Jun Mashima

J-GLOBAL         Last updated: Jan 16, 2019 at 13:39
 
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Name
Jun Mashima
Nickname
jmashima
URL
http://www.ddbj.nig.ac.jp/
Affiliation
National Institute of Genetics
Section
DNA Data Bank of Japan
Degree
Ph. D (Science)(University of Tsukuba)

Profile

Chief Annotator
DNA Data Bank of Japan
DDBJ Center
National Institute of Genetics

Research Areas

 
 

Academic & Professional Experience

 
Apr 2009
 - 
Today
Postdoctral Research Fellow, DNA Data Bank of Japan, National Institute of Genetics
 
Aug 1999
 - 
Mar 2009
Researcher, Association for Propagation of the Knowledge of Genetics
 
Jun 1997
 - 
Jul 1999
Visiting Researcher, School of Life Sciences, Tokyo University of Pharmacy and Life Sciences
 

Education

 
Apr 1992
 - 
Mar 1997
Doctoral Program in Biological Sciences, University of Tsukuba Graduate School of Life Sciences
 
Apr 1988
 - 
Mar 1992
College of Biological Sciences, University of Tsukuba
 

Published Papers

 
Yuichi Kodama, Jun Mashima, Takehide Kosuge, Osamu Ogasawara
Nucleic Acids Research   47(D1) D69-D73   Jan 2019   [Refereed][Invited]
Yuichi Kodama, Jun Mashima, Takehide Kosuge, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi
Nucleic Acids Research   46(D1) D30-D35   Jan 2018   [Refereed]
The DNA Data Bank of Japan (DDBJ) Center (http://www.ddbj.nig.ac.jp) has been providing public data services for 30 years since 1987. We are collecting nucleotide sequence data and associated biological information from researchers as a member of ...
Methods for analyzing next-generation sequencing data X. Registration to DDBJ through Mass Submission System
Yasuhiro Tanizawa, Takatomo Fujisawa, Jun Mashima, Kyungbum Lee, Masanori Tohno, Mitsuo Sakamoto, Moriya Ohkuma, Yasukazu Nakamura, Kentaro Shimizu, Koji Kadota
Japanese Journal of Lactic Acid Bacteria   28(2) 94-100   Jul 2017
Yasuhiro Tanizawa, Jun Mashima, Takatomo Fujisawa, Kyungbum Lee, Yasukazu Nakamura, Kentaro Shimizu, Koji Kadota
Japanese Journal of Lactic Acid Bacteria   28(1) 3-11   Mar 2017
Jun Mashima, Yuichi Kodama, Takatomo Fujisawa, Toshiaki Katayama, Yoshihiro Okuda, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi
Nucleic Acids Research   45(D1) D25-D31   Jan 2017   [Refereed]
The DNA Data Bank of Japan (DDBJ) (http://www.ddbj.nig.ac.jp) has been providing public data services for thirty years (since 1987). We are collecting nucleotide sequence data from researchers as a member of the International Nucleotide Sequence D...
Jun Mashima, Yuichi Kodama, Takehide Kosuge, Takatomo Fujisawa, Toshiaki Katayama, Hideki Nagasaki, Yoshihiro Okuda, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura and Toshihisa Takagi
Nucleic Acids Research   44(D1) D51-D57   Jan 2016   [Refereed]
Kodama Y, Mashima J, Kosuge T, Katayama T, Fujisawa T, Kaminuma E, Ogasawara O, Okubo K, Takagi T, Nakamura Y.
Nucleic Acids Research   43(D1) D18-D22   Jan 2015   [Refereed]
Kosuge T, Mashima J, Kodama Y, Fujisawa T, Kaminuma E, Ogasawara O, Okubo K, Takagi T, Nakamura Y
Nucleic acids research   42 D44-9   Jan 2014   [Refereed]
Federhen S, Clark K, Barrett T, Ostell J, Parkinson H, Kodama Y, Mashima J, Nakamura Y, Cochrane G, Karsch-mizrachi I,
Standards in Genomic Sciences   9(3)    Jan 2014   [Refereed]
Ogasawara O, Mashima J, Kodama Y, Kaminuma E, Nakamura Y, Okubo K, Takagi T
Nucleic acids research   41 D25-9   Jan 2013   [Refereed]
Kodama Y, Mashima J, Kaminuma E, Gojobori T, Ogasawara O, Takagi T, Okubo K, Nakamura Y
Nucleic acids research   40 D38-42   Jan 2012   [Refereed]
Kaminuma E, Kosuge T, Kodama Y, Aono H, Mashima J, Gojobori T, Sugawara H, Ogasawara O, Takagi T, Okubo K, Nakamura Y
Nucleic acids research   39 D22-7   Jan 2011   [Refereed]
Kaminuma E, Mashima J, Kodama Y, Gojobori T, Ogasawara O, Okubo K, Takagi T, Nakamura Y
Nucleic acids research   38 D33-8   Jan 2010   [Refereed]
Genome Information Integration Project And H-Invitational 2, Yamasaki C, Murakami K, Fujii Y, Sato Y, Harada E, Takeda J, Taniya T, Sakate R, Kikugawa S, Shimada M, Tanino M, Koyanagi KO, Barrero RA, Gough C, Chun HW, Habara T, Hanaoka H, Hayakawa Y, Hilton PB, Kaneko Y, Kanno M, Kawahara Y, Kawamura T, Matsuya A, Nagata N, Nishikata K, Noda AO, Nurimoto S, Saichi N, Sakai H, Sanbonmatsu R, Shiba R, Suzuki M, Takabayashi K, Takahashi A, Tamura T, Tanaka M, Tanaka S, Todokoro F, Yamaguchi K, Yamamoto N, Okido T, Mashima J, Hashizume A, Jin L, Lee KB, Lin YC, Nozaki A, Sakai K, Tada M, Miyazaki S, Makino T, Ohyanagi H, Osato N, Tanaka N, Suzuki Y, Ikeo K, Saitou N, Sugawara H, O'Donovan C, Kulikova T, Whitfield E, Halligan B, Shimoyama M, Twigger S, Yura K, Kimura K, Yasuda T, Nishikawa T, Akiyama Y, Motono C, Mukai Y, Nagasaki H, Suwa M, Horton P, Kikuno R, Ohara O, Lancet D, Eveno E, Graudens E, Imbeaud S, Debily MA, Hayashizaki Y, Amid C, Han M, Osanger A, Endo T, Thomas MA, Hirakawa M, Makalowski W, Nakao M, Kim NS, Yoo HS, De Souza SJ, Bonaldo Mde F, Niimura Y, Kuryshev V, Schupp I, Wiemann S, Bellgard M, Shionyu M, Jia L, Thierry-Mieg D, Thierry-Mieg J, Wagner L, Zhang Q, Go M, Minoshima S, Ohtsubo M, Hanada K, Tonellato P, Isogai T, Zhang J, Lenhard B, Kim S, Chen Z, Hinz U, Estreicher A, Nakai K, Makalowska I, Hide W, Tiffin N, Wilming L, Chakraborty R, Soares MB, Chiusano ML, Suzuki Y, Auffray C, Yamaguchi-Kabata Y, Itoh T, Hishiki T, Fukuchi S, Nishikawa K, Sugano S, Nomura N, Tateno Y, Imanishi T, Gojobori T
Nucleic acids research   36 D793-9   Jan 2008   [Refereed]
Kosuge T, Abe T, Okido T, Tanaka N, Hirahata M, Maruyama Y, Mashima J, Tomiki A, Kurokawa M, Himeno R, Fukuchi S, Miyazaki S, Gojobori T, Tateno Y, Sugawara H
DNA research : an international journal for rapid publication of reports on genes and genomes   13 245-254   Dec 2006   [Refereed]
Cochrane G, Bates K, Apweiler R, Tateno Y, Mashima J, Kosuge T, Mizrachi IK, Schafer S, Fetchko M
Omics : a journal of integrative biology   10 105-113   2006   [Refereed]
Imanishi T, Itoh T, Suzuki Y, O'Donovan C, Fukuchi S, Koyanagi KO, Barrero RA, Tamura T, Yamaguchi-Kabata Y, Tanino M, Yura K, Miyazaki S, Ikeo K, Homma K, Kasprzyk A, Nishikawa T, Hirakawa M, Thierry-Mieg J, Thierry-Mieg D, Ashurst J, Jia L, Nakao M, Thomas MA, Mulder N, Karavidopoulou Y, Jin L, Kim S, Yasuda T, Lenhard B, Eveno E, Suzuki Y, Yamasaki C, Takeda J, Gough C, Hilton P, Fujii Y, Sakai H, Tanaka S, Amid C, Bellgard M, Bonaldo Mde F, Bono H, Bromberg SK, Brookes AJ, Bruford E, Carninci P, Chelala C, Couillault C, de Souza SJ, Debily MA, Devignes MD, Dubchak I, Endo T, Estreicher A, Eyras E, Fukami-Kobayashi K, Gopinath GR, Graudens E, Hahn Y, Han M, Han ZG, Hanada K, Hanaoka H, Harada E, Hashimoto K, Hinz U, Hirai M, Hishiki T, Hopkinson I, Imbeaud S, Inoko H, Kanapin A, Kaneko Y, Kasukawa T, Kelso J, Kersey P, Kikuno R, Kimura K, Korn B, Kuryshev V, Makalowska I, Makino T, Mano S, Mariage-Samson R, Mashima J, Matsuda H, Mewes HW, Minoshima S, Nagai K, Nagasaki H, Nagata N, Nigam R, Ogasawara O, Ohara O, Ohtsubo M, Okada N, Okido T, Oota S, Ota M, Ota T, Otsuki T, Piatier-Tonneau D, Poustka A, Ren SX, Saitou N, Sakai K, Sakamoto S, Sakate R, Schupp I, Servant F, Sherry S, Shiba R, Shimizu N, Shimoyama M, Simpson AJ, Soares B, Steward C, Suwa M, Suzuki M, Takahashi A, Tamiya G, Tanaka H, Taylor T, Terwilliger JD, Unneberg P, Veeramachaneni V, Watanabe S, Wilming L, Yasuda N, Yoo HS, Stodolsky M, Makalowski W, Go M, Nakai K, Takagi T, Kanehisa M, Sakaki Y, Quackenbush J, Okazaki Y, Hayashizaki Y, Hide W, Chakraborty R, Nishikawa K, Sugawara H, Tateno Y, Chen Z, Oishi M, Tonellato P, Apweiler R, Okubo K, Wagner L, Wiemann S, Strausberg RL, Isogai T, Auffray C, Nomura N, Gojobori T, Sugano S
PLoS biology   2 e162   Jun 2004   [Refereed]
Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T, Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K, Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W, Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F, Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M, Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N, Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C, Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA, Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J, Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto N, Sasaki H, Sato K, Schönbach C, Seya T, Shibata Y, Storch KF, Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L, Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S, Hayashizaki Y, RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature   409 685-690   Feb 2001   [Refereed]
Mashima J, Nagahama M, Hatsuzawa K, Tani K, Horigome T, Yamamoto A, Tagaya M
Biochemical and biophysical research communications   274 559-564   Aug 2000   [Refereed]
[Molecular mechanisms of nuclear envelope assembly and disassembly].
Mashima J, Tagaya M
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme   44(12) 1935-1941   Sep 1999

Conference Activities & Talks

 
oYuichi Kodama, Osamu Ogasawara, Asami Fukuda, Jun Mashima, Mari T. Minowa, Minae Kawashima, Licht Toyo-oka, Nobutaka Mitsuhashi, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi and Masanori Arita
The American Society of Human Genetics 2018   18 Oct 2018   
Jun Mashima
Annotathon 2017   16 Nov 2017   
Controlled-access databases for genetic and phenotypic human data in Japan
oYuichi Kodama, Asami Nozaki, Jun Mashima, Mari T. Minowa, Minae Kawashima, Kazunori Miyazaki, Nobutaka Mitsuhashi, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi
The American Society of Human Genetics 2017   19 Oct 2017   
JGA: Japanese Genotype-phenotype ArchiveDatabase for phenotype and experimental data of human individuals
oYuichi Kodama, Jun Mashima, Mari T. Minowa, Minae Kawashima, Kazunori Miyazaki, Nobutaka Mitsuhashi, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi
The American Society of Human Genetics 2016   20 Oct 2016   
○Yuichi Kodama, Jun Mashima, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi
The Plant and Animal Genome XXIV Conference (PAG)   10 Jan 2016   
Enhancement of DDBJ nucleotide sequence submission system
○Takehide Kosuge, Takatomo Fujisawa, Jun Mashima, Haru Tsutsui, Mayumi Ejima, Eli Kaminuma, Toshihisa Takagi, Yasukazu Nakamura
26 Nov 2014   
New resources of DNA Data Bank of Japan: DDBJ Omics Archive and BioProject
○Yuichi Kodama, Asami Nozaki, Kyung-Bum Lee, Jun Mashima, Eli Kaminuma, Toshihisa Takagi, Kousaku Okubo, Yasukazu Nakamura
2 Dec 2011   
DDBJ created a new Web-based nucleotide sequence data submission tool, code name: D-easy
○Takehide Kosuge, Jun Mashima, Haru Tsutsui, Mayumi Ejima, Eli Kaminuma, Toshihisa Takagi, Kousaku Okubo, and Yasukazu Nakamura
2 Dec 2011   
DDBJ Activities: Contribution to the Research in Information Biology
○Mashima J, Kosuge T, Okido T, Kodama Y, Ikeo K, Sugawara H, Tateno Y, Gojobori T
3rd International Biocuration Conference   16 Apr 2009   
Introduction of DDBJ activities: Contribution to the research of information biology.
○Jun Mashima, Yoshio Tateno, Naruya Saito, Kousaku Okubo, Hideaki Sugawara, Takeshi Gojobori
8 Dec 2005   
Precise mapping of full-length cDNA sequences on the human genome.
Okayama T, ○Imanishi T, Iizuka T, Fumoto M, Kawanishi Y, Nishinomiya N, Shigemoto Y, Mashima J, Okido T, Habara T, Sugawara H, Gojobori T
HGM2002   14 Apr 2002   
Large-scale submission of mouse EST data and their handling at the DNA Data Bank of Japan (DDBJ)
Satoru Miyazaki, ○Jun Mashima, Tadashi Mizunuma, Hideaki Sugawara, Yoshio Tateno, Takashi Gojoubori
14th International Mouse Genome Consortium   Oct 2000   
Sequence assembly of human chromosomes at the DDBJ/CIB human genomics studio
○Tadashi Imanishi, Toshitsugu Okayama, Yuichi Kawanishi, Yasumasa Shigemoto, Jun Mashima, Hideaki Sugawara, Satoru Miyazaki, Kimitoshi Naitou, Takashi Gojobori
TIGR's 12th International Genome Sequencing and Analysis Conference   Jun 2000   
Expression of troponin T isoforms in muscle regeneration induced by chorio-allantoic grafting
○Nakada Kazuto, Jun Mashima, Jun-Ichi Miyazaki, Tamio Hirabayashi
International Symposium on Molecular Mechanisms of Myofibril Assembly   8 Nov 1996