Alexis Vandenbon

Profile Information

Affiliation: Kyoto University

ORCID ID: https://orcid.org/0000-0003-2180-5732
J-GLOBAL ID: 201601007061521273
researchmap Member ID: B000256399

Research Areas

Life sciences / Systems genomics /

Research History

Aug, 2017 - Present

Kyoto University
Oct, 2009 - Jul, 2017

Osaka University

Major Papers

Murine breast cancers disorganize the liver transcriptome in a zonated manner.

Alexis Vandenbon, Rin Mizuno, Riyo Konishi, Masaya Onishi, Kyoko Masuda, Yuka Kobayashi, Hiroshi Kawamoto, Ayako Suzuki, Chenfeng He, Yuki Nakamura …

Communications biology, 6(1) 97-97, Jan 24, 2023 Peer-reviewed
A clustering-independent method for finding differentially expressed genes in single-cell transcriptome data.

Alexis Vandenbon, Diego Diez

Nature communications, 11(1) 4318-4318, Aug 28, 2020 Peer-reviewed
Waves of chromatin modifications in mouse dendritic cells in response to LPS stimulation.

Alexis Vandenbon, Yutaro Kumagai, Mengjie Lin, Yutaka Suzuki, Kenta Nakai

Genome biology, 19(1) 138-138, Sep 19, 2018 Peer-reviewed
Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system

Alexis Vandenbon, Viet H. Dinh, Norihisa Mikami, Yohko Kitagawa, Shunsuke Teraguchi, Naganari Ohkura, Shimon Sakaguchi

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 113(17) E2393-E2402, Apr, 2016 Peer-reviewed

Misc.

A rare subset of skin-tropic regulatory T cells expressing Il10/Gzmb inhibits the cutaneous immune response

Michio Tomura, Ryoyo Ikebuchi, Shunsuke Teraguchi, Alexis Vandenbon, Shand H. W. Francis, Tetsuya Honda

JOURNAL OF IMMUNOLOGY, 198(1), May, 2017

Books and Other Publications

Epigenetics in organ specific disorders

Boosani, Chandra, Goswami, Ritobrata (Role: Joint author, Chapter 2 - Higher-order chromatin structure and gene regulation)

Academic Press, 2023 (ISBN: 9780128239315)

Presentations

Exploratory analysis of various single-cell and spatial transcriptomics data types

Alexis Vandenbon

Institute for Quantitative Biosciences student seminar, the University of Tokyo, Sep 29, 2022 Invited
singleCellHaystack: A clustering-independent method for finding differentially expressed genes in single-cell transcriptome data

Alexis Vandenbon

Tsukuba Bioinformatics Assembly, Oct 21, 2021 Invited
singleCellHaystack: A clustering-independent method for predicting differentially expressed genes in single cell transcriptome data

Alexis Vandenbon

1st International Symposium of CCII -Bioinformatics and its application to cancer and other diseases, Jan 15, 2021
singleCellHaystack: A clustering-independent method for predicting differentially expressed genes in single cell transcriptome data

Alexis Vandenbon

Human Cell Atlas Asia Meeting 2020, Oct 22, 2020
Prediction of regulatory mechanisms of gene expression at the epigenetic, transcriptional and post-transcriptional level

Alexis Vandenbon

IIBMP2019, Sep 10, 2019 Invited
singleCellHaystack, A clustering-independent method for predicting differentially expressed genes in single cell transcriptome data

Alexis Vandenbon

IIBMP2019, Sep 10, 2019
Navigating gene co-expression data in the immune system and finding interesting genes in single-cell haystacks

Alexis Vandenbon

Mar 8, 2019 Invited
Reconstructing biological networks using large-scale gene expression data

Alexis Vandenbon

Biological Information Symposium, Feb 21, 2017
Waves of chromatin remodeling in mouse dendritic cells in response to lipopolysaccharide stimulation

Alexis Vandenbon

The 54th Annual Meeting of the Biophysical Society of Japan, Nov 24, 2016 Invited
Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system

Alexis Vandenbon

IIBMP2016, Sep 30, 2016
Analysing cell type-specific gene networks using Immuno-Navigator

Alexis Vandenbon

InCoB2016, Sep 21, 2016
Dynamics of enhancers in myeloid antigen presenting cells upon LPS stimulation

Alexis Vandenbon

GIW ISCB-ASIA 2014, Dec 17, 2014
A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription

Alexis Vandenbon

InCoB2012, Oct 5, 2012
Modeling the structures of promoters of virus-induced genes

Alexis Vandenbon

Bioinformatics in Immunology workshop, Nov 6, 2009
Towards a More Complex Grammar for Promoter Architecture Models

Alexis Vandenbon

JSBi 2008, Dec 16, 2008
Using Simple Rules on Presence and Positioning of Motifs for Promoter Structure Modeling and Tissue-specific Expression Prediction

Alexis Vandenbon

GIW 2008, Dec 3, 2008
Markov Chain-based Promoter Structure Modeling

Alexis Vandenbon

ISMB/ECCB 2007, Jul 25, 2007

Profile Information

Research Areas

Research History

Major Papers

Misc.

Books and Other Publications

Presentations

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Coauthors