Masanori Kakuta - My portal

Profile Information

Affiliation: 特任助教, M&Dデータ科学センター, 東京医科歯科大学

Degree: Ph.D.(The University of Tokyo)

J-GLOBAL ID: 201801013418632189
researchmap Member ID: B000336373

Research Interests

Research Areas

Papers

Two Blautia Species Associated with Visceral Fat Accumulation: A One-Year Longitudinal Study

Naoki Ozato, Tohru Yamaguchi, Kenta Mori, Mitsuhiro Katashima, Mika Kumagai, Koichi Murashita, Yoshihisa Katsuragi, Yoshinori Tamada, Masanori Kakuta, Seiya Imoto …

Biology, 11(2) 318-318, Feb 16, 2022 Peer-reviewed
Application of state-space model with skew-t measurement noise to blood test value prediction

Takanori Hasegawa, Rui Yamaguchi, Masanori Kakuta, Masataka Ando, Jung Songee, Itoyo Tokuda, Koichi Murashita, Seiya Imoto

Applied Mathematical Modelling, 100 365-378, Dec, 2021 Peer-reviewed
Metagenome Data on Intestinal Phage-Bacteria Associations Aids the Development of Phage Therapy against Pathobionts.

Kosuke Fujimoto, Yasumasa Kimura, Masaki Shimohigoshi, Takeshi Satoh, Shintaro Sato, Georg Tremmel, Miho Uematsu, Yunosuke Kawaguchi, Yuki Usui, Yoshiko Nakano …

Cell host & microbe, 28(3) 380-389, Sep 9, 2020 Peer-reviewed
Metagenomic profiling of gut microbiome in early chronic kidney disease.

Noriaki Sato, Masanori Kakuta, Takanori Hasegawa, Rui Yamaguchi, Eiichiro Uchino, Koichi Murashita, Shigeyuki Nakaji, Seiya Imoto, Motoko Yanagita, Yasushi Okuno

Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association, Sep 1, 2020 Peer-reviewed
Combined Cohesin-RUNX1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic Syndromes.

Yotaro Ochi, Ayana Kon, Toyonori Sakata, Masahiro M Nakagawa, Naotaka Nakazawa, Masanori Kakuta, Keisuke Kataoka, Haruhiko Koseki, Manabu Nakayama, Daisuke Morishita …

Cancer discovery, 10(6) 836-853, Jun, 2020 Peer-reviewed
Metagenomic analysis of bacterial species in tongue microbiome of current and never smokers.

Noriaki Sato, Masanori Kakuta, Takanori Hasegawa, Rui Yamaguchi, Eiichiro Uchino, Wataru Kobayashi, Kaori Sawada, Yoshihiro Tamura, Itoyo Tokuda, Koichi Murashita …

NPJ biofilms and microbiomes, 6(1) 11-11, Mar 13, 2020 Peer-reviewed
Association between breath methane concentration and visceral fat area: a population-based cross-sectional study.

Naoki Ozato, Shinichiro Saito, Tohru Yamaguchi, Mitsuhiro Katashima, Itoyo Tokuda, Kaori Sawada, Yoshihisa Katsuragi, Masanori Kakuta, Seiya Imoto, Kazushige Ihara …

Journal of breath research, 14(2) 026008-026008, Feb 25, 2020 Peer-reviewed
Prediction of blood test values under different lifestyle scenarios using time-series electronic health record.

Takanori Hasegawa, Rui Yamaguchi, Masanori Kakuta, Kaori Sawada, Kenichi Kawatani, Koichi Murashita, Shigeyuki Nakaji, Seiya Imoto

PloS one, 15(3) e0230172, 2020 Peer-reviewed
The relationship between cigarette smoking and the tongue microbiome in an East Asian population.

Noriaki Sato, Masanori Kakuta, Eiichiro Uchino, Takanori Hasegawa, Ryosuke Kojima, Wataru Kobayashi, Kaori Sawada, Yoshihiro Tamura, Itoyo Tokuda, Seiya Imoto …

Journal of oral microbiology, 12(1) 1742527-1742527, 2020 Peer-reviewed
Blautia genus associated with visceral fat accumulation in adults 20-76 years of age.

Naoki Ozato, Shinichiro Saito, Tohru Yamaguchi, Mitsuhiro Katashima, Itoyo Tokuda, Kaori Sawada, Yoshihisa Katsuragi, Masanori Kakuta, Seiya Imoto, Kazushige Ihara …

NPJ biofilms and microbiomes, 5(1) 28-28, Oct 4, 2019 Peer-reviewed
Blautia genus associated with visceral fat accumulation in adults 20-76 years of age.

Naoki Ozato, Shinichiro Saito, Tohru Yamaguchi, Mitsuhiro Katashima, Itoyo Tokuda, Kaori Sawada, Yoshihisa Katsuragi, Masanori Kakuta, Seiya Imoto, Kazushige Ihara …

NPJ biofilms and microbiomes, 5 28-28, 2019 Peer-reviewed
A Massively Parallel Sequence Similarity Search for Metagenomic Sequencing Data

Masanori Kakuta, Shuji Suzuki, Kazuki Izawa, Takashi Ishida, Yutaka Akiyama

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 18(10), Oct, 2017 Peer-reviewed
GHOSTX: A fast sequence homology search tool for functional annotation of metagenomic data

Shuji Suzuki, Takashi Ishida, Masahito Ohue, Masanori Kakuta, Yutaka Akiyama

Methods in Molecular Biology, 1611 15-25, 2017 Peer-reviewed
GPU-Acceleration of Sequence Homology Searches with Database Subsequence Clustering

Shuji Suzuki, Masanori Kakuta, Takashi Ishida, Yutaka Akiyama

PLOS ONE, 11(8) e0157338, Aug, 2016 Peer-reviewed
Faster sequence homology searches by clustering subsequences

Shuji Suzuki, Masanori Kakuta, Takashi Ishida, Yutaka Akiyama

BIOINFORMATICS, 31(8) 1183-1190, Apr, 2015 Peer-reviewed
GHOSTX: An Improved Sequence Homology Search Algorithm Using a Query Suffix Array and a Database Suffix Array

Shuji Suzuki, Masanori Kakuta, Takashi Ishida, Yutaka Akiyama

PLOS ONE, 9(8) e103833, Aug, 2014 Peer-reviewed
Extreme Big Data (EBD): Next generation big data infrastructure technologies towards yottabyte/year

Satoshi Matsuoka, Hitoshi Sato, Osamu Tatebe, Fuyumasa Takatsu, Mohamed Amin Jabri, Michihiro Koibuchi, Ikki Fujiwara, Shuji Suzuki, Masanori Kakuta, Takashi Ishida …

Supercomputing Frontiers and Innovations, 1(2) 89-107, 2014 Peer-reviewed
HPLC Retention time prediction for metabolome analysi.

Hagiwara T, Saito S, Ujiie Y, Imai K, Kakuta M, Kadota K, Terada T, Sumikoshi K, Shimizu K, Nishi T

Bioinformation, 5(6) 255-258, Nov, 2010 Peer-reviewed
Prediction of carbohydrate-binding proteins from sequences using support vector machines

Kentaro Shimizu, Seizi Someya, Masanori Kakuta, Mizuki Morita, Kazuya Sumikoshi, Wei Cao, Zhenyi Ge, Osamu Hirose, Shugo Nakamura, Tohru Terada

Advances in Bioinformatics, 2010, 2010 Peer-reviewed

Research Projects

High-resolution metagenomic sequence data analysis for antibiotic resistance genes

Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (C), Grant-in-Aid for Scientific Research (C), Japan Society for the Promotion of Science, Apr, 2019 - Mar, 2022