A hybrid method for estimation of atmospheric concentrations of multiple radionuclides was developed and applied to NaI(Tl) pulse height records measured in Ibaraki Prefecture in the morning of 15 March 2011 when three radioactive plumes from the Fukushima Dai-Ichi Nuclear Power Plant Accident passed. The method is based on the simple principle for separation from deposited radionuclides' contribution and the concentration estimation for multiple radionuclides. Difficulty in the concentration estimation due to complexity of surrounding terrains and geometry was overcome to obtain spatiotemporal variations in atmospheric concentrations of Xe-133, Te-132, I-131, I-132 and I-133 in the three plumes at 21 monitoring stations. The plume axis with higher I-131 concentration of 5.40 kBq m-3 than the previous estimations during the second plume was found in the northwestern inland area. A substantially lower Xe-133/I-131 concentration ratio of the first plume than those of the others was again recognized. The details of non-uniform spatial distribution of the radionuclide composition were found for each of the three plumes.