Self-organization in the toroidal electron temperature gradient driven (ETG) turbulence is investigated based on a global gyrokinetic model in a weak magnetic shear configuration. Because of global profile effects, toroidal ETG modes with a higher toroidal mode number n are excited at the outer magnetic surfaces, leading to strong linear wave dispersion. The resulting anisotropic wave turbulence boundary and the inverse energy cascade generate the self-organization of zonal flows, which is the unique mechanism in the global gyrokinetic model. The self-organization is confirmed both in the decaying turbulence initialized by random noises and in the toroidal ETG turbulence. It is also shown that the self-organization process generates zonal flows and isotropic eddies depending on a criterion parameter, which is determined by the ion to electron temperature ratio and the turbulence intensity.