論文

査読有り
2020年3月

Kasumi leukemia cell lines: characterization of tumor genomes with ethnic origin and scales of genomic alterations.

Human cell
  • Fumio Kasai
  • ,
  • Hiroya Asou
  • ,
  • Midori Ozawa
  • ,
  • Kazuhiko Kobayashi
  • ,
  • Hiroyuki Kuramitsu
  • ,
  • Motonobu Satoh
  • ,
  • Arihiro Kohara
  • ,
  • Yasuhiko Kaneko
  • ,
  • Machiko Kawamura

33
3
開始ページ
868
終了ページ
876
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.1007/s13577-020-00347-5

Kasumi-1 has played an important role in an experimental model with t(8;21) translocation, which is a representative example of leukemia cell lines. However, previous studies using Kasumi-1 show discrepancies in the genome profile. The wide use of leukemia cell lines is limited to lines that are well-characterized. The use of additional cell lines extends research to various types of leukemia, and to further explore leukemia pathogenesis, which can be achieved by uncovering the fundamental features of each cell line with accurate data. In this study, ten Kasumi cell lines established in Japan, including five that were previously unknown, have been characterized by SNP microarray and targeted sequencing. SNP genotyping suggested that the genetic ancestry in four of the ten Kasumi cell lines was not classified as Japanese but covered several different east-Asian ethnicities, suggesting that patients in Japan are genetically diverse. TP53 mutations were detected in two cell lines with complex array profiles, indicating chromosomal instability (CIN). A quantitative assessment of tumor genomes at the chromosomal level was newly introduced to reveal total DNA sizes and Scales of Genomic Alterations (SGA) for each cell line. Kasumi-1 and 6 derived from relapsed phases demonstrated high levels of SGA, implying that the level of SGA would reflect on the tumor progression and could serve as an index of CIN. Our results extend the leukemia cellular resources with an additional five cell lines and provide reference genome data with ethnic identities for the ten Kasumi cell lines.

リンク情報
DOI
https://doi.org/10.1007/s13577-020-00347-5
PubMed
https://www.ncbi.nlm.nih.gov/pubmed/32180206
PubMed Central
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7324421
ID情報
  • DOI : 10.1007/s13577-020-00347-5
  • PubMed ID : 32180206
  • PubMed Central 記事ID : PMC7324421

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