Shotaro HIRASE

Profile Information

Affiliation: 助教, 東京大学水産実験所

Researcher number: 90635559
J-GLOBAL ID: 202001009595887279
researchmap Member ID: R000013981

Research Interests

Research Areas

Life sciences / Marine/Aquatic life sciences / 水圏遺伝生態学

Research History

Oct, 2015 - Present

Fisheries Laboratory, The University of Tokyo
Apr, 2015 - Sep, 2015

Japan Society for the Promotion of Science
Apr, 2012 - Mar, 2015

特任研究員, 地球表層圏変動研究センター生物遺伝子変動分野, 東京大学大気海洋研究所

Education

Apr, 2009 - Mar, 2012

Division of Biological Resource Sciences, Graduate School of Agricultural Science, Tohoku University
Apr, 2007 - Mar, 2009

Division of Biological Resource Sciences, Graduate School of Agricultural Science, Tohoku University
Apr, 2003 - Mar, 2007

Department of Applied Bio-Sciences, Faculty of Agriculture, Tohoku University

Committee Memberships

Oct, 2023 - Present

代議員, 日本魚類学会
Apr, 2023 - Present

編集委員, 日本水産学会
Apr, 2020 - Present

Molecular Ecology Resources, Associate Editor, John Wiley & Sons
Apr, 2018 - Present

Molecular Ecology, Associate Editor, John Wiley & Sons

Awards

Papers

Genomic landscape of introgression from the ghost lineage in a gobiid fish uncovers the generality of forces shaping hybrid genomes.

Shuya Kato, Seiji Arakaki, Atsushi J Nagano, Kiyoshi Kikuchi, Shotaro Hirase

Molecular ecology, Dec 4, 2023
Accumulation of gene copy number variations during the early phase of free-spawning abalone speciation.

Shotaro Hirase, Masashi Sekino, Motoyuki Hara, Kiyoshi Kikuchi

Ecology and evolution, 13(2) e9816, Feb, 2023
Assessing the effectiveness of DNA barcoding for exploring hidden genetic diversity in deep-sea fishes

Akinori Teramura, Keita Koeda, Ayumi Matsuo, Mitsuhiko P. Sato, Hiroshi Senou, Hsuan-Ching Ho, Yoshihisa Suyama, Kiyoshi Kikuchi, Shotaro Hirase

MARINE ECOLOGY PROGRESS SERIES, 701 83-98, Nov, 2022
Repeated translocation of a supergene underlying rapid sex chromosome turnover in Takifugu pufferfish.

Ahammad Kabir, Risa Ieda, Sho Hosoya, Daigaku Fujikawa, Kazufumi Atsumi, Shota Tajima, Aoi Nozawa, Takashi Koyama, Shotaro Hirase, Osamu Nakamura …

Proceedings of the National Academy of Sciences of the United States of America, 119(23) e2121469119, Jun 7, 2022
Genomic signatures for latitudinal selection in the tropical eel Anguilla marmorata.

Shotaro Hirase, Yusuke Kumai, Shuya Kato, Seishi Hagihara, Kiyoshi Kikuchi, Mari Kuroki

Journal of evolutionary biology, 35(5) 763-771, Mar 24, 2022
A preliminary deep-sea fish fauna list with new and northernmost records, in the continental shelf to the upper continental slope in the east Enshu-nada Sea, central Japan

Akinori Teramura, Hiroshi Kohno, Hiroshi Senou, Kiyoshi Kikuchi, Shotaro Hirase, Taiga Kunishima

Plankton and Benthos Research, 17(1) 95-99, Feb 22, 2022
Squalomix: shark and ray genome analysis consortium and its data sharing platform.

Osamu Nishimura, John Rozewicki, Kazuaki Yamaguchi, Kaori Tatsumi, Yuta Ohishi, Tazro Ohta, Masaru Yagura, Taiki Niwa, Chiharu Tanegashima, Akinori Teramura …

F1000Research, 11 1077-1077, 2022
Genomic evidence for speciation with gene flow in broadcast spawning marine invertebrates.

Shotaro Hirase, Yo Y Yamasaki, Masashi Sekino, Masato Nishisako, Minoru Ikeda, Motoyuki Hara, Juha Merilä, Kiyoshi Kikuchi

Molecular biology and evolution, 38(11) 4683-4699, Jul 26, 2021
Comparative phylogeography of coastal gobies in the Japanese Archipelago: future perspectives for the study of adaptive divergence and speciation

Shotaro Hirase

ICHTHYOLOGICAL RESEARCH, Jul, 2021
Integrative genomic phylogeography reveals signs of mitonuclear incompatibility in a natural hybrid goby population.

Shotaro Hirase, Ayumi Tezuka, Atsushi J Nagano, Mana Sato, Sho Hosoya, Kiyoshi Kikuchi, Wataru Iwasaki

Evolution, 75(1) 176-194, Nov 9, 2020
Sharing and reporting benefits from biodiversity research.

Emily Marden, Richard J Abbott, Frédéric Austerlitz, Daniel Ortiz-Barrientos, Regina S Baucom, Pim Bongaerts, Aurélie Bonin, Camille Bonneaud, Luke Browne, C Alex Buerkle …

Molecular Ecology, 30(5) 1103-1107, Nov 6, 2020
Complex phylogeographic patterns in the intertidal gobyChaenogobius annularisaround Kyushu Island as a boundary zone of three different seas

Shuya Kato, Seiji Arakaki, Kiyoshi Kikuchi, Shotaro Hirase

ICHTHYOLOGICAL RESEARCH, Aug, 2020
Genetic isolation by distance in the yellowfin goby populations revealed by RAD sequencing

Shotaro Hirase, Ayumi Tezuka, Atsushi J. Nagano, Kiyoshi Kikuchi, Wataru Iwasaki

ICHTHYOLOGICAL RESEARCH, 67(1) 98-104, Jan, 2020
Genomic and phenotypic consequences of two independent secondary contact zones between allopatric lineages of the anadromous ice goby Leucopsarion petersii

Shotaro Hirase, Tomoyuki Kokita, Atsushi J. Nagano, Kiyoshi Kikuchi

HEREDITY, 124(1) 223-235, Jan, 2020
Random PCR-based genotyping by sequencing technology GRAS-Di (genotyping by random amplicon sequencing, direct) reveals genetic structure of mangrove fishes

Sho Hosoya, Shotaro Hirase, Kiyoshi Kikuchi, Kusuto Nanjo, Yohei Nakamura, Hiroyoshi Kohno, Mitsuhiko Sano

MOLECULAR ECOLOGY RESOURCES, 19(5) 1153-1163, Sep, 2019
First discovery of Perkinsus beihaiensis in Mediterranean mussels (Mytilus galloprovincialis) in Tokyo Bay, Japan

Naoki Itoh, Yoshiki Komatsua, Kazuki Maeda, Shotaro Hirase, Tomoyoshi Yoshinaga

JOURNAL OF INVERTEBRATE PATHOLOGY, 166 107226-107226, Sep, 2019
The Pliocene-Pleistocene transition had dual effects on north American migratory bird speciation (vol 462, pg 85, 2016)

Shotaro Hirase, Yusuke Yokoyama, Cin-Ty Lee, Wataru Iwasaki

PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY, 476 192-193, Jun, 2017
Phylogeography of the yellowfin goby Acanthogobius flavimanus in native and non-native distributions

Shotaro Hirase, Sherrie Chambers, Kathryn Hassell, Melissa Carew, Vincent Pettigrove, Kiyoshi Soyano, Masaki Nagae, Wataru Iwasaki

MARINE BIOLOGY, 164(5), May, 2017
The Pliocene-Pleistocene transition had dual effects on North American migratory bird speciation

Shotaro Hirase, Yusuke Yokoyama, Cin-Ty Lee, Wataru Iwasaki

PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY, 462 85-91, Nov, 2016
Stability of genetic diversity in an intertidal goby population after exposure to tsunami disturbance

Shotaro Hirase, Minoru Ikeda, Shun Hayasaka, Wataru Iwasaki, Akihiro Kijima

MARINE ECOLOGY-AN EVOLUTIONARY PERSPECTIVE, 37(5) 1161-1167, Oct, 2016

Misc.

野生水産生物における集団ゲノミクス：はじめに

池田実, 平瀬祥太朗, 菊池潔

日本水産学会誌, 90(2) 140-140, Mar, 2024
Comparative population genomics of Chaenogobius gulosus and C. annularis focusing on coastal Kyushu Island

加藤柊也, 新垣誠司, 永野惇, 菊池潔, 平瀬祥太朗

日本魚類学会年会講演要旨, 54th (CD-ROM), 2020
Local adaptation with gene flow in the Sea of Japan lineage of Leucopsarion petersii

平瀬祥太朗, 菊池潔, 永野惇, 小北智之

日本魚類学会年会講演要旨, 54th (CD-ROM), 2020
シロウオの五島集団の高い遺伝的固有性

佐藤耕平, 小北智之, 永野惇, 菊池潔, 平瀬祥太朗

日本水産学会大会講演要旨集, 2019, 2019
主成分分析による地域適応遺伝子の探索

平瀬祥太朗, 手塚あゆみ, 永野惇, 菊池潔, 岩崎渉

日本水産学会大会講演要旨集, 2018, 2018
RAD-seqによるシロウオ太平洋型と日本海型の交雑集団の遺伝解析

平瀬祥太朗, 小北智之, 永野惇, 菊池潔

日本水産学会大会講演要旨集, 2017, 2017
学部生に伝える研究最前線

大塚孝治, 平瀬祥太朗, 岩崎渉

東京大学理学系研究科・理学部ニュース, 48(2) 4-5, Jul 20, 2016
ミトコンドリア全ゲノム情報に基づく琵琶湖産魚類の高精度な人口学的歴史の推定

田畑諒一, 武島弘彦, 平瀬祥太朗, 西田睦, 渡辺勝敏

日本魚類学会年会講演要旨, 49th, 2016
更新世の日本海隔離で生じたアゴハゼ2グループの交雑帯のRAD-seq解析

平瀬祥太朗, 手塚あゆみ, 永野惇, 永野惇, 永野惇, 岩崎渉

日本生態学会大会講演要旨(Web), 63th, 2016
新たなゲノム構成を有する交雑集団の形成:アゴハゼのRAD-seq解析

平瀬祥太朗, 手塚あゆみ, 永野惇, 永野惇, 永野惇, 岩崎渉

日本進化学会大会プログラム・講演要旨集(Web), 18th, 2016
次世代シーケンシングによる魚類の大量ミトコンドリアゲノム分析法の確立

武島弘彦, 平瀬祥太朗, 岩崎渉, 田畑諒一, 渡辺勝敏, 西田睦

日本魚類学会年会講演要旨, 46th, 2013
琵琶湖固有魚類の起源と進化:ミトコンドリアゲノムにおける適応進化の可能性

田畑諒一, 武島弘彦, 平瀬祥太朗, 西田睦, 柿岡諒, 小宮竹史, 渡辺勝敏

日本魚類学会年会講演要旨, 46th, 2013

Research Projects

幻の「マダカアワビ」における種分化逆転仮説の検証

科学研究費助成事業基盤研究(C), 基盤研究(C), 日本学術振興会, Apr, 2023 - Mar, 2026

平瀬祥太朗
急速な進化を逆利用して水産生物の性決定遺伝子をとらえる

科学研究費助成事業基盤研究(A), 基盤研究(A), 日本学術振興会, Apr, 2022 - Mar, 2026

菊池潔, 小山喬, 細谷将, 竹内裕, 平瀬祥太朗
トゲウオ科魚類をモデルとした繁殖行動形質の適応的多様化のゲノム基盤

科学研究費助成事業基盤研究(B), 基盤研究(B), 日本学術振興会, Apr, 2021 - Mar, 2024

小北智之, 平瀬祥太朗
Genome evolution in novel hybrid populations

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2018 - Mar, 2021

Hirase Shotaro
Population genomics of western Pacific abalones

Grants-in-Aid for Scientific Research, Grant-in-Aid for Challenging Research (Exploratory), Japan Society for the Promotion of Science, Jun, 2017 - Mar, 2020

Hirase Shotaro
Large-scale genotyping technologies for fish genetic resource management

Grants-in-Aid for Scientific Research Grant-in-Aid for Challenging Exploratory Research, Grant-in-Aid for Challenging Exploratory Research, Japan Society for the Promotion of Science, Apr, 2016 - Mar, 2018

Kikuchi Kiyoshi, HOSOYA Sho, HIRASE Shotaro
Whether is genetic disturbance caused in coastal mraine species?: Genome-wide population genetics of the yellowfin goby

Grants-in-Aid for Scientific Research Grant-in-Aid for Young Scientists (B), Grant-in-Aid for Young Scientists (B), Japan Society for the Promotion of Science, Apr, 2014 - Mar, 2017

Hirase Shotaro
交雑によるゲノム不和合回避と適応進化の分子機構：アゴハゼの交雑集団をモデルとして

科学研究費助成事業特別研究員奨励費, 特別研究員奨励費, 日本学術振興会, Apr, 2015 - Mar, 2016

平瀬祥太朗

Profile Information

Research Interests

Research Areas

Research History

Education

Committee Memberships

Awards

Papers

Misc.

Research Projects

Menu

Coauthors