論文

査読有り 国際誌
2018年1月31日

Rate constants, processivity, and productive binding ratio of chitinase A revealed by single-molecule analysis.

Physical chemistry chemical physics : PCCP
  • Akihiko Nakamura
  • Tomoyuki Tasaki
  • Yasuko Okuni
  • Chihong Song
  • Kazuyoshi Murata
  • Toshiya Kozai
  • Mayu Hara
  • Hayuki Sugimoto
  • Kazushi Suzuki
  • Takeshi Watanabe
  • Takayuki Uchihashi
  • Hiroyuki Noji
  • Ryota Iino
  • 全て表示

20
5
開始ページ
3010
終了ページ
3018
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.1039/c7cp04606e

Serratia marcescens chitinase A is a linear molecular motor that hydrolyses crystalline chitin in a processive manner. Here, we quantitatively determined the rate constants of elementary reaction steps, including binding (kon), translational movement (ktr), and dissociation (koff) with single-molecule fluorescence imaging. The kon for a single chitin microfibril was 2.1 × 109 M-1 μm-1 s-1. The koff showed two components, k (3.2 s-1, 78%) and k (0.38 s-1, 22%), corresponding to bindings to different crystal surfaces. From the kon, k, k and ratio of fast and slow dissociations, dissociation constants for low and high affinity sites were estimated as 2.0 × 10-9 M μm and 8.1 × 10-10 M μm, respectively. The ktr was 52.5 nm s-1, and processivity was estimated as 60.4. The apparent inconsistency between high turnover (52.5 s-1) calculated from ktr and biochemically determined low kcat (2.6 s-1) is explained by a low ratio (4.8%) of productive enzymes on the chitin surface (52.5 s-1 × 0.048 = 2.5 s-1). Our results highlight the importance of single-molecule analysis in understanding the mechanism of enzymes acting on a solid-liquid interface.

リンク情報
DOI
https://doi.org/10.1039/c7cp04606e
PubMed
https://www.ncbi.nlm.nih.gov/pubmed/29090301
ID情報
  • DOI : 10.1039/c7cp04606e
  • ISSN : 1463-9076
  • PubMed ID : 29090301

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