Hirohisa Kishino

Profile Information

Affiliation: Visiting Researcher, Research and Development Initiative, Chuo University

Degree: Ms. Science(Mar, 1980, The University of Tokyo)
Dr. Science(Mar, 1989, Kyushu University)

J-GLOBAL ID: 200901096143163461
researchmap Member ID: 1000011441

Research Interests

Research Areas

Research History

May, 2021 - Present

Research and Development Initiative, Chuo University
Apr, 2021 - Mar, 2022

Proefessor, The Research Institute of Evolutionary Biology
Apr, 1999 - Mar, 2021

Professor, Graduate School of Agricultural and Life Sciences, The University of Tokyo
Jul, 1993 - Mar, 1999

Associate professor, Graduate School of Arts and Sciences, The University of Tokyo
Dec, 1990 - Jun, 1993

Associate professor, The Ocean Research Institute, The University of Tokyo
1980 - 1990

文部省統計数理研究所助手

Education

- 1980

The University of Tokyo
- 1980

Graduate School, Division of Natural Science, The University of Tokyo
- 1978

Faculty of Science, The University of Tokyo
- 1978

Faculty of Science, The University of Tokyo

Committee Memberships

2005 - 2006

理事、評議員, 日本計量生物学会
2003 - 2004

編集委員, 日本育種学会
2003 - 2004

editorial board, Japanese Society of Breeding
1999 - 2004

director, Biometric Society of Japan
2000 - 2001

評議員, 日本応用統計学会
1994 - 1999

編集委員, 日本行動計量学会
1993 - 1994

理事, 日本統計学会

Awards

Mar, 2017

日本計量生物学会学会賞, 日本計量生物学会

岸野洋久
Aug, 2015

日本進化学会学会賞・木村賞, 日本進化学会・木村資生基金

岸野洋久
2002

優秀発表賞（ベストポスター賞：日本進化学会）
2000

The best paper award (Genome Informatic Workshop 2000)
1996

日本行動計量学会優秀賞

Papers

305

Towards molecular evolutionary epigenomics with an expanded nucleotide code involving methylated bases

Yoshida, S., Uchiyama, I., Fukuyo, M., Kato, M., Rao, D. N., Konno, M., Fujiwara, S., Azuma, T., Kobayashi, I., Kishino, H.

DNA Research, accepted, Sep, 2025 Peer-reviewedLast author
Hatcheries to high seas: climate change connections to salmon marine survival

Kitada, S., Myers, K. W., Kishino, H.

Ecology and Evolution, 15 e71504, May, 2025 Peer-reviewed
Genetic adaptations in the population history of Arabidopsis thaliana

Kishino, H, Nakamichi, R, Kitada, S

G3: Genes|Genomes|Genetics, 13(12), Sep, 2023 Peer-reviewed
Interlocus gene conversion, natural selection, and paralog homogenization

Yang, Y, Xu, T, Conant, G, Kishino, H, Thorne, J. L, Ji, X

Molecular Biology and Evolution, 40(9) msad198, Sep, 2023 Peer-reviewed
Massive loss of transcription factors promotes initial diversification of placental mammals. International Journal of Molecular Sciences

Zhao, X-W, Wu, J, Kishino, H, Chen, L

International Journal of Molecular Sciences, 23 9720, Aug, 2022 Peer-reviewed
Molecular evolutionary rate predicts intraspecific genetic polymorphism and species-specific selection

Wu, J, Yonezawa, T, Kishino, H

Genes, 13 708, Apr, 2022 Peer-reviewedLast authorCorresponding author
Exploratory analysis of multi-trait coadaptations in the light of population history

Nakamichi, R, Kitada, S, Kishino, H

Ecology and Evolution, 12: e8755, Feb, 2022 Peer-reviewedLast authorCorresponding author
Forward variable selection improves the power of random forest for high-dimensional microbiome data

Dang, T. T, Kishino, H

Journal of Cancer Science and Clinical Therapeutics, 6 87-105, Feb, 2022 Peer-reviewedLast author
An R script for unbiased estimation of stocking effectiveness using a two-stage sampling strategy based on fishery landings

Kitada, S, Kishino, H

Fisheries Research, 250 106266, Feb, 2022 Peer-reviewedLast author
Population structure of chum salmon and selection on the markers collected for stock identification

Kitada, S, Kishino, H

Ecology and Evolution, 11 13972-13985, Oct, 2021 Peer-reviewedLast author
Understanding population structure in an evolutionary context: population-specific FST and pairwise FST

Kitada, S, Nakamichi, R, Kishino, H

G3: Genes|Genomes|Genetics, 11.(11) jkab316, Oct, 2021 Peer-reviewedLast author
Evolution of reproductive life history in mammals and the associated change of functional constraints

Wu, J, Yonezawa, T, Kishino, H

Genes, 12(740), May, 2021 Peer-reviewedLast author
Waves out of the Korean Peninsula and inter- and intra-species replacements in freshwater fishes in Japan

Taniguchi, S, Bertl, J, Futschik, A, Kishino, H, Okazaki, T

Genes, 12(303), Feb, 2021
Multiple isolated transcription factors act as switches and contribute to species uniqueness

Zhao, X-W, Kishino, H

Genes, 11(1148), Sep, 2020 Peer-reviewedLast author
Renormalized basal metabolic rate describes the human aging process and longevity.

Yasuhiro Kitazoe, Hirohisa Kishino, Kumpei Tanisawa, Keiko Udaka, Masashi Tanaka

Aging cell, 18(4) e12968, Aug, 2019 Peer-reviewed
Stochastic variational inference for Bayesian phylogenetics: A case of CAT model

Dang, T. T, Kishino, H

Molecular Biology and Evolution, 36(4) 825-833, Apr, 2019 Peer-reviewed
Rigorous monitoring of a large-scale marine stock enhancement program demonstrates the need for comprehensive management of fisheries and nursery habitat.

Kitada, S, Nakajima, K, Hamasaki, K, Shishidou, H, Waples, R, Kishino, H

Scientific Reports, 9:5290, 2019 Peer-reviewed
Comparative analysis of farmers engaged in participatory research to cope with climate change versus non-participants in Northeast Thailand.

Suwanmontri,P, Kamoshita,A, Jongdee, B, Fukai, S, Kishino, H

Plant Production Science, 21 287-301, Jul, 2018 Peer-reviewed
Tree evaluation and robustness testing

Mahendra Mariadassou, Avner Bar-Hen, Hirohisa Kishino

Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics, 1-3 736-745, Jan 1, 2018
A new approach for comprehensively describing heterogametic sex chromosomes.

Li, S, Ajimura, M, Chen, Z, Liu, J, Chen, E, Guo, H, Tadapatri, V, Reddy, C. G, Zhang, J, Kishino, H …

DNA Research, 25 375-382, 2018 Peer-reviewed

Misc.

表現型進化と分子進化の統計モデル (特集確率論の力 : 様々な問題を通してみるその姿)

岸野洋久

数理科学, 55(10) 43-50, Oct, 2017
Spatiotemporal distribution of selection pressure on the influenza hemagglutinin protein

Teruaki Watabe, Hirohisa Kishino

GENES & GENETIC SYSTEMS, 89(6) 292-292, Dec, 2014 Peer-reviewed
SB4-4 温熱環境や社会環境依存的な霊長類心理リズム発達(特別セッションヒトの精神・情動・心理行動の医学、薬学、生物学的基盤を解き開く「動物モデル」と「発達」)

狩野源太, 岸野洋久, 國方徹也, 山内秀雄, 中村俊, 小柴満美子

日本行動計量学会大会発表論文抄録集, 42 264-265, Sep 2, 2014
SB4-5 スマートフォンセンサを用いた作業者の心理行動解析(特別セッションヒトの精神・情動・心理行動の医学、薬学、生物学的基盤を解き開く「動物モデル」と「発達」)

三村喬生, 岸野洋久, 中村俊, 小柴満美子

日本行動計量学会大会発表論文抄録集, 42 266-267, Sep 2, 2014
SB4-6 抗重力行動発達と新生児脳MRI・血液学相関「食育+社会療育」モデル : ヒト胎児-乳児発達の臨床情報分析と情育支援動物モデルの提言(特別セッションヒトの精神・情動・心理行動の医学、薬学、生物学的基盤を解き開く「動物モデル」と「発達」)

小柴満美子, 筧紘子, 本多正和, 狩野源太, 三村喬生, 岸野洋久, 國方徹也, 山内秀雄

日本行動計量学会大会発表論文抄録集, 42 268-269, Sep 2, 2014
A novel method to identify key factors of the gene regulatory network behind salmonids reproductive behavior using directed graphical modeling

Nakamichi R, Kishino H, Kitada S

North Pacific Anadromous Fish Commission Technical Report, 9 50-53, 2013
Adaptive evolution of viral genome analysis of the fitness landscape of a virus based on the protein structure

Teruaki Watabe, Hirohisa Kishino

Seibutsu Butsuri, 52(3) 146-147, Jun, 2012 Peer-reviewedInvited
分子進化と確率モデル (特集現代数学はいかに使われているか(確率編))

岸野洋久

数理科学, 48(4) 26-31, Apr, 2010
Modeling Evolution of Genotypes and Phenotypes

56(1) 55-66, Jun, 2008
Bayesian Divergence Time Estimation Using Codon Model

Thorne Jeffrey L.

56(1) 37-54, Jun, 2008
遺伝的モニタリングと動態予測

岸野洋久

数学セミナー, 第46巻(2号) 28-32, 2007
視点の異なる4枚組刺激呈示による庭景観評定 : 日英独伊の個人宅の庭風景(第10回大会発表論文)

山下雅子, 羽生和紀, 安達めぐみ, 堀田真一, 大森宏, 岸野洋久, 斎尾乾二郎

MERA Journal=人間・環境学会誌, 9(1) 51-51, Dec 26, 2005
Divergence pattern of duplicate genes in protein-protein interactions follows the power law (vol 22, pg 501, 2005)

Z Zhang, ZW Luo, H Kishino, MJ Kearsey

MOLECULAR BIOLOGY AND EVOLUTION, 22(4) 1156-1156, Apr, 2005
Multidimensional vector space representation for convergent evolution and molecular phylogeny (vol 22, pg 704, 2005)

Y Kitazoe, H Kishino, T Okabayashi, T Watabe, N Nakajima, Y Okuhara, Y Kurihara

MOLECULAR BIOLOGY AND EVOLUTION, 22(4) 1159-1159, Apr, 2005
(33) Positive Selection Pressure on the Phytoplasmal lmmunodominant Membrane Protein (Abstracts Presented at the Meeting of the Kanto Division) (Abstracts of Papers Presented at the Division Meetings of the Phytopathological Society of Japan, 2003)

Kakizawa S, Oshima K, Suzuki S, Nishigawa H, Ugaki M, Kishino H, Namba S

Annals of the Phytopathological Society of Japan, 70(1) 42-42, Feb 25, 2004
G1-4 花壇に対する好みの解析(一般セッション(G1) : 尺度構成)(第30回日本行動計量学会大会発表一覧)

大森宏, 安達めぐみ, 堀田真一, 宮口聡明, 山下雅子, 羽生和紀, 岸野洋久, 林知己夫

行動計量学, 30(2) 224-224, Jan 30, 2004
花き市場調査における花壇作成ソフトウェアの利用研究作成された花壇画像の日独比較

安達めぐみ, 大森宏, 斎藤正春, 堀田真一, 宮口聡明, 山下雅子, 羽生和紀, 岸野洋久, 林知己夫

園芸学会雑誌別冊, 71(2) 442-442, Oct 13, 2002
日英独伊の庭景観に対する国弁別

大森宏, 安達めぐみ, 堀田真一, 山下雅子, 羽生和紀, 岸野洋久, 林知己夫

統計関連学会連合大会講演報告集, 2002 340-341-341, Sep 1, 2002
花壇に対する好みの解析(尺度構成)

大森宏, 安達めぐみ, 堀田真一, 宮口聡明, 山下雅子, 羽生和紀, 岸野洋久, 林知己夫

日本行動計量学会大会発表論文抄録集, 30 12-13, Aug, 2002
D-1 日英独伊の庭景観に対する国弁別

大森宏, 安達めぐみ, 堀田真一, 山下雅子, 羽生和紀, 岸野洋久, 林知己夫

日本統計学会誌, 32(3) 371-371, 2002

Books and Other Publications

バイオインフォマティクス–基礎から応用

門田幸二, 清水謙多郎, 岸野洋久, 寺田透編, 門田幸二, 清水謙多郎, 大島研郎, 寺田透, 有田正則, 岸野洋久, 北田修一, 中道礼一郎, 米澤隆弘, 大森良弘著 (Role: Editor, ６章生物配列統計学, 6.1 種の多様性と分子進化, 6.6 分子系統樹)

培風館, Oct, 2022
生産環境統計学

岸野洋久編、岸野洋久、櫻井玄、井澤毅、二宮正士、北田修一、宮下脩平著 (Role: Editor, 序章)

朝倉書店, Mar, 2022
Encyclopedia of Bioinformatics and Computational Biology

Mariadassou, M, Bar-Hen, A, Kishino, H (Role: Contributor, Tree Evaluation and Robustness Testing)

Academic Press, 2019
ベイズ統計分析ハンドブック(Bayesian Thinking: Modeling and Computation)．（繁桝算男、岸野洋久、大森裕浩（監訳） (edited by D. K. Dey and C. R. Rao)）．

朝倉書店, 2011
分子進化の統計科学．（21 世紀の統計科学II：自然・生物・健康の統計科学（小西貞則・国友直人編））（岸野洋久）．

東京大学出版会, 2008
エコゲノム・プロジェクトに寄与する理論．（サクラソウの分子遺伝生態学（鷲谷いづみ編））（岸野洋久・中道礼一郎・吹田正治）

東京大学出版会, 2006
ゲノム進化の読解法（岸野洋久）

岩波書店, 2006
進化系統樹のモデルヴァリデーション．（モデルヴァリデーション（北川源四郎・岸野洋久・樋口知之・山下智志・川崎能典）)

共立出版（岸野洋久）, 2005
Statistical Methods in Molecular Evolution

Thorne, J. L, Kishino, H (Role: Contributor, Estimation of divergence times from molecular sequence data. In “Statistical Methods In Molecular Evolution” (Nielsen, R. ed.).)

Springer-Verlag, 2005
人生の出来事と記憶：データの質的・量的側面の活かし方．（社会への知・現代社会学の理論と方法(下)経験知の現在（盛山和夫・土場学・野宮大志郎・織田輝哉編））（高橋正樹・岸野洋久）

勁草書房, 2005
Estimation of divergence times from molecular sequence data. In “Statistical Methods In Molecular Evolution” (Nielsen, R. ed.).

Springer-Verlag(Thorne, J. L. and Kishino, H.), 2005
ゲノム進化と変異の解析.（生物配列の統計（岸野洋久・浅井潔））

岩波書店（岸野洋久）, 2003
複雑現象を量る：紙リサイクル社会の調査（羽生和紀・岸野洋久）

朝倉書店, 2001
生のデータを料理する：統計科学の調査とモデル化（増補版）（岸野洋久）

日本評論社, 2001
生のデータを料理する：統計科学における調査とモデル化（岸野洋久）

日本評論社, 1999
お年寄りの健康と人とのふれあい．（共分散構造分析［事例編］（豊田秀樹編））（岡林秀樹・杉澤秀博・岸野洋久）

北大路書房, 1998
ゲノムから生物の系統進化を推定する．（ゲノム情報を読む（宮田隆・五條堀孝編））

共立出版, 1997
分子系統学（長谷川政美・岸野洋久）

岩波書店, 1996
これからの沿岸漁家経営の方向性（岸野洋久編）

東京水産振興会, 1995
調査データと統計モデル．（水産資源解析と統計モデル（松宮義晴編））

恒星社厚生閣（岸野洋久），, 1993

Professional Memberships

Works

Research Projects

トランスクリプトーム遺伝適応の人類史世界地図のデータベースの構築

科学研究費助成事業, 基盤研究(C), 日本学術振興会, Apr, 2025 - Mar, 2028

岸野洋久
GWAS, ゲノム, (古)環境に基づく多形質共適応・共進化マップの構築

科学研究費助成事業, 基盤研究(C), 日本学術振興会, Apr, 2022 - Mar, 2025

岸野洋久, 呉佳齊, 中道礼一郎, 米澤隆弘
Statistical modeling of genetic background behind species-population-individual level diversity

Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (B), Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2019 - Mar, 2022

Kishino Hirohisa
Development of high-resolution inference procedure in molecular biogeography

Grant-in-Aid for Scientific Research, JSPS, Apr, 2016 - Mar, 2019

KISHINO Hirohisa
Development of a graphical model and a tolerance region for the assessment of physiological process and ecological diversity

Grant-in-Aid for Scientific Research, JSPS, Apr, 2013 - Mar, 2016

KISHINO Hirohisa
Establishment of monitoring method of insect sound communication using Wavelet

Grants-in-Aid for Scientific Research, Grant-in-Aid for Challenging Exploratory Research, Japan Society for the Promotion of Science, Apr, 2013 - Mar, 2015

TATSUTA Haruki, KUMANO Norikuni, SASAKI Takeshi, TAKANASHI Takuma, KISHINO Hirohisa, WATANABE Kakeru, YOKOKURA Ryo
Spatial distribution of selection pressure on a protein deriving its adaptation to the environment based on the hierarchical Bayesian model

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (C), Japan Society for the Promotion of Science, Apr, 2012 - Mar, 2015

WATABE Teruaki, KISHINO Hirohisa
Development of models in statistical genetics with spatio-temporal priors

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), JSPS, Apr, 2010 - Mar, 2013

KISHINO Hirohisa
Empirical evaluation of genetic impacts of aquaculture and stock enhancement on wild populations based on the latest data science

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, 2010 - 2012

KITADA Shuichi, KISHINO Hirohisa, HAMASAKI Katsuyuki, KITAKADO Toshihide
The fitness landscape of a virus inferred based on a mathematical model of the population dynamics

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (C), Japan Society for the Promotion of Science, 2008 - 2010

WATABE Teruaki, KISHINO Hirohis
On a comprehensive research on statistical modelling and analysis for spatio-temporal data

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (A), Japan Society for the Promotion of Science, 2007 - 2010

YAJIMA Yoshihiro, MASE Shigeru, SHIMIZU Kunio, NISHII Ryuei, KISHINO Hirohisa, KURIHARA Kouji, YOSHIDA Atsushi, KUBOKAWA Tatsuya, FUKUCHI Jun=ichiro, NAGAI Keiji, NISHIYAMA Yoshihiko, MATSUDA Yasumasa, MARUYAMA Yuzo, TAKAHASHI Kunihiko, OGATA Yoshihiko
Statistical genetic modelling of the emergence and dynamics of resistant alleles

Grant-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), JSPS, Apr, 2007 - Mar, 2009

KISHINO Hirohisa
Studies on population structures and their statistical modeling

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (C), Japan Society for the Promotion of Science, 2007 - 2009

KITAKADO Toshihide, KITADA Shuichi
Comparative Genomics Toward Understanding Genomic Bases of Evolution and Bio-Diversity : Support Groups

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research on Priority Areas, Japan Society for the Promotion of Science, 2005 - 2009

FUJIYAMA Asao, HORI Hiroshi, KISHINO Hirohisa, ENDO Hideki, ISHIDA Takafumi, KUROKI Yoko, TOYODA Atsushi, KUHARA Satoshi, KASAHARA Masahiro, SUZUKI Yutaka
Evaluating genetic invasion of exotic species and conservation of native species : a case study of Japanese short-neck clam

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, 2006 - 2008

KITADA Shuichi, KISHINO Hirohisa, HAMASAKI Katsuyuki, KITAKADO Toshihide
Development of Bayesian hierarchical models of genetic diversity and adaptive evolution of micro-organisms in the extreme environments

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, 2004 - 2006

KISHINO Hirohisa, TAE-KUN Eo, KITAZOE Yasuhiro, WATABE Teruaki
Can hatchery releases simultaneously recover stock sizes and genetic diversity of fishery resources?

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, 2003 - 2005

KITADA Shuichi, KISHINO Hirohisa
Survey on the Social Needs for Statistics and Improvement in Statistical Education in Universities

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, 2002 - 2005

MURAKAMI Masakatsu, SUGIYAMA Takakazu, KONISHI Sadanori, SATO Yoshiharu, KAGEYAMA Sanpei, SHIMIZU Kunio
Development of hierarchical models and procedures of genome evolution and mapping

BIRD, JST, Oct, 2001 - Sep, 2004

KISHINO Hirohisa
Development of survey procedure and analysis for conservation genetics

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (A), JSPS, Apr, 2001 - Mar, 2004

KISHINO Hirohisa

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Misc.

Books and Other Publications

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