Daisuke Kuroda

J-GLOBAL         Last updated: Oct 12, 2019 at 15:14
 
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Name
Daisuke Kuroda
URL
https://sites.google.com/site/dkuroda1905/
Affiliation
The University of Tokyo
Section
Medical Device Development and Regulation Research Center, School of Engineering
Job title
Lecturer
Degree
Ph.D.
ORCID ID
0000-0003-2390-4785

Research Areas

 
 

Education

 
Apr 2006
 - 
Mar 2011
Institute for Protein Research, Osaka University
 
Apr 2002
 - 
Mar 2006
School of Pharmacy, Kitasato University
 

Published Papers

 
Morimoto J, Fukuda Y, Kuroda D, Watanabe T, Yoshida F, Asada M, Nakamura T, Senoo A, Nagatoishi S, Tsumoto K, Sando S
Journal of the American Chemical Society   141(37) 14612-14623   Aug 2019   [Refereed]
Eguchi A, Nakakido M, Nagatoishi S, Kuroda D, Tsumoto K, Nagamune T, Kawahara M
Biotechnology and bioengineering   116(7) 1742-1751   Jul 2019   [Refereed]
Yoshida K, Kuroda D, Kiyoshi M, Nakakido M, Nagatoishi S, Soga S, Shirai H, Tsumoto K
Scientific reports   9(1) 4482   Mar 2019   [Refereed]
Yoshida K, Nagatoshi S, Kuroda D, Suzuki N, Murata T, and Tsumoto K
Biochemistry   58(6) 504-508   Jan 2019   [Refereed]
Takahashi T, Nagatoishi S, Kuroda D, Tsumoto K
PloS one   13(10) e0204856   Oct 2018   [Refereed]
Kuroda D, Tsumoto K
Methods in Molecular Biology   1827 15-34   Sep 2018   [Refereed][Invited]
Miyanabe K, Akiba H, Kuroda D, Nakakido M, Kusano-Arai O, Iwanari H, Hamakubo T, Caaveiro JMM, Tsumoto K
Journal of Biochemistry   164(1) 65-76   Jul 2018   [Refereed]
Jeliazkov JR, Sljoka A, Kuroda D, Tsuchimura N, Katoh N, Tsumoto K, Gray JJ
Frontiers in Immunology   9 413   Mar 2018   [Refereed]
Kiyoshi M, Caaveiro JMM, Tada M, Tamura H, Tanaka T, Terao Y, Morante K, Harazono A, Hashii N, Shibata H, Kuroda D, Nagatoishi S, Oe S, Ide T, Tsumoto K, Ishii-Watabe A
Scientific Reports   8(1) 3955   Mar 2018   [Refereed]
Hashiguchi T, Fukuda Y, Matsuoka R, Kuroda D, Kubota M, Shirogane Y, Watanabe S, Tsumoto K, Kohda D, Plemper RK, Yanagi Y
Proceedings of the National Academy of Sciences of the United States of America   115(10) 2496-2501   Mar 2018   [Refereed]

Books etc

 
Current status of computer-aided antibody design
Daisuke Kuroda, Kouhei Tsumoto (Part:Joint Work)
Yodosha   Jun 2018   
Analytical Tips for Biopharmaceutics: foundation and application for quality assessment, Part 7: Protein interactions
Kouhei Tsumoto, Satoru Nagatoshi, Makoto Nakakido, Daisuke Kuroda (Part:Joint Work)
PHARM TECH JAPAN Vol.34 No.2   Feb 2018   
Antibody Informatics
Hiroki Shirai, Daisuke Kuroda (Part:Joint Work, Chapter 4.1, pp.27-46)
Frontier of Antibody Engineering for Next-generation Therapeutics, CMC Publishing CO.,LTD.   Dec 2012   
Protein bioinformatics for drug discovery = concavity druggability and antibody druggability =
Shirai H, Mizuguchi K, Kuroda D, Nakamura H, Soga S, Kobori M, and Hirayama N. (Part:Joint Work, pp.11-18)
Computational Biology: New Research, Nova Science Publishers, Inc.   2009   

Conference Activities & Talks

 
Computer-aided antibody design: current status and future prospects [Invited]
Daisuke Kuroda
Focused Session in CBI Anual Meeting 2019   22 Oct 2019   
Addressing the Benefits of Simulations in Computer-aided Antibody Engineering [Invited]
Daisuke Kuroda
Biologics Manufacturing Japan 2019   18 Sep 2019   
Computational modeling algorithms in antibody engineering: How precise are they? [Invited]
Daisuke Kuroda, Kouhei Tsumoto
Workshop in Joint Annual Meeting of 71st JSCB & 19th PSSJ   24 Jun 2019   
Exploring antibody designability through physicochemical analyses, mutagenesis and computations [Invited]
Daisuke Kuroda
New Frontiers of Protein Design and Engineering: Structure, Function, and Application, IMS Symposium   16 Mar 2019   
Protein Informatics [Invited]
Daisuke Kuroda
Seminar at Sysmex   27 Dec 2018   
Computer-aided Antibody Engineering [Invited]
Daisuke Kuroda
4th Workshop of Protein Engineering at Protein Science Society of Japan   25 Jun 2018   
Modeling Protein Structures and Interactions through Computer Simulations [Invited]
Daisuke Kuroda
Lecture series, The University of Tokyo   7 Mar 2018   
Interplay between conformer selection and induced-fit in protein-protein recognition: Insight from docking simulations [Invited]
Daisuke Kuroda
先端融合科学シンポジウム 生体分子のダイナミクスを眺める   19 Jan 2015   
Antibody structure prediction toward design [Invited]
Daisuke Kuroda
IPR Seminar   14 Jan 2014   
Five years research life at IPR and the following 4 years [Invited]
Daisuke Kuroda
IPR Retreat 2014   1 Dec 2014   

Teaching Experience