Hideto Takami

J-GLOBAL         Last updated: Apr 22, 2019 at 15:25
 
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Name
Hideto Takami
E-mail
takamihjamstec.go.jp
Affiliation
Japan Agency for Marine-Earth Science and Technology
Section
R&D Center for Submarime Resources
Job title
Principal Scientist
Degree
Ph.D.(Tokyo Institute of Technology)
Research funding number
70359165

Research Areas

 
 

Academic & Professional Experience

 
Apr 2014
 - 
Today
Principal Scientist, Japan Agency for Marine-Earth Science & Technology
 
Apr 2006
 - 
Mar 2009
Program Director, Center for Extreme Biosphere Research, Japan Agency for Marine-Earth Science & Technology
 
Jan 2002
 - 
Jan 2003
visiting scientist, Scripps Institute of Oceanography, UC San Diego
 
Apr 2001
 - 
Mar 2009
Group Leader, Microbial Genome Research Group, Japan Marine Science & Technology
 
May 1995
 - 
Mar 2001
Research Associate, DeepStar Program, Japan Marine Science & Technology
 
Apr 1993
 - 
Apr 1995
visiting research associate, Center for Microbial Ecology, Michigan State University
 
Apr 1986
 - 
Mar 1991
Researcher, Central Lororatory, Kurita Water Industry Co. Ltd.
 

Education

 
Apr 1991
 - 
Mar 1993
Chemical engineering, Gradyate School of Tokyo Institute of Technology
 
Apr 1984
 - 
Mar 1986
Fermentation chemistry, Engineering, Graduate School of Yamanashi University
 
Apr 1980
 - 
Mar 1984
Brewing, Agriculture, Tokyo University of Agriculture
 

Awards & Honors

 
May 2001
Genome Science, Totama Prefectural Award for Academic Research, The Toyama Prefectural Foundation
 
Apr 2001
Genome analysis of industrail microbe and development of integrated genome analysis system, The Commendation for Science and Technology by the Minister of Education, Culture, Sports, Science and Technology, MEXT; Ministry of Education、Culture、Sports、Science and Technology
 

Published Papers

 
Hideki Kobayashi, Hirokazu Shimoshige, Yoshikata Nakajima, Wataru Arai, and Hideto Takami
PLoS One   14(4) e0206710   Apr 2019   [Refereed]
The amphipod Hirondellea gigas inhabits the deepest regions of the oceans in extreme high-pressure conditions. However, the mechanisms by which this amphipod adapts to its high-pressure environment remain unknown. In this study, we investigated th...
Wataru Arai, Takeaki Taniguchi, Susumu Goto, Yuki Moriya, Hideya Uehara, Kazuhiro Takemoto, Hiroyuki Ogata, and Hideto Takami
Bioscience, Biotechnology ans Biochemistry   82(9) 1515-1517   Sep 2018   [Refereed]
MAPLE is an automated system for inferring the potential comprehensive functions harbored by genomes and metagenomes. To reduce runtime in MAPLE analyzing the massive amino acid datasets of over 1 million sequences, we improved it by adapting the ...
Takenori Satomura, Junji Hayashi, Hiroaki Sakamoto, Takuro Nunoura, Yoshihiro Takaki, Ken Takai, Hideto Takami, Toshihisa Ohshima, Haruhiko Sakuraba, Shin-ichiro Suye
Journal of Bioscience and Bioengineering   126(4) 425-430   Oct 2018   [Refereed]
A stable d-lactate electrochemical sensing system was developed using a dye-linked d-lactate dehydrogenase (Dye-DLDH) from an uncultivated thermophilic archaeon, Candidatus Caldiarchaeum subterraneum. To develop the system, the putative gene encod...
Hideki Kobayashi, Takahiko Nagahama, Wataru Arai, Yohei Sasagawa, Mana Umeda, Tetsutaro Hayashi, Itoshi Nikaido, Hiromi Watanabe, Kazumasa Oguri, Hiroshi Kitazato, Kantaro Fujioka, Yukari Kido, and Hideto Takami
Bioscience, Biotechnology ans Biochemistry   82(7) 1123-1133   Jul 2018   [Refereed]
Hirondellea species are common inhabitants in the hadal region deeper than 7,000 m. We found that Hirondellea gigas thrived in the Challenger Deep possessed polysaccharide hydrolases as digestive enzymes. To obtain various enzymes of other H. giga...
Allyn H. Maeda, Shinro Nishi, Shun’ichi Ishii, Yasuhiro Shimane, Hideki Kobayashi, Junko Ichikawa, Kanako Kurosawa, Wataru Arai, Hideto Takami, Yukari Ohta
Genome announcements   6(12) e00200-18   Mar 2018
Altererythrobacter sp. strain B11 is an aromatic monomer-degrading bacterium newly isolated from sediment under the seabed off Kashima, Japan, at a depth of 2,100 m. Here, we report the complete nucleotide sequence of the genome of strain B11.

Misc

 
To functional metagenomics from meta 16S rRNA analysis
Hideto Takami
News letter of Society of Genome Microbiology, Japan   15 3-8   Jun 2017   [Invited]
TAKAMI HIDETO
日本細菌学雑誌   69(1) 114   Feb 2014   [Invited]
TAKAMI Hideto
KAGAKU TO SEIBUTSU   51(4) 214-222   2013   [Invited]
初期生命はいつどんな環境のもとで形作られ,どのようなものだったか? また,この初期生命がどのように進化し,現在私たちの身の回りに数多く存在するバクテリアやアーキアへと進化を遂げたのであろうか? 私たちヒトも生き物である以上,科学者のみならず誰でも共通に抱く疑問であろう.初期生命がもつ機能は単純で地球が本来もつ物理・化学的なエネルギーによって支えられたと考えられている.現在の地球環境にも,初期生命誕生の頃に近い環境が残されているとするならば,初期生命に近い姿を残した微生物が現存するのだろうか...
KANAI AKIO, FUJISHIMA KOSUKE, SUGAWARA JUN'ICHI, SATO ASAKO, SOGA TOMOYOSHI, HAMASHIMA KIYOFUMI, MURAKAMI SHINNOSUKE, MASUDA GO, FUURA TAKURO, TAKAKI YOSHIHIRO, TAKAI KEN, TAKAMI HIDETO, MILLER C. S., BAKER B. J., BANFIELD J. F., DI GIULIO M., ITO TAKASHI
Inst Ferment Osaka Res Commun   (26) 137-147   Dec 2012
MURAKAMI MASARU, MORITA HIDETOSHI, KATO YUKIO, HISAMATSU SHIN, OSHIMA KENSHIRO, HATTORI MASAHIRA, TO HIDEHIRO, TAKAMI HIDETO, IGIMI SHIZUNOBU, KUWAHARA TOMOMI, TAKAGI KUNIAKI
麻布大学雑誌   19-20 121-123   Mar 2010

Books etc

 
Marine metagenomics-Technological aspects and applications
Hideto Takami (Part:Joint Work, MAPLE enables functional assessment of microbiota in various environments)
Springer   Sep 2019   ISBN:978-981-13-8133-1
A main goal of metagenomic analysis is to elucidate comprehensive functions (i.e., the functionome) of entire communities across various environments, but only PCR amplicon analysis of 16S rDNA has been performed in most metagenomic projects so fa...
Microbial diversity of the genomic era
Hideto Takami (Part:Joint Work, 8.Molecular tools in microbial diversity: Functional assessment tool for genomes and metagenomes: MAPLE)
Elsevier   Oct 2018   ISBN:https://doi.org/10.1016/B978-0-12-814849-5.00008-3
Although one of the main goals of metagenomic analysis is the elucidation of functionome of entire communities across various environments, only PCR amplicon analysis of 16S rDNA has been performed in most metagenomic projects. This is in part bec...
実験医学別冊 「今すぐ始める! メタゲノム解析 実験プロトコール」
Hideto Takami (Part:Joint Work, 微生物叢の生理代謝機能を評価するMAPLEシステム)
羊土社   Dec 2016   ISBN:978-4-7581-0197-4
これまでの16S rRNA遺伝子や特定の機能を担う鍵遺伝子の多様性のみに基づくメタゲノム解析では、得られる情報に限界がある。そこで本稿では、次世代シークエンサー (NGS) によって大量に得られるメタゲノム配列に潜む生理・代謝機能を評価する筆者らが開発したシステムについて紹介する。本システムでは、微生物叢の“だれが” “どんな機能を” “どのぐらい”持っているか、また、リボソームタンパク質の生物種情報に基づき、微生物叢の組成を知ることができる。
Encylopedia of Metagenomics
Nelson K. ed., Hideto Takami (Part:Joint Work, New Method for Comparative Functional Genomics and Metagenomics Using KEGG MODULE)
Springer   Jan 2015   ISBN:978-1-4614-4676-7
Although one of the main goals of genomic analysis is to elucidate the comprehensive functions
(functionome) in individual organisms or a whole community in various environments, a standard
evaluation method for discerning the functional potential...
環境と微生物の辞典
Hideto Takami (Part:Joint Work, 好アルカリ性微生物)
朝倉書店   Jul 2014   

Conference Activities & Talks

 
Human microbiome from the functional points of view [Invited]
Hideto Takami
The Japanese Association for Infectious Disease   28 Oct 2017   
Ocean metagenomics using improved MAPLE system
Hideto Takami, Takeaki Taniguchi, Kazuhiro Takemoto, Koji Hamasaki, Yuki Moriya, Susumu Goto
1 Dec 2016   
ARAI WATARU, TANIGUCHI TAKEAKI, GOTO SUSUMU, MORIYA YUKI, TAKEMOTO KAZUHIRO, HUANG HE, TAKAMI HIDETO
日本農芸化学会大会講演要旨集(Web)   5 Mar 2015   
TAKAMI HIDETO, ARAI WATARU, UCHIYAMA IKUO, TANIGUCHI TAKEAKI
日本農芸化学会大会講演要旨集(Web)   5 Mar 2015   
KOBAYASHI HIDEKI, HARIYAMA TAKAHIKO, TAKAMI HIDETO, ARAI WATARU, TAKAKU YASUHARU, YAMAHAMA YUMI, TOYAMA MINA
日本農芸化学会大会講演要旨集(Web)   5 Mar 2015   

Research Grants & Projects

 
Study on recovery process of infant gut microbiome
Japan Society for the Promotion of Sciences: Grant-in-Aid Scientific Research (B)
Project Year: Apr 2019 - Mar 2022    Investigator(s): Haruyuki Imaoji
Exploration of diversity of Anammox bacteria
Japan Society for the Promotion of Sciences: Grant-in-Aid Scientific Research (B)
Project Year: Apr 2019 - Mar 2022    Investigator(s): Megumi Kuroiwa
Japan Society for the Promotion of Science: Challenging exploratory research
Project Year: Jul 2018 - Mar 2020    Investigator(s): Hideto Takami
Japan Society for the Promotion of Sciences: Grant-in-Aid Scientific Research (A)
Project Year: Apr 2017 - Mar 2021    Investigator(s): Hideto Takami
Japan Society for the Promotion of Science: Grant-in-Aid for Scientific Research (A)
Project Year: Apr 2016 - Mar 2020    Investigator(s): PI: Koji Hamsaki, Co-PI: Hideto Takami

Patents

 
特開平04-53498 : プロテアーゼの生産方法
髙見英人,三田匡一郎,掘越弘毅
特開04-53498 : 不溶性蛋白質の溶解剤
髙見英人, 掘越弘毅,秋葉晄彦
特開平02-255087 : 髙見英人, 掘越弘毅,秋葉晄彦
Hideto Takami