Masanori Arita

J-GLOBAL         Last updated: Sep 30, 2019 at 16:39
Masanori Arita
National Institute of Genetics
Center for Information Biology
Job title
Ph. D.
Research funding number

Research Areas


Academic & Professional Experience

Nov 2013
Professor, National Institute of Genetics
Apr 2010
Oct 2013
Department of Biophysics and Biochemistry, Graduate School of Science, The University of Tokyo
Apr 2003
Mar 2010
Associate Professor, Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo
Apr 2001
Mar 2003
Researcher, AIST Computational Biology Research Center
Apr 1999
Mar 2001
Researcher, AIST Electrotechnical Laboratory

Published Papers

Tsugawa H, Nakabayashi R, Mori T, Yamada Y, Takahashi M, Rai A, Sugiyama R, Yamamoto H, Nakaya T, Yamazaki M, Kooke R, Bac-Molenaar JA, Oztolan-Erol N, Keurentjes JJB, Arita M, Saito K
Nature methods   16(4) 295-298   Apr 2019   [Refereed]
Endo A, Tanizawa Y, Arita M
Methods in molecular biology (Clifton, N.J.)   1887 3-13   2019   [Refereed]
Tanizawa Y, Fujisawa T, Arita M, Nakamura Y
Methods in molecular biology (Clifton, N.J.)   1962 215-226   2019   [Refereed]
Itoh H, Matsui M, Miyamura Y, Takeda I, Ishii J, Kumagai T, Machida M, Shibata T, Arita M
ACS synthetic biology      Nov 2018   [Refereed]
Endo A, Maeno S, Tanizawa Y, Kneifel W, Arita M, Dicks L, Salminen S
Applied and environmental microbiology   84(19)    Oct 2018   [Refereed]
Burla B, Arita M, Arita M, Bendt AK, Cazenave-Gassiot A, Dennis EA, Ekroos K, Han X, Ikeda K, Liebisch G, Lin MK, Loh TP, Meikle PJ, Orešič M, Quehenberger O, Shevchenko A, Torta F, Wakelam MJO, Wheelock CE, Wenk MR
Journal of lipid research   59(10) 2001-2017   Oct 2018   [Refereed]
Tanizawa Y, Tada I, Kobayashi H, Endo A, Maeno S, Toyoda A, Arita M, Nakamura Y, Sakamoto M, Ohkuma M, Tohno M
International journal of systematic and evolutionary microbiology      Sep 2018   [Refereed]
Satti M, Tanizawa Y, Endo A, Arita M
Journal of bioinformatics and computational biology   16(3) 1840012   Jun 2018   [Refereed]
Itoh H, Miura A, Matsui M, Arazoe T, Nishida K, Kumagai T, Arita M, Tamano K, Machida M, Shibata T
Applied microbiology and biotechnology   102(3) 1393-1405   Feb 2018   [Refereed]
Tanaka W, Arita M
Mass spectrometry (Tokyo, Japan)   7(1) A0066   2018   [Refereed]
Lai Z, Tsugawa H, Wohlgemuth G, Mehta S, Mueller M, Zheng Y, Ogiwara A, Meissen J, Showalter M, Takeuchi K, Kind T, Beal P, Arita M, Fiehn O
Nature methods   15 53-56   Jan 2018   [Refereed]
Tohno M, Tanizawa Y, Irisawa T, Masuda T, Sakamoto M, Arita M, Ohkuma M, Kobayashi H
International journal of systematic and evolutionary microbiology   67(9) 3639-3644   Sep 2017   [Refereed]
Itoh H, Matsui M, Kumagai T, Arita M, Machida M, Shibata T
Genome announcements   5(14)    Apr 2017
Kind T, Tsugawa H, Cajka T, Ma Y, Lai Z, Mehta SS, Wohlgemuth G, Barupal DK, Showalter MR, Arita M, Fiehn O
Mass spectrometry reviews      Apr 2017   [Refereed]
Tada I, Tanizawa Y, Arita M
BMC genomics   18(Suppl 2) 208   Mar 2017   [Refereed]
Tanizawa Y, Kobayashi H, Kaminuma E, Sakamoto M, Ohkuma M, Nakamura Y, Arita M, Tohno M
Bioscience of microbiota, food and health   36(3) 129-134   2017   [Refereed]
Tada I, Tanizawa Y, Endo A, Tohno M, Arita M
Bioscience of microbiota, food and health   36(4) 155-159   2017   [Refereed]
Tsugawa H, Ikeda K, Tanaka W, Senoo Y, Arita M, Arita M
Journal of cheminformatics   9 19   2017   [Refereed]
Maeno S, Tanizawa Y, Kanesaki Y, Kubota E, Kumar H, Dicks L, Salminen S, Nakagawa J, Arita M, Endo A
Systematic and applied microbiology   39(8) 516-526   Dec 2016   [Refereed]
Tada I, Saitoh S, Aoyama H, Shinzato N, Yamamoto N, Arita M, Ikematsu S
Genome announcements   5(5)    Feb 2017


矢作 忠弘, 石内 勘一郎, 渥美 聡孝, 三宅 克典, 森永 紀, 伏見 裕利, 大山 雅義, 森川 敏生, 田中 謙, 有田 正規, 牧野 利明
生薬学雑誌   71(1) 20-36   Feb 2017
矢作 忠弘, 石内 勘一郎, 渥美 聡孝, 三宅 克典, 森永 紀, 伏見 裕利, 大山 雅義, 森川 敏生, 田中 謙, 有田 正規, 牧野 利明
生薬学雑誌   71(1) 1-19   Feb 2017
Carroll AJ, Salek RM, Arita M, Kopka J, Walther D
Frontiers in bioengineering and biotechnology   4 63   Jul 2016
ARITA Masanori
Journal of Information Processing and Management   58(10) 755-762   2016
Elementary and secondary education in Japan will soon introduce digital textbooks. Before installation, it is sensible to learn from the scholarly communication area that suffers from the cost of digitization, without effective countermeasures or ...
有田 正規
情報管理   59(6) 377-383   Sep 2016
ARITA Masanori
Journal of Information Processing and Management   58(5) 353-360   2015
Major developed countries promote openness of, and increase access to scientific research data. Its major causes include the closedness of expensive academic journals from commercial publishers and the difficulty of replication studies due to larg...
ARITA Masanori
Journal of Information Processing and Management   57(10) 755-758   2015
ARITA Masanori
Journal of Information Processing and Management   58(7) E1-E1   2015
The correction is only for Japanese text.
Ohta Erika, Tsugawa Hiroshi, Izumi Yoshihiro, Kanazawa Mitsuhiro, Ogiwara Atsushi, Bamba Takeshi, Arita Masanori, Fukusaki Eiichiro
日本生物工学会大会講演要旨集   66    Aug 2014
有田 正規
情報管理   57(2) 125-128   May 2014
ARITA Masanori
Journal of Information Processing and Management   57(2) 125-128   2014
有田 正規
科学   83(11) 1277-1279   Nov 2013
ARITA Masanori
Journal of Information Processing and Management   57(6) 413-416   2014
ARITA Masanori
日本醸造協会誌 = Journal of the Brewing Society of Japan   108(2) 98-103   Feb 2013
ARITA Masanori
Journal of Information Processing and Management   55(11) 855-857   2013
ARITA Masanori
日本生物工学会大会講演要旨集   64(0)    Oct 2012
Tanaka Kenichi, Shinbo Yoko, Altaf-Ul-Amin Md., Asahi Hiroko, Kurokawa Ken, Hirai Aki, Arita Masanori, Ohta Daisaku, Kanaya Shigehiko
Symposium on Chemical Information and Computer Sciences   2007(0) JP32-JP32   2007
Secondary metabolites are highly species-specific and play a role for the survival of the producing organism within its natural habitat. Systematization of secondary metabolic pathway is necessary to understand species-specific metabolic pathway a...
Tuji Hisashi, Altaf-Ul-Amin Md., Arita Masanori, Nishio Hirokazu, Shinbo Yoko, Kurokawa Ken, Kanaya Shigehiko
Information and Media Technologies   2(1) 98-108   2007
A Protein-Protein Interaction network, what we call a PPI network is considered as an important source of information for prediction of protein functions. However, it is quite difficult to analyze such networks for their complexity. We expected th...
KOBAYASHI Tetsuya J., ARITA Masanori, MORISHITA Yoshihiro, AIHARA Kazuyuki
Systems, control and information   50(8) 290-296   Aug 2006

Conference Activities & Talks

Open genome analysis in the post-genomic era
Masanori Arita
International Workshop on Data Science   15 Nov 2018   
Computational Metabolomics
Masanori Arita
6th Annual Korea Metabolomics Society   6 Apr 2018   
Distribution of Glycosphingolipids Revealed by LipidBank
Masanori Arita
International Life Science Integration Workshop   5 Mar 2018   

Research Grants & Projects

Ministry of Education, Culture, Sports, Science and Technology: Grants-in-Aid for Scientific Research(特定領域研究)
Project Year: 2005 - 2010    Investigator(s): Masanori ARITA
A portal site was created to host chemical information on basic metabolites, lipid, plant secondary metabolites (flavonoids), scientific classification of plant species, and crude drug and Kampo information. The site functions as an integrative po...
Ministry of Education, Culture, Sports, Science and Technology: Grants-in-Aid for Scientific Research(基盤研究(B))
Project Year: 2004 - 2007    Investigator(s): Mami YAMAZAKI
In this study, the networks of gene expression and metabolism in plant were investigated by the comparative genetics between a model plant, and medicinal and/or crop plants. The chemotypes, transgenic mutants or cultured tissues that differ in sec...
Ministry of Education, Culture, Sports, Science and Technology: Grants-in-Aid for Scientific Research(基盤研究(A))
Project Year: 2003 - 2006    Investigator(s): Kazuki SAITO
Integrated analysis of omics can provide the clues for identification of gene function and precise information about gene-to-metabolite and/or metabolite-to-metabolite networks. We ran the functional genomics project combining metabolome and trans...