山守優 (Yu Yamamori) - マイポータル

A multipoint guidance mechanism for beta-barrel folding on the SAM complex

Hironori Takeda, Jon V. Busto, Caroline Lindau, Akihisa Tsutsumi, Kentaro Tomii, Kenichiro Imai, Yu Yamamori, Takatsugu Hirokawa, Chie Motono, Iniyan Ganesan, Lena-Sophie Wenz, Thomas Becker, Masahide Kikkawa, Nikolaus Pfanner, Nils Wiedemann, Toshiya Endo

NATURE STRUCTURAL & MOLECULAR BIOLOGY 2023年1月査読有り

Protein-protein interaction prediction methods: from docking-based to AI-based approaches.

Yuko Tsuchiya, Yu Yamamori, Kentaro Tomii

Biophysical reviews 14(6) 1341-1348 2022年12月査読有り

Crystal structure of Tam41 cytidine diphosphate diacylglycerol synthase from a Firmicutes bacterium.

Keisuke Kimura, Fumihiro Kawai, Hisako Kubota-Kawai, Yasunori Watanabe, Kentaro Tomii, Rieko Kojima, Kunio Hirata, Yu Yamamori, Toshiya Endo, Yasushi Tamura

Journal of biochemistry 171(4) 429-441 2022年3月31日査読有り

Application of Homology Modeling by Enhanced Profile-Profile Alignment and Flexible-Fitting Simulation to Cryo-EM Based Structure Determination

Yu Yamamori, Kentaro Tomii

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 23(4) 2022年2月査読有り

Modeling SARS-CoV-2 proteins in the CASP-commons experiment.

Andriy Kryshtafovych, John Moult, Wendy M Billings, Dennis Della Corte, Krzysztof Fidelis, Sohee Kwon, Kliment Olechnovič, Chaok Seok, Česlovas Venclovas, Jonghun Won

Proteins 89(12) 1987-1996 2021年12月査読有り

HMGB1 signaling phosphorylates Ku70 and impairs DNA damage repair in Alzheimer's disease pathology

Hikari Tanaka, Kanoh Kondo, Kyota Fujita, Hidenori Homma, Kazuhiko Tagawa, Xiaocen Jin, Meihua Jin, Yuki Yoshioka, Sumire Takayama, Hitomi Masuda, Rie Tokuyama, Yukoh Nakazaki, Takashi Saito, Takaomi Saido, Shigeo Murayama, Teikichi Ikura, Nobutoshi Ito, Yu Yamamori, Kentaro Tomii, Marco E. Bianchi, Hitoshi Okazawa

COMMUNICATIONS BIOLOGY 4(1) 2021年10月査読有り

An ensemble reweighting method for combining the information of experiments and simulations

Yu Yamamori, Kentaro Tomii

CHEMICAL PHYSICS LETTERS 779 2021年9月査読有り

Mitochondrial sorting and assembly machinery operates by beta-barrel switching

Hironori Takeda, Akihisa Tsutsumi, Tomohiro Nishizawa, Caroline Lindau, Jon Busto, Lena-Sophie Wenz, Lars Ellenrieder, Kenichiro Imai, Sebastian P. Straub, Waltraut Mossmann, Jian Qiu, Yu Yamamori, Kentaro Tomii, Junko Suzuki, Takeshi Murata, Satoshi Ogasawara, Osamu Nureki, Thomas Becker, Nikolaus Pfanner, Nils Wiedemann, Masahide Kikkawa, Toshiya Endo

NATURE 590(7844) 163-+ 2021年2月査読有り

Crim1(C140S) mutant mice reveal the importance of cysteine 140 in the internal region 1 of CRIM1 for its physiological functions

Tatsuya Furuichi, Manami Tsukamoto, Masaki Saito, Yuriko Sato, Nobuyasu Oiji, Kazuhiro Yagami, Ryutaro Fukumura, Yoichi Gondo, Long Guo, Shiro Ikegawa, Yu Yamamori, Kentaro Tomii

MAMMALIAN GENOME 30(11-12) 329-338 2019年12月査読有り

Free-energy analysis of the hydration and cosolvent effects on the β-sheet aggregation through all-atom molecular dynamics simulation.

Masutani K, Yamamori Y, Kim K, Matubayasi N

The Journal of chemical physics 150(14) 145101 2019年4月査読有り

Probabilistic analysis for identifying the driving force of protein folding

Yoshihiko Tokunaga, Yu Yamamori, Nobuyuki Matubayasi

JOURNAL OF CHEMICAL PHYSICS 148(12) 2018年3月査読有り

Interaction-component analysis of the effects of urea and its alkylated derivatives on the structure of T4-lysozyme

Yu Yamamori, Nobuyuki Matubayasi

JOURNAL OF CHEMICAL PHYSICS 146(22) 225123 2017年6月査読有り

シトクロム c に対する水および尿素の溶媒和効果の相互作用成分解析

山守優