ASAI Kiyoshi

J-GLOBAL         Last updated: Nov 5, 2019 at 17:27
 
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Name
ASAI Kiyoshi
URL
http://www.ncrna.org
Affiliation
The University of Tokyo
Section
Graduate School of Frontier Science
Job title
Professor
Other affiliation
National Institute of Advanced Industrial Science and Technology

Research Areas

 
 

Published Papers

 
A robust model for quantitative prediction of the silencing efficacy of wild-type and A-to-I edited miRNAs
Shen Tian, Goro Terai, Yoshiaki Kobayashi, Yasuaki Kimura, Hiroshi Abe, Kiyoshi Asai, Kumiko Ui-Tei
RNA Biology (accepted)      Oct 2019   [Refereed]
Shrestha AMS, Yoshikawa N, Asai K
Bioinformatics (Oxford, England)   34(21) 3631-3637   Nov 2018   [Refereed]
Nishida S, Sakuraba S, Asai K, Hamada M
IEEE/ACM transactions on computational biology and bioinformatics      Mar 2018   [Refereed]
Hagio T, Sakuraba S, Iwakiri J, Mori R, Asai K
BMC bioinformatics   19(Suppl 1) 38   Feb 2018   [Refereed]
Shrestha AMS, Frith MC, Asai K, Richard H
Nucleic acids research   46(3) e18   Feb 2018   [Refereed]
Terai G, Kamegai S, Taneda A, Asai K
Bioinformatics (Oxford, England)   33(11) 1613-1620   Jun 2017   [Refereed]
Hamada M, Ono Y, Asai K, Frith MC
Bioinformatics (Oxford, England)   33(6) 926-928   Mar 2017   [Refereed]
Yamada O, Machida M, Hosoyama A, Goto M, Takahashi T, Futagami T, Yamagata Y, Takeuchi M, Kobayashi T, Koike H, Abe K, Asai K, Arita M, Fujita N, Fukuda K, Higa KI, Horikawa H, Ishikawa T, Jinno K, Kato Y, Kirimura K, Mizutani O, Nakasone K, Sano M, Shiraishi Y, Tsukahara M, Gomi K
DNA research : an international journal for rapid publication of reports on genes and genomes   23(6) 507-515   Dec 2016   [Refereed]
Iwakiri J, Hamada M, Asai K, Kameda T
Journal of chemical theory and computation   12(9) 4688-4697   Sep 2016   [Refereed]
Michiaki Hamada, Yukiteru Ono, Hisanori Kiryu, Kengo Sato, Yuki Kato, Tsukasa Fukunaga, Ryota Mori, Kiyoshi Asai
Nucleic Acids Research   44(W1) W302-7   Jul 2016   [Refereed]
Toshitaka Kumagai, Tomoko Ishii, Goro Terai, Myco Umemura, Masayuki Machida, Kiyoshi Asai
Genome Announcement   4(3) e00306-16   May 2016   [Refereed]
Terai G, Iwakiri J, Kameda T, Hamada M, Asai K
BMC genomics   17 Suppl 1 12   Jan 2016   [Refereed]
Nagano N, Umemura M, Izumikawa M, Kawano J, Ishii T, Kikuchi M, Tomii K, Kumagai T, Yoshimi A, Machida M, Abe K, Shin-Ya K, Asai K
Fungal genetics and biology : FG & B   86 58-70   Jan 2016   [Refereed]
Iwakiri J, Hamada M, Asai K
Biochimica et biophysica acta   1859(1) 23-30   Jan 2016   [Refereed]
Sakuraba S, Asai K, Kameda T
The journal of physical chemistry letters   6(21) 4348-4351   Nov 2015   [Refereed]
Terai G, Kamegai S, Asai K
Bioinformatics (Oxford, England)   32(6) 828-834   Nov 2015   [Refereed]
Hamada M, Ono Y, Fujimaki R, Asai K
Bioinformatics (Oxford, England)   31(15) 2426-2433   Aug 2015   [Refereed]
Yonemoto H, Asai K, Hamada M
Computational biology and chemistry   57 72-79   Aug 2015   [Refereed]
Tsukui T, Nagano N, Umemura M, Kumagai T, Terai G, Machida M, Asai K
Bioinformatics (Oxford, England)   31(7) 981-985   Apr 2015   [Refereed]
Shimizu K, Nuida K, Arai H, Mitsunari S, Attrapadung N, Hamada M, Tsuda K, Hirokawa T, Sakuma J, Hanaoka G, Asai K
BMC bioinformatics   16 Suppl 18 S6   2015   [Refereed]
Ikegami T, Inatsugi T, Kojima I, Umemura M, Hagiwara H, Machida M, Asai K
PloS one   10(4) e0126289   2015   [Refereed]
Wijaya E, Shimizu K, Asai K, Hamada M
Bioinformatics (Oxford, England)   30(18) 2559-2567   Sep 2014   [Refereed]
Takeda I, Umemura M, Koike H, Asai K, Machida M
DNA research : an international journal for rapid publication of reports on genes and genomes   21(4) 447-457   Aug 2014   [Refereed]
Yamasaki S, Hirokawa T, Asai K, Fukui K
Journal of chemical information and modeling   54(2) 672-682   Feb 2014   [Refereed]
Fukunaga T, Ozaki H, Terai G, Asai K, Iwasaki W, Kiryu H
Genome biology   15(1) R16   Jan 2014   [Refereed]
Mori R, Hamada M, Asai K
BMC genomics   15 Suppl 10 S6   2014   [Refereed]
Asai K, Hamada M
Methods in molecular biology (Clifton, N.J.)   1097 291-301   2014   [Refereed]
Iwakiri J, Kameda T, Asai K, Hamada M
Bioinformatics (Oxford, England)   29(20) 2524-2528   Oct 2013   [Refereed]
Yonemoto H, Asai K, Hamada M
International journal of molecular sciences   14(3) 6144-6156   Mar 2013   [Refereed]
Katayama T, Wilkinson MD, Micklem G, Kawashima S, Yamaguchi A, Nakao M, Yamamoto Y, Okamoto S, Oouchida K, Chun HW, Aerts J, Afzal H, Antezana E, Arakawa K, Aranda B, Belleau F, Bolleman J, Bonnal RJ, Chapman B, Cock PJ, Eriksson T, Gordon PM, Goto N, Hayashi K, Horn H, Ishiwata R, Kaminuma E, Kasprzyk A, Kawaji H, Kido N, Kim YJ, Kinjo AR, Konishi F, Kwon KH, Labarga A, Lamprecht AL, Lin Y, Lindenbaum P, McCarthy L, Morita H, Murakami K, Nagao K, Nishida K, Nishimura K, Nishizawa T, Ogishima S, Ono K, Oshita K, Park KJ, Prins P, Saito TL, Samwald M, Satagopam VP, Shigemoto Y, Smith R, Splendiani A, Sugawara H, Taylor J, Vos RA, Withers D, Yamasaki C, Zmasek CM, Kawamoto S, Okubo K, Asai K, Takagi T
Journal of biomedical semantics   4(1) 6   Feb 2013   [Refereed]
Yukiteru Ono, Kiyoshi Asai, Michiaki Hamada
Bioinformatics   29(1) 119-121   Jan 2013   [Refereed]
Umemura M, Koike H, Nagano N, Ishii T, Kawano J, Yamane N, Kozone I, Horimoto K, Shin-ya K, Asai K, Yu J, Bennett JW, Machida M
PloS one   8(12) e84028   2013   [Refereed]
Wijaya E, Frith MC, Horton P, Asai K
PloS one   8(1) e54210   2013   [Refereed]
Kengo Sato, Yuki Kato, Tatsuya Akutsu, Kiyoshi Asai, Yasubumi Sakakibara
Bioinformatics   28(24) 3218-3224   Dec 2012   [Refereed]
Goro Terai, Hiroaki Okida, Kiyoshi Asai, Toutai Mituyama
PLoS One   7(9) e44314   Sep 2012   [Refereed]
Hiroki Ashida, Kiyoshi Asai, Michiaki Hamada
Nucleic Acids Research   40(14) 6435-6448   Aug 2012   [Refereed]
Yuki Kato, Kengo Sato, Kiyoshi Asai, Tatsuya Akutsu
Nucleic Acids Research   40(Web server issue) W29-W34   Jul 2012   [Refereed]
Michiaki Hamada, Kiyoshi Asai
Journal of Computational Biology   19(5) 532-549   May 2012   [Refereed]
Hisanori Kiryu, Kiyoshi Asai
Bioinformatics   28(8) 1093-1101   Apr 2012   [Refereed]
Raymond Wan, Vo Ngoc Anh, Kiyoshi Asai
Bioinformatics   28(5) 628-635   Mar 2012   [Refereed]
Martin C Frith, Ryota Mori, Kiyoshi Asai
Nucleic Acids Research   40(13) e100   Mar 2012   [Refereed]
Wijaya E, Frith MC, Asai K, Horton P
Nucleic acids research   40(Database issue) D1089-D1092   Jan 2012   [Refereed]
Hamada M, Wijaya E, Frith MC, Asai K
Bioinformatics (Oxford, England)   27(22) 3085-3092   Nov 2011   [Refereed]
Sato K, Kato Y, Hamada M, Akutsu T, Asai K
Bioinformatics (Oxford, England)   27(13) i85-93   Jul 2011   [Refereed]
Hamada M, Yamada K, Sato K, Frith MC, Asai K
Nucleic acids research   39(Web Server issue) W100-6   Jul 2011   [Refereed]
Kiryu H, Terai G, Imamura O, Yoneyama H, Suzuki K, Asai K
Bioinformatics (Oxford, England)   27(13) 1788-1797   Jul 2011   [Refereed]
Adachi H, Ishiguro A, Hamada M, Sakota E, Asai K, Nakamura Y
Biochimie   93(7) 1081-1088   Jul 2011   [Refereed]
Hamada M, Kiryu H, Iwasaki W, Asai K
PloS one   6(2) e16450   Feb 2011   [Refereed]
Hamada M, Sato K, Asai K
Nucleic acids research   39(2) 393-402   Jan 2011   [Refereed]
Hamada M, Sato K, Asai K
BMC bioinformatics   11 586   Nov 2010   [Refereed]
Kato Y, Sato K, Hamada M, Watanabe Y, Asai K, Akutsu T
Bioinformatics (Oxford, England)   26(18) i460-i466-6   Sep 2010   [Refereed]
Katayama T, Arakawa K, Nakao M, Ono K, Aoki-Kinoshita KF, Yamamoto Y, Yamaguchi A, Kawashima S, Chun HW, Aerts J, Aranda B, Barboza LH, Bonnal RJ, Bruskiewich R, Bryne JC, Fernández JM, Funahashi A, Gordon PM, Goto N, Groscurth A, Gutteridge A, Holland R, Kano Y, Kawas EA, Kerhornou A, Kibukawa E, Kinjo AR, Kuhn M, Lapp H, Lehvaslaiho H, Nakamura H, Nakamura Y, Nishizawa T, Nobata C, Noguchi T, Oinn TM, Okamoto S, Owen S, Pafilis E, Pocock M, Prins P, Ranzinger R, Reisinger F, Salwinski L, Schreiber M, Senger M, Shigemoto Y, Standley DM, Sugawara H, Tashiro T, Trelles O, Vos RA, Wilkinson MD, York W, Zmasek CM, Asai K, Takagi T
Journal of biomedical semantics   1(8) 8   Aug 2010   [Refereed]
Terai G, Yoshizawa A, Okida H, Asai K, Mituyama T
Nucleic acids research   38(4) 1163-1171   Mar 2010   [Refereed]
Tsuyoshi Kato, Hisashi Kashima, Masashi Sugiyama, Kiyoshi Asai
IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING   22(7) 957-968   2010   [Refereed]
Hamada M, Sato K, Kiryu H, Mituyama T, Asai K
Bioinformatics (Oxford, England)   25(24) 3236-3243   Dec 2009   [Refereed]
Kuniaki Saito, Sachi Inagaki, Toutai Mituyama, Yoshinori Kawamura, Yukiteru Ono, Eri Sakota, Hazuki Kotani, Kiyoshi Asai, Haruhiko Siomi, Mikiko C Siomi
Nature   461(7268) 1296-1299   Oct 2009   [Refereed]
Kunio Kikuchi, Makiha Fukuda, Tomoya Ito, Mitsuko Inoue, Takahide Yokoi, Suenori Chiku, Toutai Mitsuyama, Kiyoshi Asai, Tetsuro Hirose, Yasunori Aizawa
Nucleic Acids Research   37(15) 4987-5000   Aug 2009   [Refereed]
Kengo Sato, Michiaki Hamada, Kiyoshi Asai, Toutai Mituyama
Nucleic acids research   37(Web Server issue) W277-W280   Jul 2009   [Refereed]
Michiaki Hamada, Kengo Sato, Hisanori Kiryu, Toutai Mituyama, Kiyoshi Asai
Bioinformatics   25(12) i330-i338   Jun 2009   [Refereed]
Yasuo Tabei, Kiyoshi Asai
Bioinformatics   25(12) 1498-1505   Jun 2009   [Refereed]
Michiaki Hamada, Hisanori Kiryu, Kengo Sato, Toutai Mituyama, Kiyoshi Asai
Bioinformatics   25(4) 465-473   Feb 2009   [Refereed]
Toutai Mituyama, Kouichirou Yamada, Emi Hattori, Hiroaki Okida, Yukiteru Ono, Goro Terai, Aya Yoshizawa, Takashi Komori, and Kiyoshi Asai
Nucleic Acids Research   37(Database issue) D89-D92   Jan 2009   [Refereed]
Michiaki Hamada, Toutai Mituyama, Kiyoshi Asai
IPSJ Transactions on Bioinformatics   2 36-46   2009   [Refereed]
Software.ncrna.org: web servers for analyses of RNA sequences
Nucleic Acids Research   36(Web Server issue) W75-W78   Jul 2008   [Refereed]
Kengo Sato, Toutai Mituyama, Kiyoshi Asai, Yasubumi Sakakibara
BMC Bioinformatics   9(318) 318   Jul 2008   [Refereed]
Yoshinori Kawamura, Kuniaki Saito, Taishin Kin, Yukiteru Ono, Kiyoshi Asai, Takafumi Sunohara, Tomoko N. Okada, Mikiko C. Siomi and Haruhiko Siomi
Nature   453(7196) 793-797   Jun 2008   [Refereed]
Kiyna Okada and Kiyoshi Asai
BMC Genomics   9(218)    May 2008   [Refereed]
Okada K, Asai K
BMC genomics   9 218   May 2008   [Refereed]
Kinya Okada and Kiyoshi Asai
Gene   412(1-2) 71-83   Apr 2008   [Refereed]
Hisanori Kiryu, Taishin Kin, Kiyoshi Asai
Bioinformatics   24(3) 367-373   Feb 2008   [Refereed]
Asuka Azuma-Mukai, Hideo Oguri, Toutai Mituyama, Zhi Rong Qian, Kiyoshi Asai, Haruhiko Siomi, and Mikiko C. Siomi
Proceedings of the National Academy of Science of the USA   105(23) 7964-7969   Jan 2008   [Refereed]
Yasuo Tabei, Hisanori Kiryu, Taishin Kin, Kiyoshi Asai
BMC Bioinformatics   9(33) 33   Jan 2008   [Refereed]
Terai G, Komori T, Asai K, Kin T
RNA (New York, N.Y.)   13(12) 2081-2090   Dec 2007   [Refereed]
Stem kernels for RNA sequence analyses.
Sakakibara Y, Popendorf K, Ogawa N, Asai K, Sato K
Journal of bioinformatics and computational biology   5(5) 1103-1122   Oct 2007   [Refereed]
Hisanori Kiryu, Yasuo Tabei, Taishin Kin, and Kiyoshi Asai
Bioinformatics   23(13) 1588-1598   Jul 2007   [Refereed]
Sasaki YT, Sano M, Ideue T, Kin T, Asai K, Hirose T
Biochemical and biophysical research communications   357(4) 991-996   Jun 2007   [Refereed]
Sasaki YT, Sano M, Kin T, Asai K, Hirose T
Biochemical and biophysical research communications   357(3) 724-730   Jun 2007   [Refereed]
Kobayashi T, Abe K, Asai K, Gomi K, Juvvadi PR, Kato M, Kitamoto K, Takeuchi M, Machida M
Bioscience, biotechnology, and biochemistry   71(3) 646-670   Mar 2007   [Refereed]
Hisanori Kiryu, Taishin Kin, and Kiyoshi Asai
Bioinformatics   23(4) 434-441   Feb 2007   [Refereed]
Taishin Kin, Kouichirou Yamada, Goro Terai, Hiroaki Okida, Yasuhiko Yoshinari, Yukiteru Ono, Aya Kojima, Yuki Kimura, Takashi Komori, and Kiyoshi Asai
Nucleic Acids Research   35(Database issue) D145-D148   Jan 2007   [Refereed]
Michiaki Hamada, Koji Tsuda, Taku Kudo, Taishin Kin, and Kiyoshi Asai
Bioinformatics   22(20) 2480-2487   Oct 2006   [Refereed]
Yasuo Tabei, Koji Tsuda, Taishin Kin, and Kiyoshi Asai
Bioinformatics   22(24) 1723-1729   Jul 2006   [Refereed]
Kato T, Murata Y, Miura K, Asai K, Horton PB, Koji T, Fujibuchi W
BMC bioinformatics   7 Suppl 1 S4   Mar 2006   [Refereed]
Machida M, Asai K, Sano M, Tanaka T, Kumagai T, Terai G, Kusumoto K, Arima T, Akita O, Kashiwagi Y, Abe K, Gomi K, Horiuchi H, Kitamoto K, Kobayashi T, Takeuchi M, Denning DW, Galagan JE, Nierman WC, Yu J, Archer DB, Bennett JW, Bhatnagar D, Cleveland TE, Fedorova ND, Gotoh O, Horikawa H, Hosoyama A, Ichinomiya M, Igarashi R, Iwashita K, Juvvadi PR, Kato M, Kato Y, Kin T, Kokubun A, Maeda H, Maeyama N, Maruyama J, Nagasaki H, Nakajima T, Oda K, Okada K, Paulsen I, Sakamoto K, Sawano T, Takahashi M, Takase K, Terabayashi Y, Wortman JR, Yamada O, Yamagata Y, Anazawa H, Hata Y, Koide Y, Komori T, Koyama Y, Minetoki T, Suharnan S, Tanaka A, Isono K, Kuhara S, Ogasawara N, Kikuchi H.
Nature   438(7071) 1157-1161   Dec 2005   [Refereed]
Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, Basturkmen M, Spevak CC, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, Purcell S, Harris S, Braus GH, Draht O, Busch S, D'Enfert C, Bouchier C, Goldman GH, Bell-Pedersen D, Griffiths-Jones S, Doonan JH, Yu J, Vienken K, Pain A, Freitag M, Selker EU, Archer DB, Penalva MA, Oakley BR, Momany M, Tanaka T, Kumagai T, Asai K, Machida M, Nierman WC, Denning DW, Caddick M, Hynes M, Paoletti M, Fischer R, Miller B, Dyer P, Sachs MS, Osmani SA, Birren BW.
Nature   438(7071) 1105-1115   Dec 2005   [Refereed]
Nierman WC, Pain A, Anderson MJ, Wortman JR, Kim HS, Arroyo J, Berriman M, Abe K, Archer DB, Bermejo C, Bennett J, Bowyer P, Chen D, Collins M, Coulsen R, Davies R, Dyer PS, Farman M, Fedorova N, Fedorova N, Feldblyum TV, Fischer R, Fosker N, Fraser A, Garcia JL, Garcia MJ, Goble A, Goldman GH, Gomi K, Griffith-Jones S, Gwilliam R, Haas B, Haas H, Harris D, Horiuchi H, Huang J, Humphray S, Jimenez J, Keller N, Khouri H, Kitamoto K, Kobayashi T, Konzack S, Kulkarni R, Kumagai T, Lafon A, Latge JP, Li W, Lord A, Lu C, Majoros WH, May GS, Miller BL, Mohamoud Y, Molina M, Monod M, Mouyna I, Mulligan S, Murphy L, O'Neil S, Paulsen I, Penalva MA, Pertea M, Price C, Pritchard BL, Quail MA, Rabbinowitsch E, Rawlins N, Rajandream MA, Reichard U, Renauld H, Robson GD, Rodriguez de Cordoba S, Rodriguez-Pena JM, Ronning CM, Rutter S, Salzberg SL, Sanchez M, Sanchez-Ferrero JC, Saunders D, Seeger K, Squares R, Squares S, Takeuchi M, Tekaia F, Turner G, Vazquez de Aldana CR, Weidman J, White O, Woodward J, Yu JH, Fraser C, Galagan JE, Asai K, Machida M, Hall N, Barrell B, Denning DW.
Nature   438(7071) 1151-1155   Dec 2005   [Refereed]
Kinya Okada, Shigehiko Kanaya, Kiyoshi Asai
Bioinformatics   21(9) 2043-2048   May 2005   [Refereed]
Tsuyoshi Kato, Koji Tsuda, Kiyoshi Asai
Bioinformatics   21(10) 2488-2495   May 2005   [Refereed]
Hisanori Kiryu, Taku Oshima, Kiyoshi Asai
Bioinformatics   21(7) 1062-1068   Apr 2005   [Refereed]
Statistical evaluation of a bottom-up clustering for single particle molecular images.
Ueno Y, Isono K, Takahashi K, Shimonohara Y, Asai K
Genome informatics. International Conference on Genome Informatics   16(2) 125-135   2005   [Refereed]
Koji Tsuda, Shinsuke Uda, Taishin Kin, Kiyoshi Asai
NEURAL PROCESSING LETTERS   19 63-72   2004   [Refereed]
Hitoshi Iba, Shusuke Saeki, Kiyoshi Asai, Katsutoshi Takahashi, Yutaka Ueno, Katsunori Isono
Biosystems   72(1-2) 43-55   Nov 2003   [Refereed]
Koji Tsuda, Shotaro Akaho, Kiyoshi Asai
JOURNAL OF MACHINE LEARNING RESEARCH   4(1) 67-81   2003   [Refereed]
Processing sequence annotation data using the Lua programming language.
Ueno Y, Arita M, Kumagai T, Asai K
Genome informatics. International Conference on Genome Informatics   14 154-163   2003   [Refereed]
Shusuke Saeki, Kiyoshi Asai, Katsutoshi Takahashi, Yutaka Ueno, Katsunori Isono, Hitoshi Iba
GENOME INFORMATICS   13 133-142   Dec 2002   [Refereed]
Taishin Kin, Koji Tsuda, Kiyoshi Asai
GENOME INFORMATICS   13 112-122   Dec 2002   [Refereed]
Yutaka Ueno, Kiyoshi Asai
Journal of Molecular Graphics and Modelling   20(5) 411-413   Mar 2002   [Refereed]
Inference of Euler angles for single particle analysis by using Genetic Algorithms.
Saeki S, Asai K, Takahashi K, Ueno Y, Isono K, Iba H
Genome informatics. International Conference on Genome Informatics   13 133-142   2002   [Refereed]
Modeling splicing sites with pairwise correlations.
Arita M, Tsuda K, Asai K
Bioinformatics (Oxford, England)   18 Suppl 2 S27-34   2002   [Refereed]
Koji Tsuda, Taishin Kin, Kiyoshi Asai
Bioinformatics   18(suppl. 1) S268-S275   2002   [Refereed]

Research Grants & Projects

 
Fuctional RNA Project
New Energy Technology Research and Development
Project Year: 1995 - 2009