論文

2014年6月

Sequence Analysis of the Genome of Carnation (Dianthus caryophyllus L.)

DNA RESEARCH
  • Masafumi Yagi
  • ,
  • Shunichi Kosugi
  • ,
  • Hideki Hirakawa
  • ,
  • Akemi Ohmiya
  • ,
  • Koji Tanase
  • ,
  • Taro Harada
  • ,
  • Kyutaro Kishimoto
  • ,
  • Masayoshi Nakayama
  • ,
  • Kazuo Ichimura
  • ,
  • Takashi Onozaki
  • ,
  • Hiroyasu Yamaguchi
  • ,
  • Nobuhiro Sasaki
  • ,
  • Taira Miyahara
  • ,
  • Yuzo Nishizaki
  • ,
  • Yoshihiro Ozeki
  • ,
  • Noriko Nakamura
  • ,
  • Takamasa Suzuki
  • ,
  • Yoshikazu Tanaka
  • ,
  • Shusei Sato
  • ,
  • Kenta Shirasawa
  • ,
  • Sachiko Isobe
  • ,
  • Yoshinori Miyamura
  • ,
  • Akiko Watanabe
  • ,
  • Shinobu Nakayama
  • ,
  • Yoshie Kishida
  • ,
  • Mitsuyo Kohara
  • ,
  • Satoshi Tabata

21
3
開始ページ
231
終了ページ
241
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.1093/dnares/dst053
出版者・発行元
OXFORD UNIV PRESS

The whole-genome sequence of carnation (Dianthus caryophyllus L.) cv. 'Francesco' was determined using a combination of different new-generation multiplex sequencing platforms. The total length of the non-redundant sequences was 568 887 315 bp, consisting of 45 088 scaffolds, which covered 91% of the 622 Mb carnation genome estimated by k-mer analysis. The N50 values of contigs and scaffolds were 16 644 bp and 60 737 bp, respectively, and the longest scaffold was 1 287 144 bp. The average GC content of the contig sequences was 36%. A total of 1050, 13, 92 and 143 genes for tRNAs, rRNAs, snoRNA and miRNA, respectively, were identified in the assembled genomic sequences. For protein-encoding genes, 43 266 complete and partial gene structures excluding those in transposable elements were deduced. Gene coverage was similar to 98%, as deduced from the coverage of the core eukaryotic genes. Intensive characterization of the assigned carnation genes and comparison with those of other plant species revealed characteristic features of the carnation genome. The results of this study will serve as a valuable resource for fundamental and applied research of carnation, especially for breeding new carnation varieties.


リンク情報
DOI
https://doi.org/10.1093/dnares/dst053
J-GLOBAL
https://jglobal.jst.go.jp/detail?JGLOBAL_ID=201402208842431842
PubMed
https://www.ncbi.nlm.nih.gov/pubmed/24344172
Web of Science
https://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=JSTA_CEL&SrcApp=J_Gate_JST&DestLinkType=FullRecord&KeyUT=WOS:000339897900001&DestApp=WOS_CPL
URL
https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84902990201&origin=inward
ID情報
  • DOI : 10.1093/dnares/dst053
  • ISSN : 1340-2838
  • eISSN : 1756-1663
  • J-Global ID : 201402208842431842
  • PubMed ID : 24344172
  • SCOPUS ID : 84902990201
  • Web of Science ID : WOS:000339897900001

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