Makoto Nakakido

J-GLOBAL         Last updated: May 30, 2019 at 17:30
 
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Name
Makoto Nakakido
E-mail
nakakidoprotein.t.u-tokyo.ac.jp
Affiliation
The University of Tokyo

Research Areas

 
 

Academic & Professional Experience

 
Aug 2017
 - 
Today
Assistant professor, School of Engineering, Department of Bioengineering, The University of Tokyo
 
Jan 2017
 - 
Jul 2017
Project assistant professor, School of Engineering, Department of Bioengineering, The University of Tokyo
 
Apr 2016
 - 
Dec 2016
Project researcher, School of Engineering, Department of Bioengineering, The University of Tokyo
 
Jan 2013
 - 
Dec 2015
Postdoctoral scholar, Department of medicine, The University of Chicago
 
Apr 2011
 - 
Dec 2012
Project researcher, The institute of medical sciences, The University of Tokyo
 

Awards & Honors

 
Jul 2015
JB prize for publication, The Japanese Biochemical Society
 

Published Papers

 
Yoshida K, Kuroda D, Kiyoshi M, Nakakido M, Nagatoishi S, Soga S, Shirai H, Tsumoto K
Scientific reports   9(1) 4482   Mar 2019   [Refereed]
Eguchi A, Nakakido M, Nagatoishi S, Kuroda D, Tsumoto K, Nagamune T, Kawahara M
Biotechnology and bioengineering      Mar 2019   [Refereed]
Nariai Y, Kamino H, Obayashi E, Kato H, Sakashita G, Sugiura T, Migita K, Koga T, Kawakami A, Sakamoto K, Kadomatsu K, Nakakido M, Tsumoto K, Urano T
Archives of biochemistry and biophysics      Jan 2019   [Refereed]
Yamashita T, Mizohata E, Nagatoishi S, Watanabe T, Nakakido M, Iwanari H, Mochizuki Y, Nakayama T, Kado Y, Yokota Y, Matsumura H, Kawamura T, Kodama T, Hamakubo T, Inoue T, Fujitani H, Tsumoto K
Structure (London, England : 1993)      Nov 2018   [Refereed]
Molecular basis for governing the morphology of type-I collagen fibrils by Osteomodulin
Tashima T, Nagatoishi S, Caaveiro JMM, Nakakido M, Sagara H, Kusano-Arai O, Iwanari H, Mimuro H, Hamakubo T, Ohnuma S, Tsumoto K
Commun. Biol.   33    Apr 2018   [Refereed]
Intramolecular H-bonds govern the recognition of a flexible peptide by an antibody.
Miyanabe K, Akiba H, Kuroda D, Nakakido M, Kusano-Arai O, Iwanari H, Hamakubo T, Caaveiro JMM, Tsumoto K.
J Biochem.   164(1):65-76    Jul 2018   [Refereed]
Tyrosine Sulfation Restricts the Conformational Ensemble of a Flexible Peptide, Strengthening the Binding Affinity for an Antibody.
Miyanabe K, Yamashita T, Abe Y, Akiba H, Takamatsu Y, Nakakido M, Hamakubo T, Ueda T, Caaveiro JMM, Tsumoto K.
Biochemistry   57(28):4177-4185(57(28):4177-4185)    Jul 2018   [Refereed]
Discovery and Optimization of Inhibitors of the Parkinson's Disease Associated Protein DJ-1.
Tashiro S, Caaveiro JMM, Nakakido M, Tanabe A, Nagatoishi S, Tamura Y, Matsuda N, Liu D, Hoang QQ, Tsumoto K.
ACS Chem Biol.   in press    Aug 2018   [Refereed]
Improvement of antibody affinity by introduction of basic amino acid residues into the framework region.
Fukunaga A, Maeta S, Reema B, Nakakido M, Tsumoto K
Biochem Biophys Rep.   15:81-85    Jul 2018   [Refereed]
Structural behavior of keratin-associated protein 8.1 in human hair as revealed by a monoclonal antibody.
Akiba H, Ikeuchi E, Javkhlan G, Fujikawa H, Arai-Kusano O, Iwanari H, Nakakido M, Hamakubo T, Shimomura Y, Tsumoto K.
J Struct Biol.   (18)30231-4    Aug 2018   [Refereed]
Tanabe A, Nakano K, Nakakido M, Nagatoishi S, Tanaka Y, Tsumoto K, Uchimaru K, Watanabe T
Biochem Biophys Res Commun.   496(2):614-620    Feb 2018   [Refereed]
Regulation of poly(ADP-Ribose) polymerase 1 functions by post-translational modifications.
Piao L, Fujioka K, Nakakido M, Hamamoto R.
Front Biosci (Landmark Ed)   23:13-26    Jan 2018   [Refereed]
Hoshino M, Nakakido M, Nagatoishi S, Aikawa C, Nakagawa I, Tsumoto K
Biochem Biophys Res Commun.   493(2):1109-1114    Nov 2017   [Refereed]
Thermodynamic analyses of amino acid residues at the interface of an antibody B2212A and its antigen roundabout homolog 1.
Yui A, Akiba H, Kudo S, Nakakido M, Nagatoishi S, Tsumoto K
J Biochem.   162(4):255-258    Oct 2017   [Refereed]
Yoshioka Y, Suzuki T, Matsuo Y, Nakakido M, Tsurita G, Simone C, Watanabe T, Dohmae N, Nakamura Y, Hamamoto R
Oncotarget   7(46):75023-75037    Nov 2016   [Refereed]
Nakakido M, Tamura K, Chung S, Ueda K, Fujii R, Kiyotani K, Nakamura Y
Int J Oncol.   49(3):868-76.    Sep 2016   [Refereed]
Piao L, Nakakido M, Suzuki T, Dohmae N, Nakamura Y, Hamamoto R
Oncotarget   7(16):22846-56    Apr 2016   [Refereed]
Miles WO, Lepesant JM, Bourdeaux J, Texier M, Kerenyi MA, Nakakido M, Hamamoto R, Orkin SH, Dyson NJ, Di Stefano L
Mol Cell Biol   35(24):4199-211    Dec 2015   [Refereed]
Deng X, Von Keudell G, Suzuki T, Dohmae N, Nakakido M, Piao L, Yoshioka Y, Nakamura Y, Hamamoto R
Oncotarget   6(34):35173-82    Nov 2015   [Refereed]
Nakakido M, Deng Z, Suzuki T, Dohmae N, Nakamura Y, Hamamoto R
Oncotarget   6(31):30957-67    Oct 2015   [Refereed]
Nakakido M, Deng Z, Suzuki T, Dohmae N, Nakamura Y, Hamamoto R.
Neoplasia   (4):367-73    Apr 2015   [Refereed]
Nakayama T, Mizohata E, Yamashita T, Nagatoishi S, Nakakido M, Iwanari H, Mochizuki Y, Kado Y, Yokota Y, Satoh R, Tsumoto K, Fujitani H, Kodama T, Hamakubo T, Inoue T.
Protein Sci.   24(3):328-40    Mar 2015   [Refereed]
Saloura V, Cho HS, Kiyotani K, Alachkar H, Zuo Z, Nakakido M, Tsunoda T, Seiwert T, Lingen M, Licht J, Nakamura Y, Hamamoto R
Mol Cancer Res.   13(2):293-304.    Feb 2015   [Refereed]
Sone K, Piao L, Nakakido M, Ueda K, Jenuwein T, Nakamura Y, Hamamoto R
Nat Commun.   5:5691    Dec 2014   [Refereed]
Nakakido M, Aikawa C, Nakagawa I, Tsumoto K.
J Biochem.   156(3):155-62    Sep 2014   [Refereed]
Daigo K, Nakakido M, Ohashi R, Fukuda R, Matsubara K, Minami T, Yamaguchi N, Inoue K, Jiang S, Naito M, Tsumoto K, Hamakubo T.
Sci Signal.   7(343):ra88    Sep 2014   [Refereed]
Hamamoto R, Toyokawa G, Nakakido M, Ueda K, Nakamura Y
Cancer Lett.   351(1):126-33    Aug 2014   [Refereed]
Kiyoshi M, Caaveiro JM, Miura E, Nagatoishi S, Nakakido M, Soga S, Shirai H, Kawabata S, Tsumoto K.
PLoS One   9(1):e87099    Jan 2014   [Refereed]
Nakakido M, Kudou M, Arakawa T, Tsumoto K.
Curr Pharm Biotechnol.   10(4):415-20    Jan 2009   [Refereed]
Nakakido M, Tanaka Y, Mitsuhori M, Kudou M, Ejima D, Arakawa T, Tsumoto K.
Biophys Chem.   137(2-3):105-9.    Oct 2008   [Refereed]
Nakakido M, Tanaka Y, Sokabe M, Tsumoto K.
Biochem Biophys Res Commun.   371(4):596-9.    Jul 2008   [Refereed]
Nakakido M, Tanaka Y, Tsumoto K.
J Biochem.   142(2):131-4.    Aug 2007   [Refereed]