Itoshi NIKAIDO

J-GLOBAL         Last updated: Jul 29, 2019 at 23:52
 
Avatar
Name
Itoshi NIKAIDO
Affiliation
RIKEN
Research funding number
00383290
ORCID ID
0000-0002-7261-2570

Research Areas

 
 

Academic & Professional Experience

 
Jun 2018
 - 
Today
Professor (Collaborative Graduate School Program), Bioinformatics Course, Master’s/Doctoral Program in Life Science Innovation (T-LSI), School of Integrative and Global Majors (SIGMA), University of Tsukuba
 
Apr 2018
 - 
Today
Unit Leader, Laboratory for Bioinformatics Research, RIKEN Center for Biosystems Dynamics Research
 
Jun 2017
 - 
Mar 2018
Unit Leader, Single-cell Omics Unit, RIKEN Center for Developmental Biology
 
Apr 2013
 - 
Mar 2018
Unit Leader, Bioinformatics Research Unit, RIKEN Advanced Center for Computing and Communication
 
Jun 2006
 - 
Mar 2013
研究員, Functional Genomic Unit, RIKEN Center for Developmental Biology
 

Education

 
Apr 2001
 - 
Mar 2004
Science of Biological Supramolecular Systems, Yokohama City University
 

Published Papers

 
Sasagawa Y, Hayashi T, Nikaido I
Advances in experimental medicine and biology   1129 1-17   Apr 2019   [Refereed]
Sato K, Tsuyuzaki K, Shimizu K, Nikaido I
Genome biology   20(1) 31   Feb 2019   [Refereed]
Kobayashi H, Nagahama T, Arai W, Sasagawa Y, Umeda M, Hayashi T, Nikaido I, Watanabe H, Oguri K, Kitazato H, Fujioka K, Kido Y, Takami H
Bioscience, biotechnology, and biochemistry   1-11   Apr 2018   [Refereed]
Sasagawa Y, Danno H, Takada H, Ebisawa M, Tanaka K, Hayashi T, Kurisaki A, Nikaido I
Genome biology   19(1) 29   Mar 2018   [Refereed]
Hayashi T, Ozaki H, Sasagawa Y, Umeda M, Danno H, Nikaido I
Nature communications   9(1) 619   Feb 2018   [Refereed]
Chai M, Sanosaka T, Okuno H, Zhou Z, Koya I, Banno S, Andoh-Noda T, Tabata Y, Shimamura R, Hayashi T, Ebisawa M, Sasagawa Y, Nikaido I, Okano H, Kohyama J
Genes & development   32(2) 165-180   Jan 2018   [Refereed]
Tsuyuzaki K, Nikaido I
HeteroNAM’18. WSDM2018      2018   [Refereed]
Matsumoto H, Kiryu H, Furusawa C, Ko MS, Ko SB, Gouda N, Hayashi T, Nikaido I
Bioinformatics (Oxford, England)   33(15) 2314-2321   Apr 2017   [Refereed]
Sasagawa Y, Nikaido I, Hayashi T, Danno H, Uno KD, Imai T, Ueda HR
Genome biology   18(1) 9   Jan 2017   [Refereed]
Tsuyuzaki K, Morota G, Ishii M, Nakazato T, Miyazaki S, Nikaido I
BMC bioinformatics   16 45   Feb 2015   [Refereed]
Adachi K, Nikaido I, Ohta H, Ohtsuka S, Ura H, Kadota M, Wakayama T, Ueda HR, Niwa H
Molecular cell   52 380-392   Nov 2013   [Refereed]
Sasagawa Y, Nikaido I, Hayashi T, Danno H, Uno KD, Imai T, Ueda HR
Genome biology   14 R31   Apr 2013   [Refereed]
Yoshimoto N, Kida A, Jie X, Kurokawa M, Iijima M, Niimi T, Maturana AD, Nikaido I, Ueda HR, Tatematsu K, Tanizawa K, Kondo A, Fujii I, Kuroda S
Scientific reports   3 1191   2013   [Refereed]
Okamura-Oho Y, Shimokawa K, Takemoto S, Hirakiyama A, Nakamura S, Tsujimura Y, Nishimura M, Kasukawa T, Masumoto KH, Nikaido I, Shigeyoshi Y, Ueda HR, Song G, Gee J, Himeno R, Yokota H
PloS one   7 e45373   2012   [Refereed]
Kasukawa T, Masumoto KH, Nikaido I, Nagano M, Uno KD, Tsujino K, Hanashima C, Shigeyoshi Y, Ueda HR
PloS one   6 e23228   2011   [Refereed]
Tokuzawa Y, Yagi K, Yamashita Y, Nakachi Y, Nikaido I, Bono H, Ninomiya Y, Kanesaki-Yatsuka Y, Akita M, Motegi H, Wakana S, Noda T, Sablitzky F, Arai S, Kurokawa R, Fukuda T, Katagiri T, Schönbach C, Suda T, Mizuno Y, Okazaki Y
PLoS genetics   6 e1001019   Jul 2010   [Refereed]
Suzuki K, Ohbayashi F, Nikaido I, Okuda A, Takaki H, Okazaki Y, Mitani K
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology   18 191-201   Feb 2010   [Refereed]
Nakachi Y, Yagi K, Nikaido I, Bono H, Tonouchi M, Schönbach C, Okazaki Y
Biochemical and biophysical research communications   372(2) 362-366   Jul 2008   [Refereed]
Nikaido I, Saito C, Wakamoto A, Tomaru Y, Arakawa T, Hayashizaki Y, Okazaki Y
Nucleic acids research   32 D548-51   Jan 2004   [Refereed]
Kasukawa T, Furuno M, Nikaido I, Bono H, Hume DA, Bult C, Hill DP, Baldarelli R, Gough J, Kanapin A, Matsuda H, Schriml LM, Hayashizaki Y, Okazaki Y, Quackenbush J
Genome research   13 1542-1551   Jun 2003   [Refereed]
Nikaido I, Saito C, Mizuno Y, Meguro M, Bono H, Kadomura M, Kono T, Morris GA, Lyons PA, Oshimura M, Hayashizaki Y, Okazaki Y, RIKEN GER Group, GSL Members
Genome research   13 1402-1409   Jun 2003   [Refereed]
Bono H, Nikaido I, Kasukawa T, Hayashizaki Y, Okazaki Y, RIKEN GER Group, GSL Members
Genome research   13 1345-1349   Jun 2003   [Refereed]
Bono H, Yagi K, Kasukawa T, Nikaido I, Tominaga N, Miki R, Mizuno Y, Tomaru Y, Goto H, Nitanda H, Shimizu D, Makino H, Morita T, Fujiyama J, Sakai T, Shimoji T, Hume DA, Hayashizaki Y, Okazaki Y, RIKEN GER Group, GSL Members
Genome research   13 1318-1323   Jun 2003   [Refereed]
Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, Nogami A, Schönbach C, Gojobori T, Baldarelli R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A, Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V, Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF, Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ, Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL, Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR, Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K, Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R, Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C, Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z, Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N, Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K, Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A, Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M, Waterston R, Lander ES, Rogers J, Birney E, Hayashizaki Y, FANTOM Consortium., RIKEN Genome Exploration Research Group Phase I & II Team.
Nature   420(6915) 563-573   Dec 2002   [Refereed]
Mizuno Y, Sotomaru Y, Katsuzawa Y, Kono T, Meguro M, Oshimura M, Kawai J, Tomaru Y, Kiyosawa H, Nikaido I, Amanuma H, Hayashizaki Y, Okazaki Y
Biochemical and biophysical research communications   290(5) 1499-1505   Feb 2002   [Refereed]
Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T, Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K, Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W, Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F, Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M, Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N, Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C, Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA, Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J, Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto N, Sasaki H, Sato K, Schönbach C, Seya T, Shibata Y, Storch KF, Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L, Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S, Hayashizaki Y, RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium.
Nature   409(6821) 685-690   Feb 2001   [Refereed]
Nikaido I, Asamizu E, Nakajima M, Nakamura Y, Saga N, Tabata S
DNA research : an international journal for rapid publication of reports on genes and genomes   7(3) 223-227   Jun 2000   [Refereed]

Misc

 
二階堂愛
月刊メディカル・サイエンス・ダイジェスト   44(1) 5‐6   Jan 2018
團野宏樹, 二階堂愛
生体の科学   68(2) 178‐184   Apr 2017
二階堂愛
生物物理(Web)   56(6) 330‐333(J‐STAGE)   2016

Conference Activities & Talks

 
飯田剛, 神山淳, 名越慈人, 辻収彦, 二階堂愛, 佐野坂司, 西村空也, 小林喜臣, 松本守雄, 岡野栄之, 中村雅也
日本整形外科学会雑誌   31 Aug 2017   
二階堂愛
日本核酸医薬学会年会講演要旨集   1 Jul 2017   
林哲太郎, 尾崎遼, 笹川洋平, 團野宏樹, 梅田茉奈, 二階堂愛
日本生化学会大会(Web)   2017   
小林英城, 荒井渉, 高見秀人, 笹川洋平, 梅田茉奈, 林哲太郎, 二階堂愛
ブルーアース要旨集   2017