ベレンジェフランソワ (Francois Berenger) - マイポータル

基本情報

所属: 東京大学大学院新領域創成科学研究科情報生命科学専攻

ORCID iD: https://orcid.org/0000-0003-1377-944X
J-GLOBAL ID: 202001004775216907
researchmap会員ID: R000009175

研究キーワード

研究分野

論文

GPepT: A foundation language model for peptidomimetics incorporating non-canonical amino acids

Yuna Oikawa, Takanori Uzawa, Francois Berenger, Noriko Minagawa, Akiko Yumoto, Hideaki Takaku, Ryo Tamura, Yoshihiro Ito, Koji Tsuda

2025年4月8日
An ANI‐2 enabled open‐source protocol to estimate ligand strain after docking

Francois Berenger, Koji Tsuda

Journal of Computational Chemistry 2025年1月5日
CACHE Challenge #1: Targeting the WDR Domain of LRRK2, A Parkinson’s Disease Associated Protein

Fengling Li, Suzanne Ackloo, Cheryl H. Arrowsmith, Fuqiang Ban, Christopher J. Barden, Hartmut Beck, Jan Beránek, Francois Berenger, Albina Bolotokova, Guillaume Bret …

Journal of Chemical Information and Modeling 2024年11月25日
A community effort in SARS-CoV-2 drug discovery.

Johannes Schimunek, Philipp Seidl, Katarina Elez, Tim Hempel, Tuan Le, Frank Noé, Simon Olsson, Lluís Raich, Robin Winter, Hatice Gokcan …

Molecular informatics 43(1) e202300262 2024年1月
Ligand-based virtual-screening identified a novel CFTR ligand which improves the defective cell surface expression of misfolded ABC transporters.

Shogo Taniguchi, Francois Berenger, Yukako Doi, Ayana Mimura, Yoshihiro Yamanishi, Tsukasa Okiyoneda

Frontiers in pharmacology 15 1370676-1370676 2024年
3D-Sensitive Encoding of Pharmacophore Features

Francois Berenger, Koji Tsuda

Journal of Chemical Information and Modeling 63(8) 2360-2369 2023年4月24日
Quantum Annealing Designs Nonhemolytic Antimicrobial Peptides in a Discrete Latent Space

Andrejs Tučs, Francois Berenger, Akiko Yumoto, Ryo Tamura, Takanori Uzawa, Koji Tsuda

ACS Medicinal Chemistry Letters 14(5) 577-582 2023年4月13日
114

Molecular generation by Fast Assembly of (Deep)SMILES fragments

Francois Berenger, Koji Tsuda

Journal of Cheminformatics 13(1) 88-88 2021年12月筆頭著者責任著者
Lean-Docking: Exploiting Ligands’ Predicted Docking Scores to Accelerate Molecular Docking

Francois Berenger, Ashutosh Kumar, Kam Y. J. Zhang, Yoshihiro Yamanishi

Journal of Chemical Information and Modeling 61(5) 2341-2352 2021年4月16日
Improvement of the novel inhibitor for Mycobacterium enoyl-acyl carrier protein reductase (InhA): a structure-activity relationship study of KES4 assisted by in silico structure-based drug screening.

Junichi Taira, Tomohiro Umei, Keitaro Inoue, Mitsuru Kitamura, Francois Berenger, James C Sacchettini, Hiroshi Sakamoto, Shunsuke Aoki

The Journal of antibiotics 73(6) 372-381 2020年6月査読有り
Ranking Molecules with Vanishing Kernels and a Single Parameter: Active Applicability Domain Included.

Francois Berenger, Yoshihiro Yamanishi

Journal of chemical information and modeling 60(9) 4376-4387 2020年4月23日査読有り
Omics-based Identification of Glycan Structures as Biomarkers for a Variety of Diseases.

Sayaka Akiyoshi, Michio Iwata, Francois Berenger, Yoshihiro Yamanishi

Molecular informatics 39(1-2) e1900112 2020年1月査読有り
Predicting drug-induced transcriptome responses of a wide range of human cell lines by a novel tensor-train decomposition algorithm.

Michio Iwata, Longhao Yuan, Qibin Zhao, Yasuo Tabei, Francois Berenger, Ryusuke Sawada, Sayaka Akiyoshi, Momoko Hamano, Yoshihiro Yamanishi

Bioinformatics (Oxford, England) 35(14) i191-i199 2019年7月15日査読有り
Chemoinformatics and structural bioinformatics in OCaml.

Francois Berenger, Kam Y J Zhang, Yoshihiro Yamanishi

Journal of cheminformatics 11(1) 10-10 2019年2月5日査読有り
A Distance-Based Boolean Applicability Domain for Classification of High Throughput Screening Data.

Francois Berenger, Yoshihiro Yamanishi

Journal of chemical information and modeling 59(1) 463-476 2019年1月28日査読有り
Consensus queries in ligand-based virtual screening experiments.

Francois Berenger, Oanh Vu, Jens Meiler

Journal of cheminformatics 9(1) 60-60 2017年11月28日査読有り
Fragger: a protein fragment picker for structural queries.

Francois Berenger, David Simoncini, Arnout Voet, Rojan Shrestha, Kam Y J Zhang

F1000Research 6 1722-1722 2017年査読有り
Combining in silico and in cerebro approaches for virtual screening and pose prediction in SAMPL4.

Arnout R D Voet, Ashutosh Kumar, Francois Berenger, Kam Y J Zhang

Journal of computer-aided molecular design 28(4) 363-73 2014年4月査読有り
A rotation-translation invariant molecular descriptor of partial charges and its use in ligand-based virtual screening.

Francois Berenger, Arnout Voet, Xiao Yin Lee, Kam Yj Zhang

Journal of cheminformatics 6(1) 23-23 2014年査読有り
1P044 Electrostatic similarities between protein and small molecules facilitate the rational design of protein-protein interaction inhibitors(01B. Protein:Structure & Function,Poster)

Voet Arnout, Berenger Francois, Zhang Kam

生物物理 53(1) S113 2013年

もっとみる

MISC

インシリコスクリーニングによる新規CFTRコレクターの探索

谷口正伍, 福田亮介, BERENGER Francois, 澤田隆介, 山口美穂, 井上敬太郎, 青木俊介, 山西芳裕, 沖米田司

日本薬学会年会要旨集(Web) 140th 2020年
Tensor‐train分解アルゴリズムによる高次テンソルデータ解析:薬物応答遺伝子発現データへの応用

岩田通夫, YUAN Longhao, ZHAO Qibin, 田部井靖生, BERENGER Francois, 澤田隆介, 秋好紗弥香, 山西芳裕, 山西芳裕

日本計算機統計学会大会論文集 32nd 76‐77-77 2018年5月26日

ベレンジェフランソワ

基本情報

研究キーワード

研究分野

論文

MISC

メニュー

共著者の一覧

フォロー一覧