Yoshio Tateno - My portal

Profile Information

Affiliation: 名誉教授, 生命情報・DDBJ研究センター遺伝子機能研究室, 国立遺伝学研究所

Degree: Ph.D.(University of Texas(USA))
Doctor(Science)(Tokyo Metropolitan University)

J-GLOBAL ID: 200901013596727142
researchmap Member ID: 0000005366

External link: http://www.cib.nig.ac.jp/gfr/home.html

Research Interests

Research Areas

Education

- 1978

集団遺伝学, 生物医科学, テキサス大学大学院
- 1978

Population genetics, Biomedical Sciences, University of Texas
- 1971

Ibaraki University
- 1971

Biology, Faculty of Science, Ibaraki University

Committee Memberships

Awards

1984

日本科学技術情報センター丹羽賞学術賞

Papers

The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions

Satoshi Fukuchi, Keiichi Homma, Shigetaka Sakamoto, Hideaki Sugawara, Yoshio Tateno, Takashi Gojobori, Ken Nishikawa

NUCLEIC ACIDS RESEARCH, 37 D333-D337, Jan, 2009 Peer-reviewed
Phylogenetic construction of 17 bacterial phyla by new method and carefully selected orthologs

Tokumasa Horiike, Daisuke Miyata, Kazuo Hamada, Satoshi Saruhashi, Takao Shinozawa, Sudhir Kumar, Ranajit Chakraborty, Tomoyoshi Komiyama, Yoshio Tateno

GENE, 429(1-2) 59-64, Jan, 2009 Peer-reviewed
DDBJ dealing with mass data produced by the second generation sequencer

Hideaki Sugawara, Kazuho Ikeo, Satoshi Fukuchi, Takashi Gojobori, Yoshio Tateno

NUCLEIC ACIDS RESEARCH, 37 D16-D18, Jan, 2009 Peer-reviewed
Identification of five phospho-beta-glycosidases from Lactobacillus gasseri ATCC33323(T) cultured in lactose medium

Seiji Nagaoka, Hiroyuki Honda, Satoru Ohshima, Yasushi Kawai, Haruki Kitazawa, Yoshio Tateno, Yukiko Yamazaki, Tadao Saito

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY, 72(7) 1954-1957, Jul, 2008 Peer-reviewed
The minimum information about a genome sequence (MIGS) specification

Dawn Field, George Garrity, Tanya Gray, Norman Morrison, Jeremy Selengut, Peter Sterk, Tatiana Tatusova, Nicholas Thomson, Michael J. Allen, Samuel V. Angiuoli …

NATURE BIOTECHNOLOGY, 26(5) 541-547, May, 2008 Peer-reviewed
Development and public release of a comprehensive hepatitis virus database

Tadasu Shin-I, Yasuhito Tanaka, Yoshio Tateno, Masashi Mizokami

HEPATOLOGY RESEARCH, 38(3) 234-243, Mar, 2008 Peer-reviewed
An evolutionary origin and selection process of goldfish.

Komiyama, T, Kobayashi, H, Tateno, Y, Inoko, H, Gojobori, T, Ikeo, K

Gene, 2008 Peer-reviewed
BioCaster: Mining the Web for global health surveillance

Collier, N, Doan, S, Kawazow, A, Matsuda-Goodwin , R, Tateno, Y, Ngo, Q. – H, Dein, D, Kawtrakul, A, Takeuchi, K …

Bioinformatics, 24 2940-2941, 2008 Peer-reviewed
International collaboration among DDBJ, EMBL Bank and GenBank

Tateno, Y

53(2) 182-189, 2008
DDBJ with new system and face

H. Sugawara, O. Ogasawara, K. Okubo, T. Gojobori, Y. Tateno

Nucleic Acids Research, 36(1) D22-D24, Jan, 2008 Peer-reviewed
beta-Galactosidase, phospho-beta-galactosidase and phospho-beta-glucosidase activities in lactobacilli strains isolated from human faeces

H. Honda, F. Kataoka, S. Nagaoka, Y. Kawai, H. Kitazawa, H. Itoh, K. Kimura, N. Taketomo, Y. Yamazaki, Y. Tateno …

LETTERS IN APPLIED MICROBIOLOGY, 45(5) 461-466, Nov, 2007 Peer-reviewed
A tree of life based on protein domain organizations

Kaoru Fukami-Kobayashi, Yoshiaki Minezaki, Yoshio Tateno, Ken Nishikawa

MOLECULAR BIOLOGY AND EVOLUTION, 24(5) 1181-1189, May, 2007 Peer-reviewed
eGenomics: Cataloguing our complete genome collection III

Dawn Field, George Garrity, Tanya Gray, Jeremy Selengut, Peter Sterk, Nick Thomson, Tatiana Tatusova, Guy Cochrane, Frank Oliver Gloeckner, Renzo Kottmann …

COMPARATIVE AND FUNCTIONAL GENOMICS, 10 1-7, 2007 Peer-reviewed
DDBJ working on evaluation and classification of bacterial genes in INSDC

Hideaki Sugawara, Takashi Abe, Takashi Gojobori, Yoshio Tateno

NUCLEIC ACIDS RESEARCH, 35 D13-D15, Jan, 2007 Peer-reviewed
Exploration and grading of possible genes from 183 bacterial strains by a common protocol to identification of new genes: Gene Trek in Prokaryote Space (GTPS)

Takehide Kosuge, Takashi Abe, Toshihisa Okido, Naoto Tanaka, Masaki Hirahata, Yutaka Maruyama, Jun Mashima, Aki Tomiki, Motoyoshi Kurokawa, Ryutaro Himeno …

DNA RESEARCH, 13(6) 245-254, Dec, 2006 Peer-reviewed
Evidence standards in experimental and inferential INSDC Third Party Annotation data

Guy Cochrane, Kirsty Bates, Rolf Apweiler, Yoshio Tateno, Jun Mashima, Takehide Kosuge, Ilene Karsch Mizrachi, Susan Schafer, Michael Fetchko

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY, 10(2) 105-113, Jun, 2006 Peer-reviewed
The concept of sampling in 'omics technology

Morrison, N, Cochrane, G, Faruque, N, Tatusova, T, Tateno, Y, Hancock, D, Field, D

OMICS, 10 127-137, 2006 Peer-reviewed
DDBJ in preparation for overview of research activities behind data submissions.

Okubo, K, Sugawara, H, Gojobori, T, Tateno, Y

Nucleic Acids Res, 34 6-9, 2006 Peer-reviewed
Genomic evolution of MHC class I region in primates

K Fukami-Kobayashi, T Shiina, T Anzai, K Sano, M Yamazaki, H Inoko, Y Tateno

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 102(26) 9230-9234, Jun, 2005 Peer-reviewed
Development of a spot reliability evaluation score for DNA microarrays

Y Matsumura, K Shimokawa, Y Hayashizaki, K Ikeo, Y Tateno, J Kawai

GENE, 350(2) 149-160, May, 2005 Peer-reviewed

Misc.

An evolutionary origin and selection process of goldfish

Tomoyoshi Komiyama, Hiroyuki Kobayashi, Yoshio Tateno, Hidetoshi Inoko, Takashi Gojobori, Kazuho Ikeo

GENE, 430(1-2) 5-11, Feb, 2009
Phylogenetic construction of 17 bacterial phyla by new method and carefully selected orthologs

Tokumasa Horiike, Daisuke Miyata, Kazuo Hamada, Satoshi Saruhashi, Takao Shinozawa, Sudhir Kumar, Ranajit Chakraborty, Tomoyoshi Komiyama, Yoshio Tateno

GENE, 429(1-2) 59-64, Jan, 2009
The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions

Satoshi Fukuchi, Keiichi Homma, Shigetaka Sakamoto, Hideaki Sugawara, Yoshio Tateno, Takashi Gojobori, Ken Nishikawa

NUCLEIC ACIDS RESEARCH, 37 D333-D337, Jan, 2009
DDBJ dealing with mass data produced by the second generation sequencer

Hideaki Sugawara, Kazuho Ikeo, Satoshi Fukuchi, Takashi Gojobori, Yoshio Tateno

NUCLEIC ACIDS RESEARCH, 37 D16-D18, Jan, 2009
BioCaster: detecting public health rumors with a Web-based text mining system

Nigel Collier, Son Doan, Ai Kawazoe, Reiko Matsuda Goodwin, Mike Conway, Yoshio Tateno, Quoc-Hung Ngo, Dinh Dien, Asanee Kawtrakul, Koichi Takeuchi …

BIOINFORMATICS, 24(24) 2940-2941, Dec, 2008
Identification of five phospho-beta-glycosidases from Lactobacillus gasseri ATCC33323(T) cultured in lactose medium

Seiji Nagaoka, Hiroyuki Honda, Satoru Ohshima, Yasushi Kawai, Haruki Kitazawa, Yoshio Tateno, Yukiko Yamazaki, Tadao Saito

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY, 72(7) 1954-1957, Jul, 2008
The minimum information about a genome sequence (MIGS) specification

Dawn Field, George Garrity, Tanya Gray, Norman Morrison, Jeremy Selengut, Peter Sterk, Tatiana Tatusova, Nicholas Thomson, Michael J. Allen, Samuel V. Angiuoli …

NATURE BIOTECHNOLOGY, 26(5) 541-547, May, 2008
Development and public release of a comprehensive hepatitis virus database

Tadasu Shin-I, Yasuhito Tanaka, Yoshio Tateno, Masashi Mizokami

HEPATOLOGY RESEARCH, 38(3) 234-243, Mar, 2008
Rice annotation project database (RAP-DB)

Rice Annotation Project

Nucleic Acids Res, 36 1028-1033, 2008
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

Chisato Yamasaki, Katsuhiko Murakami, Yasuyuki Fujii, Yoshiharu Sato, Erimi Harada, Jun-Ichi Takeda, Takayuki Taniya, Ryuichi Sakate, Shingo Kikugawa, Makoto Shimada …

NUCLEIC ACIDS RESEARCH, 36 D793-D799, Jan, 2008
DDBJ with new system and face

H. Sugawara, O. Ogasawara, K. Okubo, T. Gojobori, Y. Tateno

NUCLEIC ACIDS RESEARCH, 36 D22-D24, Jan, 2008
beta-Galactosidase, phospho-beta-galactosidase and phospho-beta-glucosidase activities in lactobacilli strains isolated from human faeces

H. Honda, F. Kataoka, S. Nagaoka, Y. Kawai, H. Kitazawa, H. Itoh, K. Kimura, N. Taketomo, Y. Yamazaki, Y. Tateno …

LETTERS IN APPLIED MICROBIOLOGY, 45(5) 461-466, Nov, 2007
A tree of life based on protein domain organizations

Kaoru Fukami-Kobayashi, Yoshiaki Minezaki, Yoshio Tateno, Ken Nishikawa

MOLECULAR BIOLOGY AND EVOLUTION, 24(5) 1181-1189, May, 2007
DDBJ working on evaluation and classification of bacterial genes in INSDC

Hideaki Sugawara, Takashi Abe, Takashi Gojobori, Yoshio Tateno

NUCLEIC ACIDS RESEARCH, 35 D13-D15, Jan, 2007
Exploration and grading of possible genes from 183 bacterial strains by a common protocol to identification of new genes: Gene Trek in Prokaryote Space (GTPS)

Takehide Kosuge, Takashi Abe, Toshihisa Okido, Naoto Tanaka, Masaki Hirahata, Yutaka Maruyama, Jun Mashima, Aki Tomiki, Motoyoshi Kurokawa, Ryutaro Himeno …

DNA RESEARCH, 13(6) 245-254, Dec, 2006
Evidence standards in experimental and inferential INSDC Third Party Annotation data

Guy Cochrane, Kirsty Bates, Rolf Apweiler, Yoshio Tateno, Jun Mashima, Takehide Kosuge, Ilene Karsch Mizrachi, Susan Schafer, Michael Fetchko

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY, 10(2) 105-113, Jun, 2006
Cochrane, G., Bates, K., Apweiler, R., Tateno, Y., Mashima, J., Kosuge, T., Mizrachi, I., Schafer, S. and Fetchko, M.

Morrison, N, Cochrane, G, Faruque, N, Tatusova, T, Tateno, Y, Hancock, D, Field, D, Cochrane, G, Bates, K, Apweiler, R …

OMICS, 10 127-137, 2006
DDBJ in preparation for overview of research activities behind data submissions. Nucleic Acids

Okubo, K, Sugawara, H, Gojobori, T, Tateno, Y

Nucleic Acids Res, 34 6-9, 2006
Genomic evolution of MHC class I region in primates

K Fukami-Kobayashi, T Shiina, T Anzai, K Sano, M Yamazaki, H Inoko, Y Tateno

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 102(26) 9230-9234, Jun, 2005
Genomic evolution of MHC class I region in primates

K Fukami-Kobayashi, T Shiina, T Anzai, K Sano, M Yamazaki, H Inoko, Y Tateno

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 102(26) 9230-9234, Jun, 2005

Books and Other Publications

Quantum Bio-Informatics Evolution of MHC class I complex region with special reference to fragmentary LINE sequences

2008 (ISBN: 9789812793164)
Quantum Bio-Informatics

World Scientific, 2008 (ISBN: 9789812793164)
バイオインフォマティクス

裳華房, 2008 (ISBN: 9784785387853)
DDBJの利用法「国際塩基配列データファイルの構造」

舘野義男

共立出版, 2005
予防医学事典国際DNAデータベース

舘野義男

朝倉書店, 2005
細胞生物学事典「バイオインフォマティクス」、「プロテオーム」

舘野義男

朝倉書店, 2005
Proc. the 15th International Conference on Genome and Informatics 2004 Construction of H-invitational database CIB-DDBJ flat file server

2004
ゲノミクス・プロテオミクスの新展開マイクロアレイ遺伝子発現データベース

池尾一穂, 舘野義男

エヌ・ティー・エス, 2004
ゲノミックスプロテオミックスの新展開マイクロアレイ遺伝子発現データベース

池尾一穂, 舘野義男

NTS出版, 2004
Populations and Genetics DNA Data Bank of Japan as an indispensable public database.

2003
DNA Data Bank of Japan as an Indispensable Public Database

Populations and Genetics, Marinus Nijihoff Pablishers, Leiden/Boston, 2003
DNA Data Bank of Japan as an Indispensable Public Database In:Populations and Genetics

Martinus Nijhoff Publishers, Leiden/Boston, 2003
ゲノム医科学がわかる DNAデータバンクとゲノム研究

舘野義男, 五條堀孝

羊土社, 2001
Currents in Computational Molecular Biology A new file format and tools for the large-scale data submission to DNA Data Bank of Japan (DDBJ

2000

Presentations

A tree of life constructed by genome-wide information

Y. Tateno

BioEco2007 International Conference, Jun 26, 2007 Invited
A tree of life constructed by domain organizations of proteins

Y. Tateno

Biodiversity Workshop, Jun 6, 2007 Invited
Molecular population genetics

Tateno, Y

The 6th China-Japan-Korea Bioinformatics Training Course, Mar 27, 2007
Genomic analysis of MHC genes in primates

Tateno, Y

ICQBIC2007, Mar 14, 2007 Invited
Bioinformatics

Tateno, Y

Jan 11, 2007
分子系統学、講義ならびに実習

舘野義男, 小見山智義

Nov 13, 2006
Genomic evolution of MHC class I region in primates

Tateno, Y

Oct 31, 2006
An evolutionary origin and the selction process of goldfish by the mtDNA analysis

Komiyama, T, Otake, A, Ikeo, K, Tateno, Y, Inoko, H, Gojobori, T

Marine Genonics, Oct 27, 2006
Search for the evolution of gap junction

Takaku, Y, Hayakawa, S, Wolf, A, Svensson, L, David, C, Fujisawa, T, Ikeo, K, Tateno, Y, Gojoboroi, T

Marine Genomics, Oct 27, 2006
Genomic evolution of MHC class I region in primates

Tateno, Y

Sep 22, 2006
Evaluation and Classification of Bacterial Genes

Tateno, Y

The 15th Korea Genome Organization Meeting, Sep 21, 2006 Invited
DDBJ activities of genome databases and evaluation of bacterial gene in INSDC

Tateno, Y

eGenomics, Sep 11, 2006 Invited
Evolution of LINEs and its implication about MHC and primate divergences

Tateno, Y

SMBE2006, May 24, 2006
発現解析データベースCIBEXについて

舘野義男

Feb 4, 2006
「ゲノムからみた霊長類の進化」

舘野義男

Dec 20, 2005
Novel mammalian microRNA targets identified by an extensive transcriptome-wide affinity screening

Roberto Barrero, Takuro Tamura, Hitomi Sakurai, Shiho Hayakawa, Yoshio Tateno, Kazuho Ikeo, Tadashi Imanishi, Takashi Gojobori

28th Annual Meeting of the Molecular Biology Society of Japan, Dec 7, 2005
Development of method for construction of phylogenetic tree with massive orthologs

堀池徳祐, 宮田大輔, 濱田一男, 猿橋智, 篠沢隆雄, 舘野義男

28th Annual Meeting of the Molecular Biology Society of Japan, Dec 7, 2005
Introduction of DDBJ activity: Contribution to the research of information biology

真島淳, 舘野義男, 斎藤成也, 大久保公策, 菅原秀明

28th Annual Meeting of the Molecular Biology Society of Japan, Dec 7, 2005
Construction of IS database targeted at eubacterial and archaeal genomes

小菅武英, 阿部貴志, 舘野義男, 菅原秀明

28th Annual Meeting of the Molecular Biology Society of Japan, Dec 7, 2005
Genomic evolution of MHC class I region in primate

Tateno, Y

Shanghai Center for Bioinformation Technology, Nov 15, 2005

Professional Memberships

Works

CIBEXデータベース

舘野義男, 池尾一穂

2002 Database

Research Projects

現地共同体制による進化基礎情報の収集と調査

科学研究費補助金, 2004 - 2008
霊長類MHCクラスⅠならびにMIC遺伝子群のゲノム生物学的解析

共同研究, 2004 - 2006
molecular evolution of genes and species, construction of biological databases by international collaboration molecular phylogeny and evolution of genes and species, construction of DNA and gene expression databases

Basic Research Promotion Service for Health and Medical Field, 1973

Industrial Property Rights

特願2005-330761 「コンピュータによる径路関係探索法」

舘野義男, 堀池徳祐, 宮田大輔, 猿橋智