ベレンジェフランソワ (Francois Berenger) - マイポータル - researchmap

基本情報

所属: 東京大学大学院新領域創成科学研究科情報生命科学専攻

J-GLOBAL ID: 202001004775216907
researchmap会員ID: R000009175

研究キーワード

5

研究分野

2

論文

20

Quantum Annealing Designs Nonhemolytic Antimicrobial Peptides in a Discrete Latent Space

Andrejs Tučs, Francois Berenger, Akiko Yumoto, Ryo Tamura, Takanori Uzawa, Koji Tsuda

ACS Medicinal Chemistry Letters 14(5) 577-582 2023年4月13日
73

Molecular generation by Fast Assembly of (Deep)SMILES fragments

Francois Berenger, Koji Tsuda

Journal of Cheminformatics 13(1) 2021年12月筆頭著者責任著者
Lean-Docking: Exploiting Ligands’ Predicted Docking Scores to Accelerate Molecular Docking

Francois Berenger, Ashutosh Kumar, Kam Y. J. Zhang, Yoshihiro Yamanishi

Journal of Chemical Information and Modeling 61(5) 2341-2352 2021年4月16日
Improvement of the novel inhibitor for Mycobacterium enoyl-acyl carrier protein reductase (InhA): a structure-activity relationship study of KES4 assisted by in silico structure-based drug screening.

Junichi Taira, Tomohiro Umei, Keitaro Inoue, Mitsuru Kitamura, Francois Berenger, James C Sacchettini, Hiroshi Sakamoto, Shunsuke Aoki

The Journal of antibiotics 73(6) 372-381 2020年6月査読有り
Ranking Molecules with Vanishing Kernels and a Single Parameter: Active Applicability Domain Included.

Francois Berenger, Yoshihiro Yamanishi

Journal of chemical information and modeling 60(9) 4376-4387 2020年4月23日査読有り
Omics-based Identification of Glycan Structures as Biomarkers for a Variety of Diseases.

Sayaka Akiyoshi, Michio Iwata, Francois Berenger, Yoshihiro Yamanishi

Molecular informatics 39(1-2) e1900112 2020年1月査読有り
Predicting drug-induced transcriptome responses of a wide range of human cell lines by a novel tensor-train decomposition algorithm.

Michio Iwata, Longhao Yuan, Qibin Zhao, Yasuo Tabei, Francois Berenger, Ryusuke Sawada, Sayaka Akiyoshi, Momoko Hamano, Yoshihiro Yamanishi

Bioinformatics (Oxford, England) 35(14) i191-i199 2019年7月15日査読有り
Chemoinformatics and structural bioinformatics in OCaml.

Francois Berenger, Kam Y J Zhang, Yoshihiro Yamanishi

Journal of cheminformatics 11(1) 10-10 2019年2月5日査読有り
A Distance-Based Boolean Applicability Domain for Classification of High Throughput Screening Data.

Francois Berenger, Yoshihiro Yamanishi

Journal of chemical information and modeling 59(1) 463-476 2019年1月28日査読有り
Consensus queries in ligand-based virtual screening experiments.

Francois Berenger, Oanh Vu, Jens Meiler

Journal of cheminformatics 9(1) 60-60 2017年11月28日査読有り
Fragger: a protein fragment picker for structural queries.

Francois Berenger, David Simoncini, Arnout Voet, Rojan Shrestha, Kam Y J Zhang

F1000Research 6 1722-1722 2017年査読有り
Combining in silico and in cerebro approaches for virtual screening and pose prediction in SAMPL4.

Arnout R D Voet, Ashutosh Kumar, Francois Berenger, Kam Y J Zhang

Journal of computer-aided molecular design 28(4) 363-73 2014年4月査読有り
A rotation-translation invariant molecular descriptor of partial charges and its use in ligand-based virtual screening.

Francois Berenger, Arnout Voet, Xiao Yin Lee, Kam Yj Zhang

Journal of cheminformatics 6 23-23 2014年査読有り
1P044 Electrostatic similarities between protein and small molecules facilitate the rational design of protein-protein interaction inhibitors(01B. Protein:Structure & Function,Poster)

Voet Arnout, Berenger Francois, Zhang Kam

生物物理 53(1) S113 2013年
Electrostatic similarities between protein and small molecule ligands facilitate the design of protein-protein interaction inhibitors.

Arnout Voet, Francois Berenger, Kam Y J Zhang

PloS one 8(10) e75762 2013年査読有り
Durandal: fast exact clustering of protein decoys.

Francois Berenger, Rojan Shrestha, Yong Zhou, David Simoncini, Kam Y J Zhang

Journal of computational chemistry 33(4) 471-4 2012年2月5日査読有り
A probabilistic fragment-based protein structure prediction algorithm.

David Simoncini, Francois Berenger, Rojan Shrestha, Kam Y J Zhang

PloS one 7(7) e38799 2012年査読有り
Accelerating ab initio phasing with de novo models.

Rojan Shrestha, Francois Berenger, Kam Y J Zhang

Acta crystallographica. Section D, Biological crystallography 67(Pt 9) 804-12 2011年9月査読有り
Entropy-accelerated exact clustering of protein decoys.

Francois Berenger, Yong Zhou, Rojan Shrestha, Kam Y J Zhang

Bioinformatics (Oxford, England) 27(7) 939-45 2011年4月1日査読有り
PAR: a PARallel and distributed job crusher.

Francois Berenger, Camille Coti, Kam Y J Zhang

Bioinformatics (Oxford, England) 26(22) 2918-9 2010年11月15日査読有り