Genome Science, Totama Prefectural Award for Academic Research, The Toyama Prefectural Foundation
Apr 2001
Genome analysis of industrail microbe and development of integrated genome analysis system, The Commendation for Science and Technology by the Minister of Education, Culture, Sports, Science and Technology, MEXT; Ministry of Education、Culture、Sports、Science and Technology
The amphipod Hirondellea gigas inhabits the deepest regions of the oceans in extreme high-pressure conditions. However, the mechanisms by which this amphipod adapts to its high-pressure environment remain unknown. In this study, we investigated th...
Bioscience, Biotechnology ans Biochemistry 82(9) 1515-1517 Sep 2018 [Refereed]
MAPLE is an automated system for inferring the potential comprehensive functions harbored by genomes and metagenomes. To reduce runtime in MAPLE analyzing the massive amino acid datasets of over 1 million sequences, we improved it by adapting the ...
Journal of Bioscience and Bioengineering 126(4) 425-430 Oct 2018 [Refereed]
A stable d-lactate electrochemical sensing system was developed using a dye-linked d-lactate dehydrogenase (Dye-DLDH) from an uncultivated thermophilic archaeon, Candidatus Caldiarchaeum subterraneum. To develop the system, the putative gene encod...
Bioscience, Biotechnology ans Biochemistry 82(7) 1123-1133 Jul 2018 [Refereed]
Hirondellea species are common inhabitants in the hadal region deeper than 7,000 m. We found that Hirondellea gigas thrived in the Challenger Deep possessed polysaccharide hydrolases as digestive enzymes. To obtain various enzymes of other H. giga...
Altererythrobacter sp. strain B11 is an aromatic monomer-degrading bacterium newly isolated from sediment under the seabed off Kashima, Japan, at a depth of 2,100 m. Here, we report the complete nucleotide sequence of the genome of strain B11.
KANAI AKIO, FUJISHIMA KOSUKE, SUGAWARA JUN'ICHI, SATO ASAKO, SOGA TOMOYOSHI, HAMASHIMA KIYOFUMI, MURAKAMI SHINNOSUKE, MASUDA GO, FUURA TAKURO, TAKAKI YOSHIHIRO, TAKAI KEN, TAKAMI HIDETO, MILLER C. S., BAKER B. J., BANFIELD J. F., DI GIULIO M., ITO TAKASHI
Inst Ferment Osaka Res Commun (26) 137-147 Dec 2012
Marine metagenomics-Technological aspects and applications
Hideto Takami (Part:Joint Work, MAPLE enables functional assessment of microbiota in various environments)
Springer Jul 2019 ISBN:9789811381331
A main goal of metagenomic analysis is to elucidate comprehensive functions (i.e., the functionome) of entire communities across various environments, but only PCR amplicon analysis of 16S rDNA has been performed in most metagenomic projects so fa...
Microbial diversity of the genomic era
Hideto Takami (Part:Joint Work, 8.Molecular tools in microbial diversity: Functional assessment tool for genomes and metagenomes: MAPLE)
Elsevier Oct 2018 ISBN:9780128148495
Although one of the main goals of metagenomic analysis is the elucidation of functionome of entire communities across various environments, only PCR amplicon analysis of 16S rDNA has been performed in most metagenomic projects. This is in part bec...
Nelson K. ed., Hideto Takami (Part:Joint Work, New Method for Comparative Functional Genomics and Metagenomics Using KEGG MODULE)
Springer Jan 2015 ISBN:978-1-4614-4676-7
Although one of the main goals of genomic analysis is to elucidate the comprehensive functions
(functionome) in individual organisms or a whole community in various environments, a standard
evaluation method for discerning the functional potential...
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