Shigehiro Kuraku

J-GLOBAL         Last updated: Sep 27, 2019 at 14:08
 
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Name
Shigehiro Kuraku
URL
https://www.bdr.riken.jp/en/research/labs/kuraku-s/
Section
RIKEN Center for Biosystems Dynamics Research
Research funding number
40391940
ORCID ID
0000-0003-1464-8388

Research Areas

 
 

Academic & Professional Experience

 
Apr 2019
 - 
Today
Team Leader, Laboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research
 
Apr 2018
 - 
Today
Unit Leader, Laboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research
 
Nov 2014
 - 
Mar 2018
Unit Leader, Phyloinformatics Unit, RIKEN Center for Life Science Technologies
 
Mar 2012
 - 
Nov 2014
Unit Leader, Genome Resource and Analysis Unit, RIKEN Center for Developmental Biology
 
Apr 2010
 - 
May 2013
Principal Investigator, International Max Planck Research School for Organismal Biology
 
Apr 2009
 - 
Feb 2012
Principal Investigator, Konstanz Research School Chemical Biology
 
Apr 2007
 - 
Feb 2012
Akademischer Rat, University of Konstanz
 
Feb 2005
 - 
Mar 2007
Research Scientist, RIKEN CDB
 
Apr 2004
 - 
Jan 2005
Research Associate, RIKEN CDB
 

Education

 
Apr 2001
 - 
Mar 2004
Doctor program, Graduate School of Science, Kyoto University
 

Awards & Honors

 
2007
Timescale for cyclostome evolution inferred with a phylogenetic diagnosis of hagfish and lamprey cDNA sequences., Zoological Science Award, The Zoological Society of Japan
 

Published Papers

 
Takushi Kishida, Yasuhiro Go, Shoji Tatsumoto, Kaori Tatsumi, Shigehiro Kuraku, Mamoru Toda.
Proceedings of the Royal Society B: Biological Sciences   286(1910) 20191828   Sep 2019   [Refereed]
Juan C. Opazo, Shigehiro Kuraku, Kattina Zavala, Jessica Toloza-Villalobos, Federico G. Hoffmann.
Evolution & Development   21(4) 205-217   Jun 2019   [Refereed]
Itaru Imaseki, Midori Wakabayashi, Yuichiro Hara, Taro Watanabe, Souichirou Takabe, Keigo Kakumura, Yuki Honda, Keiichi Ueda, Kiyomi Murakumo, Rui Matsumoto, Yosuke Matsumoto, Masaru Nakamura, Wataru Takagi, Shigehiro Kuraku, Susumu Hyodo.
Journal of Experimental Biology   222 jeb201780   Jun 2019   [Refereed]
Nathalie Feiner, Fumio Motone, Axel Meyer, Shigehiro Kuraku.
Scientific Reports   9 3136   Feb 2019   [Refereed]
Masanori Kawaguchi, Kota Sugiyama, Kazumi Matsubara, Che-Yi Lin, Shigehiro Kuraku, Shota Hashimoto, Yoshiaki Suwa, Luok Wen Yong, Koji Takino, Shota Higashida, Daisuke Kawamura, Jr-Kai Yu, Yoshiyuki Seki.
Development   146 dev168633   Jan 2019   [Refereed]
Eri Okamoto, Yuuta Moriyama, Shigehiro Kuraku, Kei-ichi Kai, Mikiko Tanaka.
Development, Growth & Differentiation   61 97-103   Jan 2019   [Refereed]
Osamu Nishimura, Yuichiro Hara, Shigehiro Kuraku.
Methods in Molecular Biology 'Eukaryotic Gene Prediction'   1962 247-256   Mar 2019   [Refereed]
Chiharu Tanegashima, Osamu Nishimura, Fumio Motone, Kaori Tatsumi, Mitsutaka Kadota & Shigehiro Kuraku
Scientific Data   5 180200   Oct 2018   [Refereed]
Hara Y, Yamaguchi K, Onimaru K, Kadota M, Koyanagi M, Keeley SD, Tatsumi K, Tanaka K, Motone F, Kageyama Y, Nozu R, Adachi N, Nishimura O, Nakagawa R, Tanegashima C, Kiyatake I, Matsumoto R, Murakumo K, Nishida K, Terakita S, Kuratani S, Sato K, Hyodo S, Kuraku S.
Nature Ecology and Evolution   2 1761-1771   Oct 2018   [Refereed]
Nabeshima R, Nishimura O, Maeda T, Shimizu N, Ide T, Yashiro K, Sakai Y, Meno C, Kadota M, Shiratori H, Kuraku S, Hamada H.
eLife   7 e36435   Aug 2018   [Refereed]
Hara Y, Takeuchi M, Kageyama Y, Tatsumi K, Hibi M, Kiyonari H, Kuraku S.
BMC Biology   16 40   Apr 2018   [Refereed]
Okamoto E, Kusakabe R, Kuraku S, Hyodo S, Robert-Moreno A, Onimaru K, Sharpe J, Kuratani S, Tanaka M
Nature ecology & evolution   1(11) 1731-1736   Oct 2017   [Refereed]
Onimaru K, Kuraku S
Briefings in functional genomics   17(5) 352-361   Mar 2018   [Refereed]
Ishijima J, Uno Y, Nunome M, Nishida C, Kuraku S, Matsuda Y
DNA research : an international journal for rapid publication of reports on genes and genomes   24(1) 93-101   Feb 2017   [Refereed]
Kadota M, Hara Y, Tanaka K, Takagi W, Tanegashima C, Nishimura O, Kuraku S
Scientific reports   7(1) 4957   Jul 2017   [Refereed]
Onimaru K, Motone F, Kiyatake I, Nishida K, Kuraku S
Developmental dynamics : an official publication of the American Association of Anatomists   247(5) 712-723   Feb 2018   [Refereed]
Takeuchi M, Yamaguchi S, Sakakibara Y, Hayashi T, Matsuda K, Hara Y, Tanegashima C, Shimizu T, Kuraku S, Hibi M
The Journal of comparative neurology   525(7) 1558-1585   May 2017   [Refereed]
Nishimura O, Hara Y, Kuraku S
Bioinformatics (Oxford, England)   33(22) 3635-3637   Nov 2017   [Refereed]
Okamoto E, Kusakabe R, Kuraku S, Hyodo S, Robert-Moreno A, Onimaru K, Sharpe J, Kuratani S, Tanaka M
Nature ecology & evolution   1(11) 1784   Nov 2017   [Refereed]
Niwa H, Nakamura A, Urata M, Shirae-Kurabayashi M, Kuraku S, Russell S, Ohtsuka S
BMC evolutionary biology   16(1) 173   Aug 2016   [Refereed]

Books etc

 
Gene Prediction
Shigehiro Kuraku (Part:Contributor, 15. Evaluating Genome Assemblies and Gene Models Using gVolante)
Springer   2019   ISBN:978-1-4939-9173-0
Morphology and Evolution of Turtles
Shigehiro Kuraku (Part:Contributor, Origin of the turtle body plan - The folding theory to illustrate turtle-specific developmental repatterning.)
Springer   Sep 2012   ISBN:978-94-007-4308-3
Methods in Molecular Biology
Shigehiro Kuraku (Part:Contributor, Detection and phylogenetic assessment of conserved synteny derived from whole genome duplications in the volume 'Evolutionary Genomics: statistical and computational methods'.)
Springer   Feb 2012   ISBN:978-1-61779-581-7
Evolution after Gene Duplication
Shigehiro Kuraku (Part:Contributor, Whole Genome Duplications and the Radiation of Vertebrates)
Wiley-Blackwell, NY.   Sep 2010   ISBN:9780470593820
ニコラス・H. バートン, ジョナサン・A. アイゼン, デイビッド・B. ゴールドステイン, ニパム・H. パテル, デレク・E.G. ブリッグス
メディカルサイエンスインターナショナル   Dec 2009   ISBN:4895926214
The Timetree of Life
Shigehiro Kuraku (Part:Contributor, Jawless Fishes (Cyclostomata))
Oxford University Press   Jun 2009   ISBN:978-0199535033
羊土社   Dec 2004   ISBN:4897061075
Jawless fishes of the World
Shigehiro Kuraku (Part:Contributor, Chapter 2. Molecular Evolution in the Lamprey Genomes and Its Relevance to the Timing of Whole Genome Duplications.)
Feb 2016   ISBN:978-1-4438-8582-9

Research Grants & Projects

 
AMED: Drug discovery platform
Project Year: Apr 2018 - Mar 2019    Investigator(s): Jun Kawai
Phylogenetics of early vertebrate genomes: an approach to understanding genomic innovations as sources of phenotypic evolution
German Research Foundation (Deutsche Forschungsgemeinschaft, DFG): Sachbeihilfe
Project Year: Sep 2009 - Feb 2012    Investigator(s): Shigehiro Kuraku
Gene expression profiling of uncharacterized components of the ancestral vertebrate genome using the lesser spotted dogfish Scyliorhinus canicula
Association of European Marine Biological Laboratories funded by European Commission CORDIS with Seventh Framework Programme (FP7): Assemble
Project Year: May 2010 - Nov 2010    Investigator(s): Shigehiro Kuraku