Hideaki Ogata

Profile Information

Affiliation: Professor, Graduate School of Science, University of Hyogo

Degree: Ph.D.(Kyoto University)

Researcher number: 30795935
ORCID ID: https://orcid.org/0000-0002-2894-2417
J-GLOBAL ID: 201701006048438970
Researcher ID: J-4975-2013
researchmap Member ID: B000274859

Research Interests

Research Areas

Research History

Apr, 2022 - Present

Professor, Graduate School of Science, University of Hyogo
Oct, 2021 - Mar, 2022

Nara Institute of Science and Technology
Apr, 2017 - Sep, 2021

Institute of Low Temperature Science, Hokkaido University
Jul, 2012 - Mar, 2017

Group Leader, Max Planck Institute for Chemical Energy Conversion
Feb, 2011 - Jun, 2012

Group Leader, Max Planck Institute for Bioinorganic Chemistry
Nov, 2006 - Jan, 2011

Senior Researcher, Max Planck Institute for Bioinorganic Chemistry
Nov, 2003 - Oct, 2006

Postdoc, Max Planck Institute for Bioinorganic Chemistry
Apr, 2003 - Oct, 2003

Postdoc, Himeji Institute of Technology

Education

- 2003

Graduate School of Science, Kyoto University
- 1998

Faculty of Science, Kyoto University

Awards

Nov, 2020

The Crystallographic Society of Japan, Academic award, The Crystallographic Society of Japan

Hideaki Ogata

Papers

Structural Studies of the Flavin-Based Electron Bifurcating Enzymes

Hideaki OGATA

Nihon Kessho Gakkaishi, 65(4) 220-221, Dec 15, 2023 Peer-reviewedInvitedLead authorCorresponding author
Structural and thermodynamic insights into antibody light chain tetramer formation through 3D domain swapping.

Takahiro Sakai, Tsuyoshi Mashima, Naoya Kobayashi, Hideaki Ogata, Lian Duan, Ryo Fujiki, Kowit Hengphasatporn, Taizo Uda, Yasuteru Shigeta, Emi Hifumi …

Nature communications, 14(1) 7807-7807, Dec 8, 2023 Peer-reviewed
Structure and function relationship of formate dehydrogenases: an overview of recent progress

Ami Kobayashi, Midori Taketa, Keisei Sowa, Kenji Kano, Yoshiki Higuchi, Hideaki Ogata

IUCrJ, 10(5) 544-554, Sep 1, 2023 Peer-reviewed
New insights into the oxidation process from neutron and X-ray crystal structures of an O₂-sensitive [NiFe]-hydrogenase

Takeshi Hiromoto, Koji Nishikawa, Seiya Inoue, Hideaki Ogata, Yuta Hori, Katsuhiro Kusaka, Yu Hirano, Kazuo Kurihara, Yasuteru Shigeta, Taro Tamada …

Chemical Science, 14(35) 9306-9315, 2023 Peer-reviewed
Redox tuning of the H-cluster by second coordination sphere amino acids in the sensory [FeFe] hydrogenase from Thermotoga maritima

Nipa Chongdar, Patricia Rodríguez-Maciá, Edward J. Reijerse, Wolfgang Lubitz, Hideaki Ogata, James A. Birrell

Chemical Science, 14(13) 3682-3692, 2023 Peer-reviewedCorresponding author
Structural insight on the mechanism of an electron-bifurcating [FeFe] hydrogenase

Chris Furlan, Nipa Chongdar, Pooja Gupta, Wolfgang Lubitz, Hideaki Ogata, James N Blaza, James A Birrell

eLife, 11 e79361, Aug 26, 2022 Peer-reviewed
Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase

Sven T. Stripp, Benjamin R. Duffus, Vincent Fourmond, Christophe Léger, Silke Leimkühler, Shun Hirota, Yilin Hu, Andrew Jasniewski, Hideaki Ogata, Markus W. Ribbe

Chemical Reviews, 122(14) 11900-11973, Jul 27, 2022 Peer-reviewed
Structural and spectroscopic characterization of CO inhibition of [NiFe]-hydrogenase from Citrobacter sp. S-77

Takahiro Imanishi, Koji Nishikawa, Midori Taketa, Katsuhiro Higuchi, Hulin Tai, Shun Hirota, Hironobu Hojo, Toru Kawakami, Kiriko Hataguchi, Kayoko Matsumoto …

Acta Crystallographica Section F Structural Biology Communications, 78(2) 66-74, Feb 1, 2022 Peer-reviewed
Structural & Chemical Study of Metalloenzymes: Reaction Mechanism of Hydrogenases

Hideaki Ogata

63(2) 97-104, Jun, 2021 Peer-reviewedInvitedLead authorCorresponding author
Spectroscopic and biochemical insight into an electron bifurcating [FeFe] hydrogenase

N. Chongdar, K. Pawlak, O. Rüdiger, E. J. Reijerse, P. Rodríguez-Maciá, W. Lubitz, J. A. Birrell, H. Ogata

Journal of Biological Inorganic Chemistry, 25(1) 135-149, Feb, 2020 Peer-reviewedLast authorCorresponding author
Structural basis of the function of [NiFe]-hydrogenases

Koji Nishikawa, Hideaki Ogata, Yoshiki Higuchi

Chemistry Letters, 49(2) 164-173, Feb, 2020 Peer-reviewedCorresponding author
Role of APS reductase in biogeochemical sulfur isotope fractionation.

Min Sub Sim, Hideaki Ogata, Wolfgang Lubitz, Jess F Adkins, Alex L Sessions, Victoria J Orphan, Shawn E McGlynn

Nature communications, 10(1) 44-44, Jan 9, 2019 Peer-reviewed
Electrostatic Tuning of the Ligand Binding Mechanism by Glu27 in Nitrophorin 7

Stefania Abbruzzetti, Alessandro Allegri, Axel Bidon-Chanal, Hideaki Ogata, Giancarlo Soavi, Giulio Cerullo, Stefano Bruno, Chiara Montali, F. Javier Luque, Cristiano Viappiani

Scientific Reports, 8(10855), Jul, 2018 Peer-reviewed
Unique Spectroscopic Properties of the H-Cluster in a Putative Sensory [FeFe] Hydrogenase

Nipa Chongdar, James A. Birrell, Krzysztof Pawlak, Constanze Sommer, Edward J. Reijerse, Olaf Rüdiger, Wolfgang Lubitz, Hideaki Ogata

Journal of the American Chemical Society, 140(3) 1057-1068, Jan 24, 2018 Peer-reviewedLast authorCorresponding author
Solvent water interactions within the active site of the membrane type I matrix metalloproteinase

Elena Decaneto, Tatiana Vasilevskaya, Yuri Kutin, Hideaki Ogata, Moran Grossman, Irit Sagi, Martina Havenith, Wolfgang Lubitz, Walter Thiel, Nicholas Cox

PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 19(45) 30316-30331, Dec, 2017 Peer-reviewedLead author
Observation of hydrogens in hydrogenase by X-ray crystallography and spectroscopy

Hideaki Ogata

Catalysts & Catalysis, 59(5) 274-278, Oct, 2017 InvitedCorresponding author
Nuclear Resonance Vibrational Spectroscopy for Observation of Fe-H/D Bending Modes in Hydrogenases and Nitrogenases

Stephen P. Cramer, Cindy Pham, Hongxin Wang, Nakul Mishra, Leland Gee, Yoshitaka Yoda, Thomas B. Rauchfuss, Vladimir Pelmenschikov, Hideaki Ogata, Edward J. Reijerse …

SPring-8/SACLA Information, 22(2) 104-109, May, 2017
Structural studies of matrix metalloproteinase by X-ray diffraction

Elena Decaneto, Wolfgang Lubitz, Hideaki Ogata

Methods in Molecular Biology, 1579 49-60, Jan, 2017 InvitedCorresponding author
Structure and function of [NiFe] hydrogenases

Hideaki Ogata, Wolfgang Lubitz, Yoshiki Higuchi

JOURNAL OF BIOCHEMISTRY, 160(5) 251-258, Nov, 2016 Peer-reviewedLead authorCorresponding author
Importance of Hydrogen Bonding in Fine Tuning the [2Fe-2S] Cluster Redox Potential of HydC from Thermotoga maritima

James A. Birrell, Christoph Laurich, Edward J. Reijerse, Hideaki Ogata, Wolfgang Lubitz

BIOCHEMISTRY, 55(31) 4344-4355, Aug, 2016 Peer-reviewed

Misc.

水素分解を伴う不活性酸化型[NiFe]ヒドロゲナーゼの再活性化

廣本武史, 西川幸志, 緒方英明, 樋口芳樹

日本結晶学会年会講演要旨集, 2018, 2018
Nuclear resonant vibrational spectroscopy in studying extremely weak features in hydrogenases and nitrogenases

Hongxin Wang, Stephen Cramer, Leland B. Gee, Aubrey D. Scott, Hideaki Ogata, Tobias Kraemer, Frank Neese, Wolfgang Lubitz, William Newton, Christie Dapper …

ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 248, Aug, 2014
Protein-solvent interaction and metal substitution of membrane type I matrix metalloproteinase

Elena Decaneto, Markus Knipp, Hideaki Ogata, Martina Havenith, Wolfgang Lubitz

JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 19 S849-S850, Aug, 2014
Nitrite dismutase - A "nitrite-only" source for NO

Markus Knipp, Chunmao He, Hideaki Ogata

NITRIC OXIDE-BIOLOGY AND CHEMISTRY, 31 S36-S36, Apr, 2013
Nitrite disproportionation reaction: Investigations on the mechanism of the conversion of nitrite into nitric oxide at the ferriheme center of nitrophorins at blood plasma pH

Markus Knipp, Chunmao He, Hideaki Ogata

NITRIC OXIDE-BIOLOGY AND CHEMISTRY, 24 S33-S34, May, 2011
Transition from Ni-B to Ni-A State in [NiFe]-Hydrogenase from D. vulgaris Miyazaki F and Their Structural Characterization

Hirota, S, Ogata, H, Nakahara, A, Komori, H, Shibata, N, Funasaki, N, Higuchi, Y

12th International Conference on Biological Chemistry, Apr 1, 2005
Role of the non-protein ligand at the Ni-Fe active site of [NiFe] hydrogenase

Ogata, H, Hirota, S, Nakahara, A, Komori, H, Shibata, N, Higuchi, Y

XX Congress of the International Union of Crystallography, Apr 1, 2005
2P087 Analysis of the interaction between cytochrome c_3 and its physiological partner [NiFe] hydrogenase

Yahata N, Takayama Y, Saitoh T, Ozawa K, Nakahara A, Ogata H, Higuchi Y, Akutsu H

Biophysics, 44(1) S131, Nov 10, 2004
［NiFe］ヒドロゲナーゼにおける2種の酸化型（Ni-A型とNi-B型）の構造化学的研究

中原明香, 緒方英明, 柴田直樹, 廣田俊, 樋口芳樹

理研構造生物ポスターセッション, Aug 4, 2003
Introduction of Ile residues to the membrane-bound hydrogenase from Ralstonia eutropha and analysis of the effect to protein stability

Fukuda Keiichi, Terashita Mami, Inoue Miho, Ogata Hideaki, Higuchi Yoshiki, Yoon Ki Seok, Nishihara Hirofumi

15 50-50, 2003
Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F

Hirota, S, Ogata, H, Mizoguchi, Y, Mizuno, N, Miki, K, Adachi, S, Yasuoka, N, Yagi, T, Yamauchi, O, Higuchi, Y

6th European Biological Inorganic Chemistry Conference, 61, Apr 1, 2002
New crystallographic and chemical insights into the activation of NiFe-hydrogenase by H-2

H Ogata, K Miki, N Yasuoka, T Yagi, Y Higuchi

JOURNAL OF INORGANIC BIOCHEMISTRY, 74(1-4) 31-31, Apr, 1999

Books and Other Publications

独立栄養微生物によるCO2資源化技術

西川幸志, 緒方英明 (Role: Contributor, 第II編第４章ヒドロゲナーゼの反応機構と産業利用に向けた構造化学)

シーエムシー出版, Dec, 2023 (ISBN: 9784781317564)
Encyclopedia of Biological Chemistry 3rd Edition

Hideaki Ogata, Wolfgang Lubitz (Role: Contributor, Hydrogenases Structure and Function)

Elsevier, Aug, 2021
生命金属ダイナミクス（第4章第6節水素酸化還元酵素ヒドロゲナーゼ）

緒方英明, 樋口芳樹 (Role: Joint author, 水素酸化還元酵素ヒドロゲナーゼ)

NTS, Jan, 2021
Encyclopedia of Biological Chemistry 2nd edition (Hydrogenases, Structure and Function)

Wolfgang Lubitz, Hideaki Ogata (Role: Contributor, Hydrogenases, Structure and Function)

Elsevier Academic Press, Mar, 2013
Molecular Solar Fuels (Functional Features of hydrogenase enzymes)

Wolfgang Lubitz, Hideaki Ogata, Edward Reijerse, Yoshiki Higuchi (Role: Contributor, Functional Features of hydrogenase enzymes)

The Royal Society of Chemistry, 2012
バイオ電気化学の実際バイオセンサ・バイオ電池の実用展開 (ヒドロゲナーゼ)

緒方英明, 樋口芳樹 (Role: Contributor, ヒドロゲナーゼ)

CMC出版, 2007

Major Presentations

Spectroscopic characterization of a sensory [FeFe] hydrogenase

Hideaki Ogata

13th International Conference on Hydrogenases, Jun 27, 2023 Invited
Structure of an Electron-Bifurcating [FeFe] Hydrogenase

C. Furlan, N. Chongdar, P. Gupta, W. Lubitz, H. Ogata, J. N. Blaza, J. A. Birrell

10th Asian Biological Inorganic Chemistry Conference, Dec 2, 2022 Invited
金属酵素の結晶構造化学的研究

緒方英明

日本結晶学会令和2年度年会および会員総会70周年記念大会, Nov 27, 2020 Invited
Unique spectroscopic properties of a sensory [FeFe] hydrogenase

Hideaki Ogata

43rd International Conference on Coordination Chemistry, Aug 3, 2018 Invited
Catalytic reaction mechanism of [NiFe] hydrogenase

緒方英明

Gordon Research Conference, Enzymes, Coenzymes & Metabolic Pathways, Jul 26, 2016 Invited

Teaching Experience

Professional Memberships

Research Projects

Structural basis and reaction mechanism of [FeFe] hydrogenases

Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (B), Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2020 - Mar, 2023
Reaction mechanism of [FeFe] hydrogenases

Grants-in-Aid for Scientific Research Fund for the Promotion of Joint International Research (Returning Researcher Development Research), Fund for the Promotion of Joint International Research (Returning Researcher Development Research), Japan Society for the Promotion of Science, 2017 - 2019

Ogata Hideaki, Higuchi Yoshiki

Profile Information

Research Interests

Research Areas

Research History

Education

Awards

Papers

Misc.

Books and Other Publications

Major Presentations

Teaching Experience

Professional Memberships

Research Projects

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