Journal of Bioscience and Bioengineering 126(4) 425-430 2018年10月 [査読有り]
A stable d-lactate electrochemical sensing system was developed using a dye-linked d-lactate dehydrogenase (Dye-DLDH) from an uncultivated thermophilic archaeon, Candidatus Caldiarchaeum subterraneum. To develop the system, the putative gene encod...
Shu-Kuan Wong, Susumu Yoshizawa, Yu Nakajima, Marie Johanna Cuadra, Yuichi Nogi, Keiji Nakamura, Hideto Takami, Yoshitoshi Ogura, Tetsuya Hayashi, Hiroshi Xavier Chiura, Koji Hamasaki
International Journal of Systematic and Evolutionary Microbiology 68(9) 2872-2877 2018年9月 [査読有り]
A novel Gram-negative bacterium, designated 4G11T, was isolated from the sea surface microlayer of a marine inlet. On the basis of 16S rRNA gene sequence analysis, the strain showed the closest similarity to Amylibacter ulvae KCTC 32465T (99.0 %)....
Bioscience, Biotechnology and Biochemistry 82(9) 1515-1517 2018年9月 [査読有り]
MAPLE is an automated system for inferring the potential comprehensive functions harbored by genomes and metagenomes. To reduce runtime in MAPLE analyzing the massive amino acid datasets of over 1 million sequences, we improved it by adapting the ...
Bioscience, Biotechnology and Biochemistry 82(7) 1123-1133 2018年7月 [査読有り]
Hirondellea species are common inhabitants in the hadal region deeper than 7,000 m. We found that Hirondellea gigas thrived in the Challenger Deep possessed polysaccharide hydrolases as digestive enzymes. To obtain various enzymes of other H. giga...
Altererythrobacter sp. strain B11 is an aromatic monomer-degrading bacterium newly isolated from sediment under the seabed off Kashima, Japan, at a depth of 2,100 m. Here, we report the complete nucleotide sequence of the genome of strain B11.
Although one of the main goals of metagenomic analysis is the elucidation of functionome of entire communities across various environments, only PCR amplicon analysis of 16S rDNA has been performed in most metagenomic projects. This is in part bec...
Nelson K. ed., Hideto Takami (担当:共著, 範囲:New Method for Comparative Functional Genomics and Metagenomics Using KEGG MODULE)
Springer 2015年1月 ISBN:978-1-4614-4676-7
Although one of the main goals of genomic analysis is to elucidate the comprehensive functions
(functionome) in individual organisms or a whole community in various environments, a standard
evaluation method for discerning the functional potential...
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