose Y, Suda K, Liu YG, Sato S, Nakamura Y, Yokoyama K, Yamamoto N, Hanano S, Takita E, Sakurai N, Suzuki H, Nakamura Y, Kaneko T, Yano K, Tabata S, Shibata D
The Plant journal : for cell and molecular biology   83(6) 1114-1122   Sep 2015   [Refereed]
Iida T, Itakura M, Anda M, Sugawara M, Isawa T, Okubo T, Sato S, Chiba-Kakizaki K, Minamisawa K
Applied and environmental microbiology   81(12) 4143-4154   Jun 2015   [Refereed]
Shin Okazaki, Rujirek Noisangiam, Takashi Okubo, Takakazu Kaneko, Kenshiro Oshima, Masahira Hattori, Kamonluck Teamtisong, Pongpan Songwattana, Panlada Tittabutr, Nantakorn Boonkerd, Kazuhiko Saeki, Shusei Sato, Toshiki Uchiumi, Kiwamu Minamisawa, Neung Teaumroong
PLoS ONE   10(2) e0117392   Feb 2015   [Refereed]
Bradyrhizobium sp. DOA9 isolated from the legume Aeschynomene americana exhibited a broad host range and divergent nodulation (nod) genes compared with other members of the Bradyrhizobiaceae. Genome analysis of DOA9 revealed that its genome compri...
Hikaru Tsukazaki, Shigenori Yaguchi, Shigenori Yaguchi, Shigenori Yaguchi, Shusei Sato, Shusei Sato, Hideki Hirakawa, Yuichi Katayose, Hiroyuki Kanamori, Kanako Kurita, Takeshi Itoh, Masahiko Kumagai, Masahiko Kumagai, Satoshi Mizuno, Satoshi Mizuno, Masao Hamada, Hiroyuki Fukuoka, Ken ichiro Yamashita, John A. McCallum, Masayoshi Shigyo, Tadayuki Wako
Molecular Breeding   35 1-11   Jan 2015
Bunching onion (Allium fistulosum L.) is one of the most important vegetables in Japan. Although expressed sequence tag (EST)-derived markers for bulb onion (A. cepa L.) have been developed from medium-scale sequencing, comparable EST sequences in...
Sugiyama A, Fukuda S, Takanashi K, Yoshioka M, Yoshioka H, Narusaka Y, Narusaka M, Kojima M, Sakakibara H, Shitan N, Sato S, Tabata S, Kawaguchi M, Yazaki K
PloS one   10(9) e0139127   2015   [Refereed]
Joyce A. Cartagena, Motoaki Seki, Motoaki Seki, Maho Tanaka, Takaki Yamauchi, Shusei Sato, Shusei Sato, Hideki Hirakawa, Takashi Tsuge
Plant Molecular Biology Reporter      Oct 2014
Jatropha is known for its ability to grow in marginal lands and drought prone areas receiving limited amounts of rainfall. Accordingly, gene discovery in Jatropha will be useful for providing a source of genetic information for the improvement of ...
Shusei Sato, Hideki Hirakawa, Suguru Tsuchimoto, Hiroe Sakai, Nakako Shibagaki, Sachihiro Matsunaga, Sachihiro Matsunaga, Kiichi Fukui, Kiichi Fukui, Satoshi Tabata
Jatropha, Challenges for a New Energy Crop   2 563-576   May 2014
The recent progress in DNA sequencing technology has allowed us to acquire information on the structures of whole genomes of various agronomically important plants in a relatively short period of time. In order to understand the genetic systems ca...
Naoyuki Tajima, Naoyuki Tajima, Shusei Sato, Fumito Maruyama, Ken Kurokawa, Ken Kurokawa, Hiroyuki Ohta, Hiroyuki Ohta, Satoshi Tabata, Kohsuke Sekine, Kohsuke Sekine, Takashi Moriyama, Takashi Moriyama, Naoki Sato, Naoki Sato
Journal of Plant Research   127 389-397   Jan 2014
We determined the complete nucleotide sequence of the plastid genome of the unicellular marine red alga Porphyridium purpureum strain NIES 2140, belonging to the unsequenced class Porphyridiophyceae. The genome is a circular DNA composed of 217,69...
Hideki Hirakawa, Kenta Shirasawa, Shunichi Kosugi, Kosuke Tashiro, Shinobu Nakayama, Manabu Yamada, Mistuyo Kohara, Akiko Watanabe, Yoshie Kishida, Tsunakazu Fujishiro, Hisano Tsuruoka, Chiharu Minami, Shigemi Sasamoto, Midori Kato, Keiko Nanri, Akiko Komaki, Tomohiro Yanagi, Qin Guoxin, Fumi Maeda, Masami Ishikawa, Satoru Kuhara, Shusei Sato, Shusei Sato, Satoshi Tabata, Sachiko N. Isobe
DNA Research   21 169-181   Jan 2014
Cultivated strawberry (Fragaria x ananassa) is octoploid and shows allogamous behaviour. The present study aims at dissecting this octoploid genome through comparison with its wild relatives, F. iinumae, F. nipponica, F. nubicola, and F. orientali...
Takuya Suzaki, Takuya Suzaki, Momoyo Ito, Emiko Yoro, Emiko Yoro, Shusei Sato, Hideki Hirakawa, Naoya Takeda, Naoya Takeda, Masayoshi Kawaguchi, Masayoshi Kawaguchi
Development (Cambridge)   141 2441-2445   Jan 2014
Many leguminous plants have a unique ability to reset and alter the fate of differentiated root cortical cells to form new organs of nitrogen-fixing root nodules during legume-Rhizobium symbiosis. Recent genetic studies on the role of cytokinin si...
Tomomi Wakabayashi, Hana Oh, Masayoshi Kawaguchi, Kyuya Harada, Shusei Sato, Hajime Ikeda, Hiroaki Setoguchi
Journal of Plant Research   128 221   Jan 2014
Shinji Fukuda, Keiichiro Ishimoto, Shusei Sato, Shingo Terakami, Toshiya Yamamoto, Naofumi Hiehata
Tree Genetics and Genomes   10 875-883   Jan 2014
Loquat canker disease, caused by Pseudomonas syringae pv. eriobotryae, is one of the most harmful diseases of commercial cultivars of loquat (Eriobotrya japonica). To introgress resistance to loquat canker, we identified the linkage group and posi...
Mark Held, Mark Held, Mark Held, Hongwei Hou, Mandana Miri, Mandana Miri, Christian Huynh, Loretta Ross, Md Shakhawat Hossain, Shusei Sato, Shusei Sato, Satoshi Tabata, Jillian Perry, Trevor L. Wang, Krzysztof Szczyglowski, Krzysztof Szczyglowski
Plant Cell   26 678-694   Jan 2014
Previous analysis of the Lotus histidine kinase1 (Lhk1) cytokinin receptor gene has shown that it is required and also sufficient for nodule formation in Lotus japonicus. The L. japonicus mutant carrying the loss-of-function lhk1-1 allele is hyper...
Hwi Joong Yoon, Hwi Joong Yoon, Md Shakhawat Hossain, Md Shakhawat Hossain, Mark Held, Mark Held, Mark Held, Hongwei Hou, Hongwei Hou, Marilyn Kehl, Marilyn Kehl, Alexandre Tromas, Shusei Sato, Satoshi Tabata, Stig Uggerhøj Andersen, Jens Stougaard, Loretta Ross, Krzysztof Szczyglowski, Krzysztof Szczyglowski
Plant Journal   78 811-821   Jan 2014
Summary A symbiotic mutant of Lotus japonicus, called sunergos1-1 (suner1-1), originated from a har1-1 suppressor screen. suner1-1 supports epidermal infection by Mesorhizobium loti and initiates cell divisions for organogenesis of nodule primordi...
Teruyuki Hayashi, Teruyuki Hayashi, Yoshikazu Shimoda, Shusei Sato, Shusei Sato, Satoshi Tabata, Haruko Imaizumi-Anraku, Makoto Hayashi
Plant Journal   77 146-159   Jan 2014
For the establishment of an effective root nodule symbiosis, a coordinated regulation of the infection processes between the epidermis and cortex is required. However, it remains unclear whether the symbiotic genes identified so far are involved i...
Masafumi Yagi, Shunichi Kosugi, Hideki Hirakawa, Akemi Ohmiya, Koji Tanase, Taro Harada, Kyutaro Kishimoto, Masayoshi Nakayama, Kazuo Ichimura, Takashi Onozaki, Hiroyasu Yamaguchi, Nobuhiro Sasaki, Nobuhiro Sasaki, Taira Miyahara, Yuzo Nishizaki, Yoshihiro Ozeki, Noriko Nakamura, Takamasa Suzuki, Takamasa Suzuki, Yoshikazu Tanaka, Shusei Sato, Shusei Sato, Kenta Shirasawa, Sachiko Isobe, Yoshinori Miyamura, Akiko Watanabe, Shinobu Nakayama, Yoshie Kishida, Mitsuyo Kohara, Satoshi Tabata
DNA Research   21 231-241   Jan 2014
The whole-genome sequence of carnation (Dianthus caryophyllus L.) cv. 'Francesco' was determined using a combination of different new-generation multiplex sequencing platforms. The total length of the non-redundant sequences was 568 887 315 bp, co...
Junji Uchiyama, Ryosuke Asakura, Atsushi Moriyama, Yuko Kubo, Yousuke Shibata, Yuka Yoshino, Hiroko Tahara, Ayumi Matsuhashi, Shusei Sato, Yasukazu Nakamura, Satoshi Tabata, Hisataka Ohta, Hisataka Ohta
Plant Physiology and Biochemistry   81 36-43   Jan 2014
In this study, the genes expressed in response to low pH stress were identified in the unicellular cyanobacterium Synechocystis sp. PCC 6803 using DNA microarrays. The expression of slr0967 and sll0939 constantly increased throughout 4-h acid stre...
Shingo Terakami, Chikako Nishitani, Miyuki Kunihisa, Kenta Shirasawa, Shusei Sato, Satoshi Tabata, Kanako Kurita, Hiroyuki Kanamori, Yuichi Katayose, Norio Takada, Toshihiro Saito, Toshiya Yamamoto
Tree Genetics and Genomes   10 853-863   Jan 2014
The development of single nucleotide polymorphism (SNP) markers in Japanese pear (Pyrus pyrifolia Nakai) offers the opportunity to use DNA markers for marker-assisted selection in breeding programs because of their high abundance, codominant inher...
Walid El-Rodeny, Mitsuhiro Kimura, Hideki Hirakawa, Attia Sabah, Kenta Shirasawa, Shusei Sato, Satoshi Tabata, Shigemi Sasamoto, Akiko Watanabe, Kumiko Kawashima, Midori Kato, Tsuyuko Wada, Hisano Tsuruoka, Chika Takahashi, Chiharu Minami, Keiko Nanri, Shinobu Nakayama, Mitsuyo Kohara, Manabu Yamada, Yoshie Kishida, Tsunakazu Fujishiro, Sachiko Isobe
Breeding Science   64 252-263   Jan 2014
To develop a high density linkage map in faba bean, a total of 1,363 FBES (Faba bean expressed sequence tag [EST]-derived simple sequence repeat [SSR]) markers were designed based on 5,090 non-redundant ESTs developed in this study. A total of 109...
Hideki Hirakawa, Kenta Shirasawa, Koji Miyatake, Tsukasa Nunome, Satomi Negoro, Akio Ohyama, Hirotaka Yamaguchi, Shusei Sato, Shusei Sato, Sachiko Isobe, Satoshi Tabata, Hiroyuki Fukuoka
DNA Research   21 649-660   Jan 2014
Unlike other important Solanaceae crops such as tomato, potato, chili pepper, and tobacco, all of which originated in South America and are cultivated worldwide, eggplant (Solanum melongena L.) is indigenous to the Old World and in this respect it...
Tomomi Wakabayashi, Hana Oh, Masayoshi Kawaguchi, Kyuya Harada, Shusei Sato, Hajime Ikeda, Setoguchi Hiroaki
Journal of Plant Research   127 651-660   Jan 2014
In plants, timing of flowering is an essential factor that controls the survival rates of descendants. The circadian clock genes E1 and GIGANTEA (GI) play a central role in transmitting signals to FLOWERING LOCUS T (FT) in leguminous plants. Lotus...
Shusei Sato, Kenta Shirasawa, Satoshi Tabata
Plant Biotechnology   30 257-263   Nov 2013
Over the last 10 years, considerable efforts have been undertaken to develop genomic resources in tomato, including genomic clones, physical maps, DNA markers, mapping populations, and genetic linkage maps. Such resources facilitate the investigat...
Shin Okazaki, Takakazu Kaneko, Shusei Sato, Kazuhiko Saeki, Kazuhiko Saeki
Proceedings of the National Academy of Sciences of the United States of America   110 17131-17136   Oct 2013
Root-nodule symbiosis between leguminous plants and nitrogenfixing bacteria (rhizobia) involves molecular communication between the two partners. Key components for the establishment of symbiosis are rhizobium-derived lipochitooligosaccharides (No...
Kojiro Takanashi, Kengo Yokosho, Kazuhiko Saeki, Akifumi Sugiyama, Shusei Sato, Satoshi Tabata, Jian Feng Ma, Kazufumi Yazaki
Plant and Cell Physiology   54 1749   Oct 2013
Martin Groth, Martin Groth, Sonja Kosuta, Sonja Kosuta, Caroline Gutjahr, Kristina Haage, Simone Liesel Hardel, Miriam Schaub, Andreas Brachmann, Shusei Sato, Satoshi Tabata, Kim Findlay, Trevor L. Wang, Martin Parniske, Martin Parniske
Plant Journal   75 117-129   Jul 2013
Summary Arbuscular mycorrhiza (AM) fungi form nutrient-acquiring symbioses with the majority of higher plants. Nutrient exchange occurs via arbuscules, highly branched hyphal structures that are formed within root cortical cells. With a view to id...
Hiroko Kasai-Maita, Hiroko Kasai-Maita, Hideki Hirakawa, Yasukazu Nakamura, Yasukazu Nakamura, Takakazu Kaneko, Takakazu Kaneko, Kumiko Miki, Jumpei Maruya, Jumpei Maruya, Jumpei Maruya, Shin Okazaki, Shin Okazaki, Satoshi Tabata, Kazuhiko Saeki, Shusei Sato, Shusei Sato
Microbes and Environments   28 275-278   Jun 2013
To shed light on the breadth of the host range of Mesorhizobium loti strain NZP2037, we determined the sequence of the NZP2037 symbiosis island and compared it with those of strain MAFF303099 and R7A islands. The determined 533 kb sequence of NZP2...
Hideki Hirakawa, Kenta Shirasawa, Akio Ohyama, Hiroyuki Fukuoka, Koh Aoki, Christophe Rothan, Shusei Sato, Sachiko Isobe, Satoshi Tabata
DNA Research   20 221-233   Jun 2013
The genotype data of 7054 single nucleotide polymorphism (SNP) loci in 40 tomato lines, including inbred lines, F1 hybrids, and wild relatives, were collected using Illumina's Infinium and GoldenGate assay platforms, the latter of which was utiliz...
Kojiro Takanashi, Kengo Yokosho, Kazuhiko Saeki, Akifumi Sugiyama, Shusei Sato, Satoshi Tabata, Jian Feng Ma, Kazufumi Yazaki
Plant and Cell Physiology   54 585-594   Apr 2013
Symbiotic nitrogen fixation by intracellular rhizobia within legume root nodules requires the exchange of nutrients between host plant cells and their resident bacteria. While exchanged molecules imply nitrogen compounds, carbohydrates and also va...
Frédéric Lota, Sarah Wegmüller, Sarah Wegmüller, Benjamin Buer, Shusei Sato, Andrea Bräutigam, Benjamin Hanf, Marcel Bucher
Plant Journal   74 280-293   Apr 2013
The majority of land plants live in symbiosis with arbuscular mycorrhizal fungi from the phylum Glomeromycota. This symbiosis improves acquisition of phosphorus (P) by the host plant in exchange for carbohydrates, especially under low-P availabili...
Masahiro Takahara, Masahiro Takahara, Shimpei Magori, Takashi Soyano, Satoru Okamoto, Chie Yoshida, Koji Yano, Shusei Sato, Satoshi Tabata, Katsushi Yamaguchi, Shuji Shigenobu, Shuji Shigenobu, Naoya Takeda, Naoya Takeda, Takuya Suzaki, Takuya Suzaki, Masayoshi Kawaguchi, Masayoshi Kawaguchi
Plant and Cell Physiology   54 433-447   Apr 2013
The interaction of legumes with N2-fixing bacteria collectively called rhizobia results in root nodule development. The number of nodules formed is tightly restricted through the systemic negative feedback control by the host called autoregulation...
Sachiko N. Isobe, Hideki Hirakawa, Shusei Sato, Fumi Maeda, Masami Ishikawa, Toshiki Mori, Yuko Yamamoto, Kenta Shirasawa, Mitsuhiro Kimura, Masanobu Fukami, Fujio Hashizume, Tomoko Tsuji, Shigemi Sasamoto, Midori Kato, Keiko Nanri, Hisano Tsuruoka, Chiharu Minami, Chika Takahashi, Tsuyuko Wada, Akiko Ono, Kumiko Kawashima, Naomi Nakazaki, Yoshie Kishida, Mitsuyo Kohara, Shinobu Nakayama, Manabu Yamada, Tsunakazu Fujishiro, Akiko Watanabe, Satoshi Tabata
DNA Research   20 79-92   Feb 2013
The cultivated strawberry (Fragaria× ananassa) is an octoploid (2n = 8x = 56) of the Rosaceae family whose genomic architecture is still controversial. Several recent studies support the AAA′A′BBB′ B′ model, but its complexity has hindered genetic...
Takahiro Tsukui, Shima Eda, Takakazu Kaneko, Shusei Sato, Shin Okazaki, Kaori Kakizaki-Chiba, Manabu Itakura, Hisayuki Mitsui, Akifumi Yamashita, Kimihiro Terasawa, Kiwamu Minamisawa
Applied and Environmental Microbiology   79 1048-1051   Feb 2013
The rhcJ and ttsI mutants of Bradyrhizobium japonicum USDA122 for the type III protein secretion system (T3SS) failed to secrete typical effector proteins and gained the ability to nodulate Rj2 soybean plants (Hardee), which are symbiotically inco...
Rumi Tominaga-Wada, Yuka Nukumizu, Shusei Sato, Takuji Wada
PLoS ONE   8    Jan 2013
In Arabidopsis thaliana the CPC-like MYB transcription factors [CAPRICE (CPC), TRIPTYCHON (TRY), ENHANCER OF TRY AND CPC 1, 2, 3/CPC-LIKE MYB 3 (ETC1, ETC2, ETC3/CPL3), TRICHOMELESS 1, 2/CPC-LIKE MYB 4 (TCL1, TCL2/CPL4)] and the bHLH transcription...
H. Tsukazaki, S. Yaguchi, K. Yamashita, A. Kojima, T. Wako, S. Sato, M. Shigyo
Acta Horticulturae   969 85-90   Dec 2012
Linkage maps have been developed for bulb onion (Allium cepa L.) and bunching onion (A. fistulosum L.). It is considered that a high level of macrosynteny exists between these 2 species since they belong to the section Cepa and have the same chrom...
Erika Asamizu, Kenta Shirasawa, Hideki Hirakawa, Shusei Sato, Satoshi Tabata, Kentaro Yano, Tohru Ariizumi, Daisuke Shibata, Hiroshi Ezura
International Journal of Plant Genomics   2012    Dec 2012
A total of 93,682 BAC-end sequences (BESs) were generated from a dwarf model tomato, cv. Micro-Tom. After removing repetitive sequences, the BESs were similarity searched against the reference tomato genome of a standard cultivar, "Heinz 1706." By...
Jinqiu Liao, Jinqiu Liao, Sylvia Singh, Md S. Hossain, Md S. Hossain, Stig U. Andersen, Loretta Ross, Dario Bonetta, Yonghong Zhou, Shusei Sato, Satoshi Tabata, Jens Stougaard, Krzysztof Szczyglowski, Krzysztof Szczyglowski, Martin Parniske
Plant Journal   72 572-584   Nov 2012
One of the earliest responses of legumes to symbiotic signalling is oscillation of the calcium concentration in the nucleoplasm of root epidermal cells. Integration and decoding of the calcium-spiking signal involve a calcium- and calmodulin-depen...
Takashi Okubo, Takahiro Tsukui, Hiroko Maita, Hiroko Maita, Shinobu Okamoto, Kenshiro Oshima, Takatomo Fujisawa, Akihiro Saito, Hiroyuki Futamata, Reiko Hattori, Yumi Shimomura, Shin Haruta, Sho Morimoto, Yong Wang, Yoriko Sakai, Masahira Hattori, Shin Ichi Aizawa, Kenji V P Nagashima, Sachiko Masuda, Tsutomu Hattori, Akifumi Yamashita, Zhihua Bao, Masahito Hayatsu, Hiromi Kajiya-Kanegae, Ikuo Yoshinaga, Kazunori Sakamoto, Koki Toyota, Mitsuteru Nakao, Mitsuyo Kohara, Mizue Anda, Rieko Niwa, Park Jung-Hwan, Reiko Sameshima-Saito, Shin Ichi Tokuda, Sumiko Yamamoto, Syuji Yamamoto, Tadashi Yokoyama, Tomoko Akutsu, Yasukazu Nakamura, Yuka Nakahira-Yanaka, Yuko Takada Hoshino, Hideki Hirakawa, Hisayuki Mitsui, Kimihiro Terasawa, Manabu Itakura, Shusei Sato, Shusei Sato, Wakako Ikeda-Ohtsubo, Natsuko Sakakura, Eli Kaminuma, Kiwamu Minamisawa
Microbes and Environments   27 306-315   Oct 2012
Bradyrhizobium sp. S23321 is an oligotrophic bacterium isolated from paddy field soil. Although S23321 is phylogenetically close to Bradyrhizobium japonicum USDA110, a legume symbiont, it is unable to induce root nodules in siratro, a legume often...
Shusei Sato, Satoshi Tabata, Hideki Hirakawa, Erika Asamizu, Kenta Shirasawa, Sachiko Isobe, Takakazu Kaneko, Yasukazu Nakamura, Daisuke Shibata, Koh Aoki, Michael Egholm, James Knight, Robert Bogden, Changbao Li, Changbao Li, Yang Shuang, Xun Xu, Shengkai Pan, Shifeng Cheng, Xin Liu, Yuanyuan Ren, Jun Wang, Alessandro Albiero, Francesca Dal Pero, Sara Todesco, Joyce Van Eck, Robert M. Buels, Aureliano Bombarely, Joseph R. Gosselin, Minyun Huang, Jonathan A. Leto, Naama Menda, Susan Strickler, Linyong Mao, Shan Gao, Isaak Y. Tecle, Thomas York, Yi Zheng, Julia T. Vrebalov, Jemin Lee, Silin Zhong, Lukas A. Mueller, Willem J. Stiekema, Paolo Ribeca, Tyler Alioto, Wencai Yang, Sanwen Huang, Yongchen Du, Zhonghua Zhang, Jianchang Gao, Yanmei Guo, Xiaoxuan Wang, Ying Li, Jun He, Chuanyou Li, Zhukuan Cheng, Jianru Zuo, Jianfeng Ren, Jiuhai Zhao, Liuhua Yan, Hongling Jiang, Bao Wang, Hongshuang Li, Zhenjun Li, Fuyou Fu, Bingtang Chen, Bin Han, Qi Feng, Danlin Fan, Ying Wang, Hongqing Ling, Yongbiao Xue, Doreen Ware, W. Richard McCombie, Zachary B. Lippman, Jer Ming Chia, Ke Jiang, Shiran Pasternak, Laura Gelley, Melissa Kramer, Lorinda K. Anderson, Song Bin Chang, Suzanne M. Royer, Lindsay A. Shearer, Stephen M. Stack, Jocelyn K C Rose, Yimin Xu, Nancy Eannetta, Antonio J. Matas, Ryan McQuinn, Steven D. Tanksley, Francisco Camara, Roderic Guigó, Stephane Rombauts, Jeffrey Fawcett, Yves Van De Peer, Dani Zamir, Chunbo Liang, Manuel Spannagl, Heidrun Gundlach
Nature   485 635-641   Oct 2012
Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome seq...
Md Shakhawat Hossain, Md Shakhawat Hossain, Jinqiu Liao, Euan K. James, Shusei Sato, Satoshi Tabata, Anna Jurkiewicz, Lene H. Madsen, Jens Stougaard, Loretta Ross, Krzysztof Szczyglowski, Krzysztof Szczyglowski
Plant Physiology   160 917-928   Oct 2012
Remodeling of the plant cell cytoskeleton precedes symbiotic entry of nitrogen-fixing bacteria within the host plant roots. Here we identify a Lotus japonicus gene encoding a predicted ACTIN-RELATED PROTEIN COMPONENT1 (ARPC1) as essential for rhiz...
Tsuneo Hakoyama, Tsuneo Hakoyama, Ryo Oi, Kazuya Hazuma, Eri Suga, Yuka Adachi, Mayumi Kobayashi, Rie Akai, Shusei Sato, Eigo Fukai, Satoshi Tabata, Satoshi Shibata, Guo Jiang Wu, Yoshihiro Hase, Atsushi Tanaka, Masayoshi Kawaguchi, Masayoshi Kawaguchi, Hiroshi Kouchi, Yosuke Umehara, Norio Suganuma
Plant Physiology   160 897-905   Oct 2012
Soluble N-Ethylmaleimide Sensitive Factor Attachment Protein Receptor (SNARE) proteins are crucial for signal transduction and development in plants. Here, we investigate a Lotus japonicus symbiotic mutant defective in one of the SNARE proteins. W...
Hideki Hirakawa, Suguru Tsuchimoto, Hiroe Sakai, Shinobu Nakayama, Tsunakazu Fujishiro, Yoshie Kishida, Mitsuyo Kohara, Akiko Watanabe, Manabu Yamada, Tomoyuki Aizu, Atsushi Toyoda, Asao Fujiyama, Asao Fujiyama, Satoshi Tabata, Kiichi Fukui, Shusei Sato
Plant Biotechnology   29 123-130   Aug 2012
In order to upgrade the genome sequence information of J. curcas L., we integrated de novo assembly of a total of 537 million paired-end reads generated from the Illumina sequencing platform into the current genome assembly which was obtained by a...
Zhengjun Xia, Zhengjun Xia, Satoshi Watanabe, Tetsuya Yamada, Yasutaka Tsubokura, Hiroko Nakashima, Hong Zhai, Toyoaki Anai, Shusei Sato, Toshimasa Yamazaki, Shixiang Lü, Hongyan Wu, Satoshi Tabata, Kyuya Harada
Proceedings of the National Academy of Sciences of the United States of America   109    Aug 2012
The complex and coordinated regulation of flowering has high ecological and agricultural significance. The maturity locus E1 has a large impact on flowering time in soybean, but the molecular basis for the E1 locus is largely unknown. Through posi...
Niels Sandal, Haojie Jin, Dulce Nombre Rodriguez-Navarro, Francisco Temprano, Cristina Cvitanich, Andreas Brachmann, Shusei Sato, Masayoshi Kawaguchi, Satoshi Tabata, Martin Parniske, Jose E. Ruiz-Sainz, Stig U. Andersen, Jens Stougaard
DNA Research   19 317-323   Aug 2012
Model legumes such as Lotus japonicus have contributed significantly to the understanding of symbiotic nitrogen fixation. This insight is mainly a result of forward genetic screens followed by map-based cloning to identify causal alleles. The L. j...
J. Ferreira, S. Mendes, M. Dall'Agnol, N. Sandal, S. Sato, A. Pedrosa-Harand
Cytogenetic and Genome Research   137 42-49   Aug 2012
A comparative cytogenetic map was built for Lotusuliginosus (2n = 12), expanding previous analyses that revealed intra- and interspecific chromosomal rearrangements in the model legume L. japonicus, L. filicaulis, and L. burttii. This species is p...
R. Kataoka, M. Hara, S. Kato, S. Isobe, S. Sato, S. Tabata, N. Ohmido
Cytogenetic and Genome Research   137 60-69   Aug 2012
Red clover (Trifolium pratense L.) is a forage legume and an allogamous diploid plant (2n = 14; 440 Mb). Here, we examine the 7 prometaphase chromosomes of red clover using fluorescence in situ hybridization (FISH) with ribosomal RNA sequences, pe...
Padmalatha Koilkonda, Shusei Sato, Satoshi Tabata, Kenta Shirasawa, Hideki Hirakawa, Hiroe Sakai, Shigemi Sasamoto, Akiko Watanabe, Tsuyuko Wada, Yoshie Kishida, Hisano Tsuruoka, Tsunakazu Fujishiro, Manabu Yamada, Mitsuyo Kohara, Shigeru Suzuki, Makoto Hasegawa, Hiroyuki Kiyoshima, Sachiko Isobe
Molecular Breeding   30 125-138   Jun 2012
Large-scale development of expressed sequence tag simple sequence repeat (EST-SSR) markers was performed in peanut (Arachis hypogaea L.) to obtain more informative genetic markers. A total of 10,102 potential non-redundant EST sequences, including...
Kioumars Ghamkhar, Kioumars Ghamkhar, Sachiko Isobe, Phillip G H Nichols, Phillip G H Nichols, Troy Faithfull, Megan H. Ryan, Richard Snowball, Shusei Sato, Rudi Appels
Molecular Breeding   30 213-226   Jun 2012
This study reports on the construction of the first genetic maps of subterranean clover (Trifolium subterraneum L.), a diploid, inbreeding annual pasture legume, and alignment of its linkage groups with those of red clover (T. pratense L.) and Med...
Dale Shelton, Maria Stranne, Lisbeth Mikkelsen, Nima Pakseresht, Tracey Welham, Hideki Hiraka, Satoshi Tabata, Shusei Sato, Suzanne Paquette, Trevor L. Wang, Cathie Martin, Cathie Martin, Paul Bailey
Plant Physiology   159 531-547   Jun 2012
Isoflavonoids are a class of phenylpropanoids made by legumes, and consumption of dietary isoflavonoids confers benefits to human health. Our aim is to understand the regulation of isoflavonoid biosynthesis. Many studies have shown the importance ...
Rumi Tominaga-Wada, Yuka Nukumizu, Shusei Sato, Tomohiko Kato, Satoshi Tabata, Takuji Wada
Bioscience, Biotechnology and Biochemistry   76 883-887   May 2012
Epidermal cell differentiation in Arabidopsis is studied as a model system to understand the mechanisms that determine the developmental end state of plant cells. MYB-related transcription factors are involved in cell fate determination. To examin...
Sachiko N. Isobe, Hiroshi Hisano, Hiroshi Hisano, Shusei Sato, Hideki Hirakawa, Kenji Okumura, Kenta Shirasawa, Shigemi Sasamoto, Akiko Watanabe, Tsuyuko Wada, Yoshie Kishida, Hisano Tsuruoka, Tsunakazu Fujishiro, Manabu Yamada, Mistuyo Kohara, Satoshi Tabata
G3: Genes, Genomes, Genetics   2 607-617   May 2012
White clover (Trifolium repens L.) is an allotetraploid species (2n 1/4 4X 1/4 32) that is widely distributed in temperate regions and cultivated as a forage legume. In this study, we developed expressed sequence tag (EST)-derived simple sequence ...
Kojiro Takanashi, Akifumi Sugiyama, Shusei Sato, Satoshi Tabata, Kazufumi Yazaki
Journal of Plant Physiology   169 322-326   Feb 2012
Legume plants develop root nodules through symbiosis with rhizobia, and fix atmospheric nitrogen in this symbiotic organ. Development of root nodules is regulated by many metabolites including phytohormones. Previously, we reported that auxin is s...
Eigo Fukai, Eigo Fukai, Takashi Soyano, Yosuke Umehara, Shinobu Nakayama, Hideki Hirakawa, Satoshi Tabata, Shusei Sato, Makoto Hayashi
Plant Journal   69 720-730   Feb 2012
We established a gene tagging population of the model legume Lotus japonicus using an endogenous long terminal repeat (LTR) retrotransposon Lotus Retrotransposon 1 (LORE1). The population was composed of 2450 plant lines, from which a total of 453...
Tsuneo Hakoyama, Tsuneo Hakoyama, Tsuneo Hakoyama, Kaori Niimi, Takeshi Yamamoto, Sawa Isobe, Shusei Sato, Yasukazu Nakamura, Satoshi Tabata, Hirotaka Kumagai, Yosuke Umehara, Katja Brossuleit, Katja Brossuleit, Katja Brossuleit, Thomas R. Petersen, Niels Sandal, Jens Stougaard, Michael K. Udvardi, Michael K. Udvardi, Masanori Tamaoki, Masayoshi Kawaguchi, Hiroshi Kouchi, Norio Suganuma
Plant and Cell Physiology   53 225-236   Jan 2012
Legume plants establish a symbiotic association with bacteria called rhizobia, resulting in the formation of nitrogen-fixing root nodules. A Lotus japonicus symbiotic mutant, sen1, forms nodules that are infected by rhizobia but that do not fix ni...
Takakazu Kaneko, Takakazu Kaneko, Hiroko Maita, Hiroko Maita, Hideki Hirakawa, Nobukazu Uchiike, Kiwamu Minamisawa, Akiko Watanabe, Shusei Sato, Shusei Sato
Genes   2 763-787   Dec 2011
The complete nucleotide sequence of the genome of the soybean symbiont Bradyrhizobium japonicum strain USDA6 T was determined. The genome of USDA6 T is a single circular chromosome of 9,207,384 bp. The genome size is similar to that of the genome ...
Hideki Hirakawa, Yasukazu Nakamura, Yasukazu Nakamura, Takakazu Kaneko, Takakazu Kaneko, Sachiko Isobe, Hiroe Sakai, Tomohiko Kato, Takashi Hibino, Shigemi Sasamoto, Akiko Watanabe, Manabu Yamada, Shinobu Nakayama, Tsunakazu Fujishiro, Yoshie Kishida, Mitsuyo Kohara, Satoshi Tabata, Shusei Sato
Plant Biotechnology   28 471-480   Dec 2011
The genetic information in the genome of Eucalyptus camaldulensis was investigated by sequencing the genome and the cDNA using a combination of the conventional Sanger method and next-generation sequencing methods, followed by intensive bioinforma...
Akihiro Suzuki, Akihiro Suzuki, Lalith Suriyagoda, Lalith Suriyagoda, Tamaki Shigeyama, Akiyoshi Tominaga, Akiyoshi Tominaga, Masayo Sasaki, Yoshimi Hiratsuka, Aya Yoshinaga, Susumu Arima, Susumu Arima, Sakae Agarie, Sakae Agarie, Sakae Agarie, Tatsuya Sakai, Tatsuya Sakai, Sayaka Inada, Yusuke Jikumaru, Yuji Kamiya, Toshiki Uchiumi, Mikiko Abe, Masatsugu Hashiguchi, Ryo Akashi, Shusei Sato, Takakazu Kaneko, Takakazu Kaneko, Satoshi Tabata, Ann M. Hirsch
Proceedings of the National Academy of Sciences of the United States of America   108 16837-16842   Oct 2011
Light is critical for supplying carbon to the energetically expensive, nitrogen-fixing symbiosis between legumes and rhizobia. Here, we show that phytochrome B (phyB) is part of the monitoring system to detect suboptimal light conditions, which no...
Adam M. Takos, Camilla Knudsen, Daniela Lai, Rubini Kannangara, Lisbeth Mikkelsen, Mohammed S. Motawia, Carl E. Olsen, Shusei Sato, Satoshi Tabata, Kirsten Jørgensen, Birger L. Møller, Fred Rook
Plant Journal   68 273-286   Oct 2011
Cyanogenic glucosides are amino acid-derived defence compounds found in a large number of vascular plants. Their hydrolysis by specific β-glucosidases following tissue damage results in the release of hydrogen cyanide. The cyanogenesis deficient1 ...
Naoyuki Tajima, Shusei Sato, Fumito Maruyama, Takakazu Kaneko, Naobumi V. Sasaki, Ken Kurokawa, Hiroyuki Ohta, Yu Kanesaki, Hirofumi Yoshikawa, Hirofumi Yoshikawa, Satoshi Tabata, Masahiko Ikeuchi, Naoki Sato
DNA Research   18 393-399   Oct 2011
Synechocystis sp. PCC 6803 is the most popular cyanobacterial strain, serving as a standard in the research fields of photosynthesis, stress response, metabolism and so on. A glucose-tolerant (GT) derivative of this strain was used for genome sequ...
Xiaowu Wang, Hanzhong Wang, Jun Wang, Jun Wang, Jun Wang, Rifei Sun, Jian Wu, Shengyi Liu, Yinqi Bai, Jeong Hwan Mun, Ian Bancroft, Feng Cheng, Sanwen Huang, Xixiang Li, Wei Hua, Junyi Wang, Xiyin Wang, Xiyin Wang, Xiyin Wang, Michael Freeling, J. Chris Pires, Andrew H. Paterson, Boulos Chalhoub, Bo Wang, Alice Hayward, Alice Hayward, Andrew G. Sharpe, Beom Seok Park, Bernd Weisshaar, Binghang Liu, Bo Li, Bo Liu, Chaobo Tong, Chi Song, Christopher Duran, Christopher Duran, Chunfang Peng, Chunyu Geng, Chushin Koh, Chuyu Lin, David Edwards, David Edwards, Desheng Mu, Di Shen, Eleni Soumpourou, Fei Li, Fiona Fraser, Gavin Conant, Gilles Lassalle, Graham J. King, Guusje Bonnema, Haibao Tang, Haiping Wang, Harry Belcram, Heling Zhou, Hideki Hirakawa, Hiroshi Abe, Hui Guo, Hui Wang, Huizhe Jin, Isobel A P Parkin, Jacqueline Batley, Jacqueline Batley, Jeong Sun Kim, Jérémy Just, Jianwen Li, Jiaohui Xu, Jie Deng, Jin A. Kim, Jingping Li, Jingyin Yu, Jinling Meng, Jinpeng Wang, Jinpeng Wang, Jiumeng Min, Julie Poulain, Katsunori Hatakeyama, Kui Wu, Li Wang, Li Wang, Lu Fang, Martin Trick, Matthew G. Links, Meixia Zhao, Mina Jin, Nirala Ramchiary, Nizar Drou, Paul J. Berkman, Paul J. Berkman, Qingle Cai, Quanfei Huang, Ruiqiang Li, Satoshi Tabata, Shifeng Cheng, Shu Zhang, Shujiang Zhang, Shunmou Huang, Shusei Sato, Silong Sun, Soo Jin Kwon
Nature Genetics   43 1035-1040   Oct 2011
We report the annotation and analysis of the draft genome sequence of Brassica rapa accession Chiifu-401-42, a Chinese cabbage. We modeled 41,174 protein coding genes in the B. rapa genome, which has undergone genome triplication. We used Arabidop...
S. B. Cannon, Shusei Sato, Satoshi Tabata, N. D. Young, G. D. May
Biology and Breeding of Food Legumes   348-361   Sep 2011
Kenta Shirasawa, Maki Oyama, Hideki Hirakawa, Shusei Sato, Satoshi Tabata, Takashi Fujioka, Chiaki Kimizuka-Takagi, Shigemi Sasamoto, Akiko Watanabe, Midori Kato, Yoshie Kishida, Mitsuyo Kohara, Chika Takahashi, Hisano Tsuruoka, Tsuyuko Wada, Takako Sakai, Sachiko Isobe
DNA Research   18 221-232   Aug 2011
Raphanus sativus (2n 2x 18) is a widely cultivated member of the family Brassicaceae, for which genomic resources are available only to a limited extent in comparison to many other members of the family. To promote more genetic and genomic studies...
Alejandro Tovar-Méndez, Alejandro Tovar-Méndez, Manuel A. Matamoros, Pilar Bustos-Sanmamed, Karl Josef Dietz, Francisco Javier Cejudo, Nicolas Rouhier, Shusei Sato, Satoshi Tabata, Manuel Becana
Plant Physiology   156 1535-1547   Jul 2011
Peroxiredoxins (Prxs), thioredoxins (Trxs), and NADPH-thioredoxin reductases (NTRs) constitute central elements of the thioldisulfide redox regulatory network of plant cells. This study provides a comprehensive survey of this network in the model ...
Naoganchaolu Borjigin, Keisuke Furukawa, Yoshikazu Shimoda, Satoshi Tabata, Shusei Sato, Shima Eda, Kiwamu Minamisawa, Hisayuki Mitsui
Microbes and Environments   26 165-171   Jun 2011
Signature-tagged mutagenesis was applied to Mesorhizobium loti, a nitrogen-fixing root-nodule symbiont of the leguminous plant Lotus japonicus. We arranged 1,887 non-redundant mutant strains of M. loti into 75 sets, each consisting of 24 to 26 str...
Mizue Anda, Seishi Ikeda, Seishi Ikeda, Shima Eda, Takashi Okubo, Shusei Sato, Satoshi Tabata, Hisayuki Mitsui, Kiwamu Minamisawa
Microbes and Environments   26 172-180   Jun 2011
The aims of this study were to isolate Aurantimonas and Methylobacterium strains that responded to soybean nodulation phenotypes and nitrogen fertilization rates in a previous culture-independent analysis (Ikeda et al. ISME J. 4:315-326, 2010). Tw...
Satoshi Watanabe, Zhengjun Xia, Zhengjun Xia, Rumiko Hideshima, Yasutaka Tsubokura, Shusei Sato, Naoki Yamanaka, Ryoji Takahashi, Toyoaki Anai, Satoshi Tabata, Keisuke Kitamura, Kyuya Harada
Genetics   188 395-407   Jun 2011
Flowering is indicative of the transition from vegetative to reproductive phase, a critical event in the life cycle of plants. In soybean (Glycine max), a flowering quantitative trait locus, FT2, corresponding to the maturity locus E2, was detecte...
Naoya Takeda, Naoya Takeda, Kristina Haage, Shusei Sato, Satoshi Tabata, Martin Parniske
Molecular Plant-Microbe Interactions   24 662-670   Jun 2011
The subtilisin-like serine protease SbtMl is strongly and specifically induced during arbuscular mycorrhiza (AM) symbiosis in Lotus japonicus. Another subtilase gene, SbtS, is induced during early stages of nodulation and AM. Transcript profiling ...
Seishi Ikeda, Seishi Ikeda, Mizue Anda, Shoko Inaba, Shima Eda, Shusei Sato, Kazuhiro Sasaki, Satoshi Tabata, Hisayuki Mitsui, Tadashi Sato, Takuro Shinano, Kiwamu Minamisawa
Applied and Environmental Microbiology   77 1973-1980   Mar 2011
The diversities leaf-associated bacteria on nonnodulated (Nod-), wild-type nodulated (Nod+), and hypernodulated (Nod++) soybeans were evaluated by clone library analyses of the 16S rRNA gene. To analyze the impact of nitrogen fertilization on the ...
Lene Krusell, Naoto Sato, Izumi Fukuhara, Bjã E V Koch, Christina Grossmann, Satoru Okamoto, Erika Oka-Kira, Yoko Otsubo, Grégoire Aubert, Tomomi Nakagawa, Shusei Sato, Satoshi Tabata, Gerard Duc, Martin Parniske, Trevor L. Wang, Masayoshi Kawaguchi, Jens Stougaard
Plant Journal   65 861-871   Mar 2011
The number of root nodules developing on legume roots after rhizobial infection is controlled by the plant shoot through autoregulation and mutational inactivation of this mechanism leads to hypernodulation. We have characterised the Pisum sativum...
Pilar Bustos-Sanmamed, Alejandro Tovar-Méndez, Martin Crespi, Shusei Sato, Satoshi Tabata, Manuel Becana
New Phytologist   189 765-776   Feb 2011
Summary: •In legumes, symbiotic leghemoglobins facilitate oxygen diffusion to the bacteroids, but the roles of nonsymbiotic and truncated hemoglobins are largely unknown. Here the five hemoglobin genes of Lotus japonicus have been functionally cha...
Shusei Sato, Hideki Hirakawa, Sachiko Isobe, Eigo Fukai, Akiko Watanabe, Midori Kato, Kumiko Kawashima, Chiharu Minami, Akiko Muraki, Naomi Nakazaki, Chika Takahashi, Shinobu Nakayama, Yoshie Kishida, Mitsuyo Kohara, Manabu Yamada, Hisano Tsuruoka, Shigemi Sasamoto, Satoshi Tabata, Tomoyuki Aizu, Atsushi Toyoda, Tadasu Shin-I, Yohei Minakuchi, Yuji Kohara, Asao Fujiyama, Asao Fujiyama, Suguru Tsuchimoto, Shinichiro Kajiyama, Eri Makigano, Nobuko Ohmido, Nakako Shibagaki, Joyce A. Cartagena, Naoki Wada, Tsutomu Kohinata, Alipour Atefeh, Shota Yuasa, Sachihiro Matsunaga, Kiichi Fukui
DNA Research   18 65-76   Feb 2011
The whole genome of Jatropha curcas was sequenced, using a combination of the conventional Sanger method and new-generation multiplex sequencing methods. Total length of the non-redundant sequences thus obtained was 285 858 490 bp consisting of 12...