Yoshihiro Okumura

Profile Information

Affiliation: Expert Technician, Neuroinformatics Unit, Center for Brain Science, RIKEN

ORCID ID: https://orcid.org/0000-0002-9650-0362
J-GLOBAL ID: 201101066983482420
researchmap Member ID: B000000644

External link: https://www.ni.riken.jp/

Research Interests

Research Areas

Life sciences / Neuroscience - general /

Research History

Apr, 2018 - Present

Neuroinformatics Unit, Integrative Computational Brain Science Collaboration Division, RIKEN Center for Brain Science
Apr, 2006 - Mar, 2018

Neuroinformatics Japan Center, RIKEN BSI
Apr, 2003 - Mar, 2006

Laboratory for Neuroinformatics, RIKEN BSI

Awards

Mar, 2013

Technology Incentive Award, Development of Innovative Neuroinformatics Platform by using XooNIps, RIKEN

Yoshihiro Okumura, Takayuki Kannon, Kouji Makimura, Keiichiro Inagaki

Papers

Open source code for behavior analysis in rodents

Satoko Hattori, Yoshihiro Okumura, Keizo Takao, Yoko Yamaguchi, Tsuyoshi Miyakawa

Neuropsychopharmacology Reports, 39(1) 67-69, Mar, 2019 Peer-reviewed
ViBrism DB: an interactive search and viewer platform for 2D/3D anatomical images of gene expression and co-expression networks.

Morita M, Shimokawa K, Nishimura M, Nakamura S, Tsujimura Y, Takemoto S, Tawara T, Yokota H, Wemler S, Miyamoto D …

Nucleic acids research, 47(D1) D859-D866, Jan, 2019 Peer-reviewed
Neuroinformatics Infrastructure for data sharing developed in J-Node

Yamaguchi Yoko, Okumura Yoshihiro, Kannon Takayuki, Kazawa Tomoki, Suenaga Sawako, Ishii Itsuko, Honda Ayumi, Ogawa Miyabi, Usui Shiro

Frontiers in Neuroinformatics, 10, 2016 Peer-reviewed
Reprint of: Simulation Platform: A cloud-based online simulation environment

Tadashi Yamazaki, Hidetoshi Ikeno, Yoshihiro Okumura, Shunji Satoh, Yoshimi Kamiyama, Yutaka Hirata, Keiichiro Inagaki, Akito Ishihara, Takayuki Kannon, Shiro Usui

NEURAL NETWORKS, 24(9) 927-932, Nov, 2011 Peer-reviewed
Simulation Platform: A cloud-based online simulation environment

Tadashi Yamazaki, Hidetoshi Ikeno, Yoshihiro Okumura, Shunji Satoh, Yoshimi Kamiyama, Yutaka Hirata, Keiichiro Inagaki, Akito Ishihara, Takayuki Kannon, Shiro Usui

NEURAL NETWORKS, 24(7) 693-698, Sep, 2011 Peer-reviewed
Basic scheme of Neuroinformatics platform: XooNIps

Shiro Usui, Yoshihiro Okumura

COMPUTATIONAL INTELLIGENCE: RESEARCH FRONTIERS, 5050 102-116, 2008 Peer-reviewed
Customizable neuroinformatics database system: XooNIps and its application to the pupil platform

Kazutsuna Yamaji, Hiroyuki Sakai, Yoshihiro Okumura, Shiro Usui

COMPUTERS IN BIOLOGY AND MEDICINE, 37(7) 1036-1041, Jul, 2007 Peer-reviewed
Development of the Neuroinformatics Base Platform System: XooNIps

Yoshihiro OKUMURA

International Journal of Computational Intelligence Research, 3(1) 1-5, Feb, 2007 Peer-reviewed
Visiome environment: enterprise solution for neuroinformatics in vision science

S Usui, Yamaguchi, I, H Ikeno, K Takebe, Y Fujii, Y Okumura

NEUROCOMPUTING, 58 1097-1101, Jun, 2004 Peer-reviewed
Visiome environment: enterprise solution for neuroinformatics in vision science

S Usui, Yamaguchi, I, H Ikeno, K Takebe, Y Fujii, Y Okumura

COMPUTATIONAL NEUROSCIENCE: TRENDS IN RESEARCH 2004, 58-60 1097-1101, 2004 Peer-reviewed

Misc.

Design and Implementation of System Analysis Total Environment for Neuroinformatics

OKUMURA Yoshihiro, ISHIHARA Akito, USUI Shiro

IEICE technical report. Neurocomputing, 102(729) 37-42, Mar 10, 2003
Neuroinformatics research environment for vision science : Introduction to the Visiome Platform

IKENO Hidetoshi, KAMIYAMA Yoshimi, YAMAGUCHI Isao, TAKEBE Keisuke, FUJII Yasuo, OKUMURA Yoshihiro, USUI Shiro

IEICE technical report. ME and bio cybernetics, 103(489) 73-78, Dec 1, 2003
視覚系のニューロインフォマティクス研究支援環境 : VISIOME PLATFORMの概要(企画セッション「ニューロインフォーマティックスとは何か」)

池野英利, 神山斉己, 山口功, 竹部啓輔, 藤井康夫, 奥村嘉宏, 臼井支朗

電子情報通信学会技術研究報告. NC, ニューロコンピューティング, 103(490) 79-84, Dec 1, 2003
視覚系のニューロインフォマティクス研究支援環境 : VISIOME PLATFORM の概要

池野英利, 神山斉己, 山口功, 竹部啓輔, 藤井康夫, 奥村嘉宏, 臼井支朗

電子情報通信学会技術研究報告. NC, ニューロコンピューティング, 103(490) 79-84, Dec 1, 2003
Neuroinformaticsデータベース基盤システムの開発

山地一禎, 奥村嘉宏, 堺浩之, 永田憲範, 池野英利, 臼井支朗

日本神経回路学会第15回全国大会, Sep, 2005
Customizable Platform System on Neuroinformatics : XooNIps

YAMAJI Kazutsuna, SAKAI Hiroyuki, OKUMURA Yoshihiro, USUI Shiro

IEICE technical report, 105(659) 101-106, Mar 10, 2006
Neuroinformaticsデータベース基盤システムXooNIpsの紹介

山地一禎, 堺浩之, 黒崎修, 奥村嘉宏, 臼井支朗

日本神経回路学会第16回全国大会, Sep, 2006
NI-TECH: 神経科学のための共通基盤技術プラットフォーム

石金浩史, Kamiji L. N, 河北友克, 奥村嘉宏, 臼井支朗

日本神経回路学会第16回全国大会, Sep, 2006
新バージョン「XooNIps Version 3.30」の紹介

奥村嘉宏

XooNIps研究会第1回ワークショップ, Jul, 2007
XooNIps Version 3.30の紹介

奥村嘉宏

XooNIps研究会第2回ワークショップ, Jul, 2007
データベース基盤システムXooNIpsの紹介

奥村嘉宏

オープンソースカンファレンス2017 Tokyo/Fall, Oct, 2007
INCF Congress of Neuroinformatics 2008 参加報告

臼井支朗, 神山斉己, 池野英利, 藤巻則夫, 奥村嘉宏

日本神経回路学会誌 = The Brain & neural networks, 16(2) 107-111, Jun 5, 2009
Simulation Platform: Quick and easy access environment of model simulation in computational neuroscience

Ikeno H, Yamaaki T, Okumura Y, Satoh S, Kamiyama Y, Hirata Y, Inagaki K, Ishihara A, Kannon T, Usui S

Front. Neuroinform. Conference Abstract: 4th INCF Congress of Neuroinformatics, 2011
Improvement of Simulation Platform for providing reliable and easy use model simulation environment

Ikeno H, Yamazaki T, Okumura Y, Satoh S, Kamiyama Y, Hirata Y, Inagaki K, Ishihara A, Kannon T, Wagatsuma H …

Front. Neuroinform. Conference Abstract: 5th INCF Congress of Neuroinformatics, 2014
Development of an on-line simulation platform for neuroscience research

Ikeno H, Yamazaki T, Kamiyama Y, Ishihara A, Inagaki K, Hirata Y, Okumura Y, Kannon T, Satoh S, Wagatsuma H …

Front. Neurosci. Conference Abstract: Neuroinformatics 2015, Aug, 2015
Online simulation environment for computational neuroscience and data analysis

Ikeno H, Yamazaki T, Kannon T, Okumura Y, Kamiyama Y, Ishihara A, Inagaki K, Hirata Y, Satoh S, Wagatsuma H …

Neuroinformatics 2017, D1, Aug, 2017

Presentations

CBSデータ共有プラットフォームの開発と運用

奥村嘉宏

理研シンポジウム: 理研ハッカソン公開シンポジウム「令和3年度情報統合本部発足記念研究データ利活用推進支援課題研究成果報告会」, Mar 17, 2023 Invited
CBSデータ共有プラットフォームにおけるデータ・メタデータ管理方法、システム間連携に関する仕様検討および実装

奥村嘉宏

理研シンポジウム: 理研ハッカソン公開シンポジウムー令和3年度情報統合本部発足記念研究データ利活用推進支援課題キックオフ公開講演会ー, Mar 25, 2022 Invited

Professional Memberships

Jan, 2020 - Present

The Japan Neuroscience Society

Research Projects

CBSデータ共有プラットフォームにおけるデータ・メタデータ管理方法、システム間連携に関する仕様検討および実装

令和３年度研究データ利活用推進支援課題（研究DX化推進ファンド）, データ共有・公開支援, 理化学研究所, Oct, 2021 - Oct, 2022

奥村嘉宏, 下郡智美, 今泉武佐史, 田島崇

Committee Memberships

Jan, 2020 - Present

Brain Science Dictionary Committee, The Japan Neuroscience Society
Jan, 2020 - Present

Information Infrastructure Committee, The Japan Neuroscience Society

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Awards

Papers

Misc.

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