論文

査読有り
2013年7月

Nitrification-driven forms of nitrogen metabolism in microbial mat communities thriving along an ammonium-enriched subsurface geothermal stream

GEOCHIMICA ET COSMOCHIMICA ACTA
  • Manabu Nishizawa
  • Keisuke Koba
  • Akiko Makabe
  • Naohiro Yoshida
  • Masanori Kaneko
  • Shingo Hirao
  • Jun-ichiro Ishibashi
  • Toshiro Yamanaka
  • Takazo Shibuya
  • Tohru Kikuchi
  • Miho Hirai
  • Junichi Miyazaki
  • Takuro Nunoura
  • Ken Takai
  • 全て表示

113
開始ページ
152
終了ページ
173
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.1016/j.gca.2013.03.027
出版者・発行元
PERGAMON-ELSEVIER SCIENCE LTD

We report here the concurrence and interaction among forms of nitrogen metabolism in thermophilic microbial mat communities that developed in an ammonium-abundant subsurface geothermal stream. First, the physical and chemical conditions of the stream water at several representative microbial mat habitats (including upper, middle and downstream sites) were characterized. A thermodynamic calculation using these physical and chemical conditions predicted that nitrification consisting of ammonia and nitrite oxidations would provide one of the largest energy yields of chemolithotrophic metabolisms. Second, near-complete prokaryotic 16S rRNA gene clone analysis was conducted for representative microbial mat communities at the upper, middle and downstream sites. The results indicated a dynamic shift in the 16S rRNA gene phylotype composition through physical and chemical variations of the stream water. The predominant prokaryotic components varied from phylotypes related to hydrogeno (H-2)- and thio (S)-trophic Aquificales, thermophilic methanotrophs and putative ammonia-oxidizing Archaea (AOA) located upstream (72 degrees C) to the phylotypes affiliated with putative AOA and nitrite-oxidizing bacteria (NOB) located at the middle and downstream sites (65 and 57 degrees C, respectively). In addition, the potential in situ metabolic activities of different forms of nitrogen metabolism were estimated through laboratory experiments using bulk microbial mat communities. Finally, the compositional and isotopic variation in nitrogen compounds was investigated in the stream water flowing over the microbial mats and in the interstitial water inside the mats. Although the stream water was characterized by a gradual decrease in the total ammonia concentration (Sigma NH3: the sum of ammonia and ammonium concentrations) and a gradual increase in the total concentration of nitrite and nitrate (NO2- + NO3-), the total inorganic nitrogen concentration (TIN: the sum of Sigma NH3, NO2- and NO3- concentrations) was nearly constant (250 mu M) throughout the stream. Based on the level of detectable dissolved molecular oxygen (O-2) of the stream water (>= 38 mu M) along with metabolic measurements, it was predicted that nitrification by thermophilic AOA and NOB components in the microbial mats that were exposed to the stream water would constrain the concentrations and isotopic ratios of Sigma NH3, NO2- and NO3- of the stream water. The delta N-15 value of Sigma NH3 increased from 0 parts per thousand to 7 parts per thousand with decreasing concentration, which was consistent with the previously reported isotopic fractionation for microbial Sigma NH3 oxidation. In contrast, the delta N-15 value of NO2- was 22 parts per thousand lighter than that of NO3- in the steam water at the same site, indicating an inverse isotopic fractionation for microbial NO2- oxidation. The variation in concentrations and delta N-15 values of Sigma NH3, NO2- and NO3- was largely explained using a two-step nitrification model, and the apparent nitrogen isotopic fractionations of Sigma NH3 oxidation and NO2- oxidation were estimated to be 0.986 and 1.020, respectively.
In the interstitial water within the microbial mats, the compositional and isotopic properties of TIN at the downstream site indicated potential denitrification by the anaerobic microbial components. The geochemically deduced transition of microbial nitrogen metabolism was substantiated through cultivation-independent microbiological analyses. (c) 2013 Elsevier Ltd. All rights reserved.

リンク情報
DOI
https://doi.org/10.1016/j.gca.2013.03.027
Web of Science
https://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=JSTA_CEL&SrcApp=J_Gate_JST&DestLinkType=FullRecord&KeyUT=WOS:000318991300011&DestApp=WOS_CPL
URL
http://www.scopus.com/inward/record.url?eid=2-s2.0-84877031941&partnerID=MN8TOARS
URL
http://orcid.org/0000-0003-0787-4731
ID情報
  • DOI : 10.1016/j.gca.2013.03.027
  • ISSN : 0016-7037
  • eISSN : 1872-9533
  • ORCIDのPut Code : 37146643
  • SCOPUS ID : 84877031941
  • Web of Science ID : WOS:000318991300011

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