SKIBBE Henrik (Henrik Skibbe) - マイポータル

基本情報

所属: 松山大学情報学科教授
: 特定国立研究開発法人理化学研究所ユニット・リーダー

J-GLOBAL ID: 201401070569863631
researchmap会員ID: 7000010582

外部リンク: http://bia.riken.jp

研究分野

情報通信 / 知覚情報処理 /

論文

Benchmarking Evaluation Metrics for Tubular Structure Segmentation in Biomedical Images

Méghane Decroocq, Charissa Poon, Matthias Schlachter, Henrik Skibbe

2026年
Prediction of white matter hyperintensities evolution one-year post-stroke from a single-point brain MRI and stroke lesions information

Muhammad Febrian Rachmadi, Maria del C. Valdés-Hernández, Stephen Makin, Joanna Wardlaw, Henrik Skibbe

Scientific Reports 15(1) 2025年12月
The astrocytic ensemble acts as a multiday trace to stabilize memory

Ken-ichi Dewa, Kodai Kaseda, Aoi Kuwahara, Hideaki Kubotera, Ayato Yamasaki, Natsumi Awata, Atsuko Komori, Mika A. Holtz, Atsushi Kasai, Henrik Skibbe …

Nature 2025年10月15日
Serial Two-Photon Tomography of the Whole Marmoset Brain for Neuroanatomical Analyses.

Akiya Watakabe, Toshiki Tani, Hiroshi Abe, Henrik Skibbe, Noritaka Ichinohe, Tetsuo Yamamori

Journal of visualized experiments : JoVE (215) 2025年1月17日
Use of DeTerm for Automated Drosophila Dendrite Arbor Terminal Counts.

Minami Kimura, Jason Y Tann, Oliver R Wilkes, Fangke Xu, Henrik Skibbe, Adrian W Moore

Cold Spring Harbor protocols 2024(12) pdb.prot108151 2024年12月2日
Machine learning-guided reconstruction of cytoskeleton network from live-cell AFM images.

Hanqiu Ju, Henrik Skibbe, Masaya Fukui, Shige H Yoshimura, Honda Naoki

iScience 27(10) 110907-110907 2024年10月18日
A new family of instance-level loss functions for improving instance-level segmentation and detection of white matter hyperintensities in routine clinical brain MRI.

Muhammad Febrian Rachmadi, Michal Byra, Henrik Skibbe

Computers in biology and medicine 174 108414-108414 2024年5月
Multi-scale Stochastic Generation of Labelled Microscopy Images for Neuron Segmentation

Meghane Decroocq, Binbin Xu, Katherine L. Thompson-Peer, Adrian Moore, Henrik Skibbe

Proceedings of Machine Learning Research 250 352-366 2024年
Distinctiveness and continuity in transcriptome and connectivity in the anterior-posterior axis of the paraventricular nucleus of the thalamus

Yasuyuki Shima, Henrik Skibbe, Yohei Sasagawa, Noriko Fujimori, Yoshimi Iwayama, Ayako Isomura-Matoba, Minoru Yano, Takumi Ichikawa, Itoshi Nikaido, Nobutaka Hattori …

Cell Reports 42(10) 2023年10月31日
Exploring the performance of implicit neural representations for brain image registration

Michal Byra, Charissa Poon, Muhammad Febrian Rachmadi, Matthias Schlachter, Henrik Skibbe

Scientific Reports 13(1) 2023年10月
The Brain/MINDS Marmoset Connectivity Resource: An open-access platform for cellular-level tracing and tractography in the primate brain

Henrik Skibbe, Muhammad Febrian Rachmadi, Ken Nakae, Carlos Enrique Gutierrez, Junichi Hata, Hiromichi Tsukada, Charissa Poon, Matthias Schlachter, Kenji Doya, Piotr Majka …

PLOS Biology 21(6) e3002158-e3002158 2023年6月29日
Local and long-distance organization of prefrontal cortex circuits in the marmoset brain.

Akiya Watakabe, Henrik Skibbe, Ken Nakae, Hiroshi Abe, Noritaka Ichinohe, Muhammad Febrian Rachmadi, Jian Wang, Masafumi Takaji, Hiroaki Mizukami, Alexander Woodward …

Neuron 111(14) 2258-2273 2023年5月9日
Multi-modal brain magnetic resonance imaging database covering marmosets with a wide age range

Junichi Hata, Ken Nakae, Hiromichi Tsukada, Alexander Woodward, Yawara Haga, Mayu Iida, Akiko Uematsu, Fumiko Seki, Noritaka Ichinohe, Rui Gong …

Scientific Data 10(1) 221 2023年4月27日
Tomographic tract tracing and data driven approaches to unravel complex 3D fiber anatomy of DBS relevant prefrontal projections to the diencephalic-mesencephalic junction in the marmoset.

Volker A Coenen, Akiya Watakabe, Henrik Skibbe, Tetsuo Yamamori, Máté D Döbrössy, Bastian E A Sajonz, Peter C Reinacher, Marco Reisert

Brain stimulation 16(2) 670-681 2023年4月6日
A dataset of rodent cerebrovasculature from in vivo multiphoton fluorescence microscopy imaging

Charissa Poon, Petteri Teikari, Muhammad Febrian Rachmadi, Henrik Skibbe, Kullervo Hynynen

Scientific Data 10(1) 2023年3月
Where Position Matters—Deep-Learning–Driven Normalization and Coregistration of Computed Tomography in the Postoperative Analysis of Deep Brain Stimulation

Marco Reisert, Bastian E.A. Sajonz, Timo S. Brugger, Peter C. Reinacher, Maximilian F. Russe, Elias Kellner, Henrik Skibbe, Volker A. Coenen

Neuromodulation 26(2) 302-309 2023年2月
Improving Segmentation of Objects with Varying Sizes in Biomedical Images using Instance-wise and Center-of-Instance Segmentation Loss Function

Muhammad Febrian Rachmadi, Charissa Poon, Henrik Skibbe

Proceedings of Machine Learning Research 227 286-300 2023年
An Automated Pipeline to Create an Atlas of in Situ Hybridization Gene Expression Data in the Adult Marmoset Brain

Charissa Poon, Muhammad Febrian Rachmadi, Michal Byra, Matthias Schlachter, Binbin Xu, Tomomi Shimogori, Henrik Skibbe

Proceedings - International Symposium on Biomedical Imaging 2023-April 2023年
Implicit Neural Representations for Joint Decomposition and Registration of Gene Expression Images in the Marmoset Brain

Michal Byra, Charissa Poon, Tomomi Shimogori, Henrik Skibbe

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 14229 LNCS 645-654 2023年
A Spiking Neural Network Builder for Systematic Data-to-Model Workflow

Carlos Enrique Gutierrez, Henrik Skibbe, Hugo Musset, Kenji Doya

Frontiers in Neuroinformatics 16 2022年7月13日

もっとみる

MISC

マーモセット前頭前野からの皮質間および,皮質線条体投射が示す2つの対照的な特徴について

渡我部昭哉, SKIBBE Henrik, 中江健, 阿部央, 一戸紀孝, WANG Jian, 高司雅史, 水上浩明, WOODWARD Alexander, GONG Rui …

日本神経化学会大会抄録集(Web) 65th 2022年
MarmoNet: a pipeline for automated projection mapping of the common marmoset brain from whole-brain serial two-photon tomography

H. Skibbe, A. Watakabe, K. Nakae, C.E. Gutierrez, H. Tsukada, J.K.T. Hata, R. Gong, A. Woodward, K. Doya, H. Okano …

https://arxiv.org/abs/1908.00876 abs/1908.00876 2019年8月2日
マーモセット前頭前皮質の連結性マッピングのための完全自動化データ処理法

SKIBBE Henrik, WATAKABE Akiya, NAKAE Ken, GUTIERREZ Carlos Enrique, WOODWARD Alexander, TSUKADA Hiromichi, GONG Rui, HATA Junichi, HATA Junichi, DOYA Kenji …

日本神経化学会大会抄録集(Web) 62nd 2019年
HAMLET: Hierarchical Harmonic Filters for Learning Tracts from Diffusion MRI

Marco Reisert, Volker A. Coenen, Christoph Kaller, Karl Egger, Henrik Skibbe

2018年7月3日
ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains (vol 9, pg 735, 2012)

Olaf Ronneberger, Kun Liu, Meta Rath, Dominik Ruess, Thomas Mueller, Henrik Skibbe, Benjamin Drayer, Thorsten Schmidt, Alida Filippi, Roland Nitschke …

NATURE METHODS 9(10) 1031-1031 2012年10月
Left-Invariant Diffusion on the Motion Group in terms of the Irreducible Representations of SO(3)

Marco Reisert, Henrik Skibbe

2012年2月24日

共同研究・競争的資金等の研究課題

神経ネットワーク顕微鏡画像の生成と分析のための深層学習手法の開発

日本学術振興会科学研究費助成事業特別研究員奨励費 2023年11月 - 2026年3月

Skibbe Henrik, DECROOCQ MEGHANE

SKIBBE Henrik

基本情報

研究分野

論文

MISC

共同研究・競争的資金等の研究課題

メニュー

共著者の一覧