論文

査読有り
2012年7月

IRView: a database and viewer for protein interacting regions

BIOINFORMATICS
  • Shigeo Fujimori
  • ,
  • Naoya Hirai
  • ,
  • Kazuyo Masuoka
  • ,
  • Tomohiro Oshikubo
  • ,
  • Tatsuhiro Yamashita
  • ,
  • Takanori Washio
  • ,
  • Ayumu Saito
  • ,
  • Masao Nagasaki
  • ,
  • Satoru Miyano
  • ,
  • Etsuko Miyamoto-Sato

28
14
開始ページ
1949
終了ページ
1950
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.1093/bioinformatics/bts289
出版者・発行元
OXFORD UNIV PRESS

Protein-protein interactions (PPIs) are mediated through specific regions on proteins. Some proteins have two or more protein interacting regions (IRs) and some IRs are competitively used for interactions with different proteins. IRView currently contains data for 3417 IRs in human and mouse proteins. The data were obtained from different sources and combined with annotated region data from InterPro. Information on non-synonymous single nucleotide polymorphism sites and variable regions owing to alternative mRNA splicing is also included. The IRView web interface displays all IR data, including user-uploaded data, on reference sequences so that the positional relationship between IRs can be easily understood. IRView should be useful for analyzing underlying relationships between the proteins behind the PPI networks.

リンク情報
DOI
https://doi.org/10.1093/bioinformatics/bts289
PubMed
https://www.ncbi.nlm.nih.gov/pubmed/22592381
Web of Science
https://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=JSTA_CEL&SrcApp=J_Gate_JST&DestLinkType=FullRecord&KeyUT=WOS:000306136100031&DestApp=WOS_CPL
ID情報
  • DOI : 10.1093/bioinformatics/bts289
  • ISSN : 1367-4803
  • PubMed ID : 22592381
  • Web of Science ID : WOS:000306136100031

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