Takeshi Kawashima

J-GLOBAL         Last updated: Dec 26, 2017 at 11:35
 
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Name
Takeshi Kawashima
Nickname
Takeshi Kawashima
Affiliation
National Institute of Genetics
Research funding number
10378531

Research Areas

 
 

Academic & Professional Experience

 
Mar 2017
 - 
Today
Assistant Professor, Center for Information Biology, National Institute of Genetics
 
Apr 2016
 - 
Feb 2017
Postdoctoral Researcher, Center for Information Biology, National Institute of Genetics
 
Apr 2015
 - 
Mar 2016
Research Associate, Faculty of Life and Environmental Sciences, University of Tsukuba
 
Apr 2014
 - 
Mar 2015
Staff Scientist III Group Leader, Marinegenomics Unit, Okinawa Institute of Science and Technology
 
Apr 2013
 - 
Mar 2015
Visiting Scholar, Division of Evolutionary Biology, NINS, National Institute of Basic Biology
 
Nov 2011
 - 
Mar 2014
Group Leader, Marinegenomics Unita, Okinawa Institute of Science and Technology
 
Apr 2010
 - 
Oct 2011
Group Leader, Marinegenomics Unit, Okinawa Institute of Science and Technology
 
Apr 2008
 - 
Mar 2010
Researcher, Marinegenomics Unit, Okinawa Institute of Science and Technology
 
Apr 2006
 - 
Mar 2008
JSPS Postdoctral Fellow, Visiting Scholar, Rokhsar Lab., DOE Joint Genome Institute, USA.
 
Dec 2003
 - 
Mar 2006
Instructor, Department of Zoology, Division of Biological Science, Graduate School of Science, Kyoto University
 
Apr 2001
 - 
Nov 2003
JSPS Postdoctoral Fellow, Institute for Chemical Research, Kyoto University
 

Published Papers

 
Simakov O, Kawashima T
Developmental biology   427(2) 179-192   Jul 2017   [Refereed]
Takeuchi T, Koyanagi R, Gyoja F, Kanda M, Hisata K, Fujie M, Goto H, Yamasaki S, Nagai K, Morino Y, Miyamoto H, Endo K, Endo H, Nagasawa H, Kinoshita S, Asakawa S, Watabe S, Satoh N, Kawashima T
Zoological letters   2 3   2016   [Refereed]
Sato A, Kawashima T, Fujie M, Hughes S, Satoh N, Shimeld SM
Scientific reports   5 16717   Nov 2015   [Refereed]
Simakov O, Kawashima T, Marlétaz F, Jenkins J, Koyanagi R, Mitros T, Hisata K, Bredeson J, Shoguchi E, Gyoja F, Yue JX, Chen YC, Freeman RM Jr, Sasaki A, Hikosaka-Katayama T, Sato A, Fujie M, Baughman KW, Levine J, Gonzalez P, Cameron C, Fritzenwanker JH, Pani AM, Goto H, Kanda M, Arakaki N, Yamasaki S, Qu J, Cree A, Ding Y, Dinh HH, Dugan S, Holder M, Jhangiani SN, Kovar CL, Lee SL, Lewis LR, Morton D, Nazareth LV, Okwuonu G, Santibanez J, Chen R, Richards S, Muzny DM, Gillis A, Peshkin L, Wu M, Humphreys T, Su YH, Putnam NH, Schmutz J, Fujiyama A, Yu JK, Tagawa K, Worley KC, Gibbs RA, Kirschner MW, Lowe CJ, Satoh N, Rokhsar DS, Gerhart J
Nature   527(7579) 459-465   Nov 2015   [Refereed]
Satoh N, Tagawa K, Lowe CJ, Yu JK, Kawashima T, Takahashi H, Ogasawara M, Kirschner M, Hisata K, Su YH, Gerhart J
Genesis (New York, N.Y. : 2000)   52(12) 925-934   Dec 2014   [Refereed]
Gusev O, Suetsugu Y, Cornette R, Kawashima T, Logacheva MD, Kondrashov AS, Penin AA, Hatanaka R, Kikuta S, Shimura S, Kanamori H, Katayose Y, Matsumoto T, Shagimardanova E, Alexeev D, Govorun V, Wisecaver J, Mikheyev A, Koyanagi R, Fujie M, Nishiyama T, Shigenobu S, Shibata TF, Golygina V, Hasebe M, Okuda T, Satoh N, Kikawada T
Nature communications   5 4784   Sep 2014   [Refereed]
Tagawa K, Arimoto A, Sasaki A, Izumi M, Fujita S, Humphreys T, Fujiyama A, Kagoshima H, Shin-I T, Kohara Y, Satoh N, Kawashima T
Zoological science   31(7) 414-420   Jul 2014   [Refereed]
Mungpakdee S, Shinzato C, Takeuchi T, Kawashima T, Koyanagi R, Hisata K, Tanaka M, Goto H, Fujie M, Lin S, Satoh N, Shoguchi E
Genome biology and evolution   6(6) 1408-1422   May 2014   [Refereed]
Kawashima T, Takeuchi T, Koyanagi R, Kinoshita S, Endo H, Endo K
Zoological science   30(10) 794-796   Oct 2013   [Refereed]
Koyanagi R, Takeuchi T, Hisata K, Gyoja F, Shoguchi E, Satoh N, Kawashima T
Zoological science   30(10) 797-800   Oct 2013   [Refereed]
Shoguchi E, Shinzato C, Kawashima T, Gyoja F, Mungpakdee S, Koyanagi R, Takeuchi T, Hisata K, Tanaka M, Fujiwara M, Hamada M, Seidi A, Fujie M, Usami T, Goto H, Yamasaki S, Arakaki N, Suzuki Y, Sugano S, Toyoda A, Kuroki Y, Fujiyama A, Medina M, Coffroth MA, Bhattacharya D, Satoh N
Current biology : CB   23(15) 1399-1408   Aug 2013   [Refereed]
Matsumae H, Hamada M, Fujie M, Niimura Y, Tanaka H, Kawashima T
Gene   519(1) 82-90   Apr 2013   [Refereed]
Shoguchi E, Tanaka M, Shinzato C, Kawashima T, Satoh N
Gene   515(2) 426-431   Feb 2013   [Refereed]
Hamada M, Shoguchi E, Shinzato C, Kawashima T, Miller DJ, Satoh N
Molecular biology and evolution   30(1) 167-176   Jan 2013   [Refereed]
Freeman R, Ikuta T, Wu M, Koyanagi R, Kawashima T, Tagawa K, Humphreys T, Fang GC, Fujiyama A, Saiga H, Lowe C, Worley K, Jenkins J, Schmutz J, Kirschner M, Rokhsar D, Satoh N, Gerhart J
Current biology : CB   22(21) 2053-2058   Nov 2012   [Refereed]
Shinzato C, Hamada M, Shoguchi E, Kawashima T, Satoh N
Zoological science   29(8) 510-517   Aug 2012   [Refereed]
Takeuchi T, Kawashima T, Koyanagi R, Gyoja F, Tanaka M, Ikuta T, Shoguchi E, Fujiwara M, Shinzato C, Hisata K, Fujie M, Usami T, Nagai K, Maeyama K, Okamoto K, Aoki H, Ishikawa T, Masaoka T, Fujiwara A, Endo K, Endo H, Nagasawa H, Kinoshita S, Asakawa S, Watabe S, Satoh N
DNA research : an international journal for rapid publication of reports on genes and genomes   19(2) 117-130   Apr 2012   [Refereed]
Gyoja F, Kawashima T, Satoh N
Development genes and evolution   222(2) 63-76   Apr 2012   [Refereed]
Katayama T, Wilkinson MD, Vos R, Kawashima T, Kawashima S, Nakao M, Yamamoto Y, Chun HW, Yamaguchi A, Kawano S, Aerts J, Aoki-Kinoshita KF, Arakawa K, Aranda B, Bonnal RJ, Fernández JM, Fujisawa T, Gordon PM, Goto N, Haider S, Harris T, Hatakeyama T, Ho I, Itoh M, Kasprzyk A, Kido N, Kim YJ, Kinjo AR, Konishi F, Kovarskaya Y, von Kuster G, Labarga A, Limviphuvadh V, McCarthy L, Nakamura Y, Nam Y, Nishida K, Nishimura K, Nishizawa T, Ogishima S, Oinn T, Okamoto S, Okuda S, Ono K, Oshita K, Park KJ, Putnam N, Senger M, Severin J, Shigemoto Y, Sugawara H, Taylor J, Trelles O, Yamasaki C, Yamashita R, Satoh N, Takagi T
Journal of biomedical semantics   2 4   Aug 2011   [Refereed]
Shinzato C, Shoguchi E, Kawashima T, Hamada M, Hisata K, Tanaka M, Fujie M, Fujiwara M, Koyanagi R, Ikuta T, Fujiyama A, Miller DJ, Satoh N
Nature   476(7360) 320-323   Jul 2011   [Refereed]
Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, Kapitonov V, Ovcharenko I, Putnam NH, Shu S, Taher L, Blitz IL, Blumberg B, Dichmann DS, Dubchak I, Amaya E, Detter JC, Fletcher R, Gerhard DS, Goodstein D, Graves T, Grigoriev IV, Grimwood J, Kawashima T, Lindquist E, Lucas SM, Mead PE, Mitros T, Ogino H, Ohta Y, Poliakov AV, Pollet N, Robert J, Salamov A, Sater AK, Schmutz J, Terry A, Vize PD, Warren WC, Wells D, Wills A, Wilson RK, Zimmerman LB, Zorn AM, Grainger R, Grammer T, Khokha MK, Richardson PM, Rokhsar DS
Science (New York, N.Y.)   328(5978) 633-636   Apr 2010   [Refereed]
Chapman JA, Kirkness EF, Simakov O, Hampson SE, Mitros T, Weinmaier T, Rattei T, Balasubramanian PG, Borman J, Busam D, Disbennett K, Pfannkoch C, Sumin N, Sutton GG, Viswanathan LD, Walenz B, Goodstein DM, Hellsten U, Kawashima T, Prochnik SE, Putnam NH, Shu S, Blumberg B, Dana CE, Gee L, Kibler DF, Law L, Lindgens D, Martinez DE, Peng J, Wigge PA, Bertulat B, Guder C, Nakamura Y, Ozbek S, Watanabe H, Khalturin K, Hemmrich G, Franke A, Augustin R, Fraune S, Hayakawa E, Hayakawa S, Hirose M, Hwang JS, Ikeo K, Nishimiya-Fujisawa C, Ogura A, Takahashi T, Steinmetz PR, Zhang X, Aufschnaiter R, Eder MK, Gorny AK, Salvenmoser W, Heimberg AM, Wheeler BM, Peterson KJ, Böttger A, Tischler P, Wolf A, Gojobori T, Remington KA, Strausberg RL, Venter JC, Technau U, Hobmayer B, Bosch TC, Holstein TW, Fujisawa T, Bode HR, David CN, Rokhsar DS, Steele RE
Nature   464(7288) 592-596   Mar 2010   [Refereed]
Kawashima T, Kawashima S, Tanaka C, Murai M, Yoneda M, Putnam NH, Rokhsar DS, Kanehisa M, Satoh N, Wada H
Genome research   19(8) 1393-1403   Aug 2009   [Refereed]
[Decoding of amphioxus genome and evolution of chordates].
Satoh N, Kawashima T, Shoguchi E
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme   54(1) 20-28   Jan 2009   [Refereed]
Holland LZ, Albalat R, Azumi K, Benito-Gutiérrez E, Blow MJ, Bronner-Fraser M, Brunet F, Butts T, Candiani S, Dishaw LJ, Ferrier DE, Garcia-Fernàndez J, Gibson-Brown JJ, Gissi C, Godzik A, Hallböök F, Hirose D, Hosomichi K, Ikuta T, Inoko H, Kasahara M, Kasamatsu J, Kawashima T, Kimura A, Kobayashi M, Kozmik Z, Kubokawa K, Laudet V, Litman GW, McHardy AC, Meulemans D, Nonaka M, Olinski RP, Pancer Z, Pennacchio LA, Pestarino M, Rast JP, Rigoutsos I, Robinson-Rechavi M, Roch G, Saiga H, Sasakura Y, Satake M, Satou Y, Schubert M, Sherwood N, Shiina T, Takatori N, Tello J, Vopalensky P, Wada S, Xu A, Ye Y, Yoshida K, Yoshizaki F, Yu JK, Zhang Q, Zmasek CM, de Jong PJ, Osoegawa K, Putnam NH, Rokhsar DS, Satoh N, Holland PW
Genome research   18(7) 1100-1111   Jul 2008   [Refereed]
Christiaen L, Davidson B, Kawashima T, Powell W, Nolla H, Vranizan K, Levine M
Science (New York, N.Y.)   320(5881) 1349-1352   Jun 2008   [Refereed]
Putnam NH, Butts T, Ferrier DE, Furlong RF, Hellsten U, Kawashima T, Robinson-Rechavi M, Shoguchi E, Terry A, Yu JK, Benito-Gutiérrez EL, Dubchak I, Garcia-Fernàndez J, Gibson-Brown JJ, Grigoriev IV, Horton AC, de Jong PJ, Jurka J, Kapitonov VV, Kohara Y, Kuroki Y, Lindquist E, Lucas S, Osoegawa K, Pennacchio LA, Salamov AA, Satou Y, Sauka-Spengler T, Schmutz J, Shin-I T, Toyoda A, Bronner-Fraser M, Fujiyama A, Holland LZ, Holland PW, Satoh N, Rokhsar DS
Nature   453(7198) 1064-1071   Jun 2008   [Refereed]
Azumi K, Sabau SV, Fujie M, Usami T, Koyanagi R, Kawashima T, Fujiwara S, Ogasawara M, Satake M, Nonaka M, Wang HG, Satou Y, Satoh N
Developmental biology   308(2) 572-582   Aug 2007   [Refereed]
Comparative pair-wise domain-combinations for screening the clade specific domain-architectures in metazoan genomes.
Kawashima S, Kawashima T, Putnam NH, Rokhsar DS, Wada H, Kanehisa M
Genome informatics. International Conference on Genome Informatics   19 50-60   2007   [Refereed]
Shoguchi E, Kawashima T, Satou Y, Hamaguchi M, Sin-I T, Kohara Y, Putnam N, Rokhsar DS, Satoh N
Genome research   16(2) 297-303   Feb 2006   [Refereed]
[Recent advances in developmental genomics of the ascidian Ciona intestinalis].
Kawashima T, Shoguchi E, Satou Y, Satoh N
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme   50(16 Suppl) 2153-2159   Dec 2005   [Refereed]
Satou Y, Kawashima T, Shoguchi E, Nakayama A, Satoh N
Zoological science   22(8) 837-843   Aug 2005   [Refereed]
Shoguchi E, Kawashima T, Nishida-Umehara C, Matsuda Y, Satoh N
Zoological science   22(5) 511-516   May 2005   [Refereed]
Kawashima T, Satou Y, Murakami SD, Satoh N
Development, growth & differentiation   47(3) 187-199   Apr 2005   [Refereed]
Satou Y, Kawashima T, Kohara Y, Satoh N
Development genes and evolution   213(5-6) 314-318   Jun 2003   [Refereed]
Kawashima T, Tokuoka M, Awazu S, Satoh N, Satou Y
Development genes and evolution   213(5-6) 284-290   Jun 2003   [Refereed]
Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM, Harafuji N, Hastings KE, Ho I, Hotta K, Huang W, Kawashima T, Lemaire P, Martinez D, Meinertzhagen IA, Necula S, Nonaka M, Putnam N, Rash S, Saiga H, Satake M, Terry A, Yamada L, Wang HG, Awazu S, Azumi K, Boore J, Branno M, Chin-Bow S, DeSantis R, Doyle S, Francino P, Keys DN, Haga S, Hayashi H, Hino K, Imai KS, Inaba K, Kano S, Kobayashi K, Kobayashi M, Lee BI, Makabe KW, Manohar C, Matassi G, Medina M, Mochizuki Y, Mount S, Morishita T, Miura S, Nakayama A, Nishizaka S, Nomoto H, Ohta F, Oishi K, Rigoutsos I, Sano M, Sasaki A, Sasakura Y, Shoguchi E, Shin-i T, Spagnuolo A, Stainier D, Suzuki MM, Tassy O, Takatori N, Tokuoka M, Yagi K, Yoshizaki F, Wada S, Zhang C, Hyatt PD, Larimer F, Detter C, Doggett N, Glavina T, Hawkins T, Richardson P, Lucas S, Kohara Y, Levine M, Satoh N, Rokhsar DS
Science (New York, N.Y.)   298(5601) 2157-2167   Dec 2002   [Refereed]
Satou Y, Yamada L, Mochizuki Y, Takatori N, Kawashima T, Sasaki A, Hamaguchi M, Awazu S, Yagi K, Sasakura Y, Nakayama A, Ishikawa H, Inaba K, Satoh N
Genesis (New York, N.Y. : 2000)   33(4) 153-154   Aug 2002   [Refereed]
Kawashima T, Murakami AR, Ogasawara M, Tanaka K, Isoda R, Sasakura Y, Nishikata T, Okano H, Makabe KW
Development genes and evolution   210(3) 162-165   Mar 2000   [Refereed]
MAGEST: MAboya gene expression patterns and sequence tags.
Kawashima T, Kawashima S, Kanehisa M, Nishida H, Makabe KW
Nucleic acids research   28(1) 133-135   Jan 2000   [Refereed]

Books etc

 
Comparative Genomics: Basic and Applied Research
Takeshi Kawashima, Eiichi Shoguchi, Yutaka Satou, Nori Satoh (Part:Contributor, Comparative Genomics of Invertebrates)
CRC Press   Dec 2007   

Conference Activities & Talks

 
Highlight Track: Independent evolution of genomic characters during major metazoan transitions
Takeshi Kawashima
Highlight Track   28 Sep 2017   Japanese Society for Bioinformatics
Think about the relationship between zoology and information science in the coming future
Takeshi Kawashima
To pioneer the boundary area between zoology and informatics   22 Sep 2017   
Development of a method for annotation of natural compound annotation using transcriptome data
Takeshi Kawashima
25 Aug 2017   The Society of Evolutionary Studies, Japan
Attempt of compound annotation by mutual comparison between gene expression data and mass analysis data
Takeshi Kawashima
NGS field 5th meeting   23 May 2017   NGS field
Reconsidering Evolutionary Study of Metabolic Pathways in Eukaryotes [Invited]
Takeshi Kawashima
GEM Simposium   28 Mar 2017   National Institute of Genetics

Research Grants & Projects

 
ROIS: Challenging Exploratory Research Projects for the Future (FS)" grant from ROIS
Project Year: Aug 2017 - Mar 2017    Investigator(s): Takeshi Kawashima

Social Contribution

 
[Lecturer, Planner, Organizing Member, Report writing]  Rinkai Hack  Rinkai Hackathon 2017  (Tateyama Marine Laboratory, Ochanomizu University)  12 Jun 2017 - 16 Jun 2017