Katsumi Sakata

Profile Information

Affiliation: 教授, 工学部生命情報学科, 前橋工科大学
: 協力研究員, 放射線医学総合研究所

Degree: 博士(工学)(慶応義塾大学)

J-GLOBAL ID: 200901047661229599
researchmap Member ID: 0000200284

External link: https://www.acoffice.jp/mithp/KgApp?resId=S000036

Research Interests

Research Areas

Education

Apr, 1979 - Mar, 1981

Keio University
Apr, 1975 - Mar, 1979

Keio University

Papers

An information-theoretic model suggesting genetic regulatory system degradation under climate change

Katsumi Sakata, Toshiyuki Saito, Hajime Ohyanagi, Ramesh Katam, Setsuko Komatsu

Physics Open, 6, Feb 1, 2021
An Information-Theoretic Model for Managing Predator–Prey Ecosystems Facing Climate Changes

Katsumi Sakata, Ramesh Katam, Toshiyuki Saito, Hajime Ohyanagi, Setsuko Komatsu

International Journal on Advances in Life Sciences, 12 10-15, Jun, 2020 Peer-reviewedInvitedLead authorCorresponding author
Proteomics, physiological, and biochemical analysis of cross tolerance mechanisms in response to heat and water stresses in soybean

Katam R, Shokri S, Murthy N, Singh SK, Suravajhala P, Khan MN, Bahmani M, Sakata K, Reddy KR

PLOS ONE, Jun, 2020 Peer-reviewed
An integrated approach of proteomics and computational genetic modification effectiveness analysis to uncover the mechanisms of flood tolerance in soybeans

Xin Wang, Katsumi Sakata, Setsuko Komatsu

International Journal of Molecular Sciences, 19(5), May 1, 2018 Peer-reviewed
Integration of gel-based and gel-free proteomic data for functional analysis of proteins through Soybean Proteome Database

Setsuko Komatsu, Xin Wang, Xiaojian Yin, Yohei Nanjo, Hajime Ohyanagi, Katsumi Sakata

JOURNAL OF PROTEOMICS, 163 52-66, Jun, 2017 Peer-reviewed
An Integrated Computational Approach for Plant-Based Protein Tyrosine Phosphatase Non-Receptor Type 1 Inhibitors

Shabana Bibi, Katsumi Sakata

CURRENT COMPUTER-AIDED DRUG DESIGN, 13(4) 319-335, 2017 Peer-reviewed
Proteomic analysis of soybean root exposed to varying sizes of silver nanoparticles under flooding stress

Ghazala Mustafa, Katsumi Sakata, Setsuko Komatsu

JOURNAL OF PROTEOMICS, 148 113-125, Oct, 2016 Peer-reviewed
Loss of variation of state detected in soybean metabolic and human myelomonocytic leukaemia cell transcriptional networks under external stimuli

Katsumi Sakata, Toshiyuki Saito, Hajime Ohyanagi, Jun Okumura, Kentaro Ishige, Harukazu Suzuki, Takuji Nakamura, Setsuko Komatsu

SCIENTIFIC REPORTS, 6 35946, Oct, 2016 Peer-reviewed
Quantitative proteomic analysis of post-flooding recovery in soybean root exposed to aluminum oxide nanoparticles

Farhat Yasmeen, Naveed Iqbal Raja, Ghazala Mustafa, Katsumi Sakata, Setsuko Komatsu

JOURNAL OF PROTEOMICS, 143 136-150, Jun, 2016 Peer-reviewed
Comparative leaf proteomics of drought-tolerant and -susceptible peanut in response to water stress

Ramesh Katam, Katsumi Sakata, Prashanth Suravajhala, Tibor Pechan, Devaiah M. Kambiranda, Karamthot Sivasankar Naik, Baozhu Guo, Sheikh M. Basha

JOURNAL OF PROTEOMICS, 143 209-226, Jun, 2016 Peer-reviewed
Insights into the proteomic response of soybean towards Al2O3, ZnO, and Ag nanoparticles stress

Zahed Hossain, Ghazala Mustafa, Katsumi Sakata, Setsuko Komatsu

JOURNAL OF HAZARDOUS MATERIALS, 304 291-305, Mar, 2016 Peer-reviewed
Gel-free/label-free proteomic analysis of root tip of soybean over time under flooding and drought stresses

Xin Wang, MyeongWon Oh, Katsumi Sakata, Setsuko Komatsu

JOURNAL OF PROTEOMICS, 130 42-55, Jan, 2016 Peer-reviewed
Current Status of Computer-Aided Drug Design for Type 2 Diabetes

Shabana Bibi, Katsumi Sakata

Current Computer-Aided Drug Design, 12(2) 167-177, 2016 Peer-reviewed
Proteomic analysis of flooded soybean root exposed to aluminum oxide nanoparticles

Ghazala Mustafa, Katsumi Sakata, Setsuko Komatsu

JOURNAL OF PROTEOMICS, 128 280-297, Oct, 2015 Peer-reviewed
Proteomic Analysis of Phosphoproteins in the Rice Nucleus During the Early Stage of Seed Germination

Ming Li, Xiaojian Yin, Katsumi Sakata, Pingfang Yang, Setsuko Komatsu

JOURNAL OF PROTEOME RESEARCH, 14(7) 2884-2896, Jul, 2015 Peer-reviewed
Proteomic study on the effects of silver nanoparticles on soybean under flooding stress

Ghazala Mustafa, Katsumi Sakata, Zahed Hossain, Setsuko Komatsu

JOURNAL OF PROTEOMICS, 122 100-118, Jun, 2015 Peer-reviewed
Proteomic analysis of canola root inoculated with bacteria under salt stress

Farzad Banaei-Asl, Au Bandehagh, Ebrahim Dorani Uliaei, Davoud Farajzadeh, Katsumi Salzata, Ghazala Mustafa, Setsuko Komatsu

JOURNAL OF PROTEOMICS, 124 88-111, Jun, 2015 Peer-reviewed
Proteomic analysis of soybean hypocotyl during recovery after flooding stress

Mudassar Nawaz Khan, Katsumi Saizata, Setsulzo Komatsu

JOURNAL OF PROTEOMICS, 121 15-27, May, 2015 Peer-reviewed
‘Omics’ techniques and their use to identify how soybean responds to flooding

Komatsu S, Sakata K, Nanjo Y

Journal of Analytical Science and Technology, 6 9, Mar, 2015 Peer-reviewed
Advances in proteomics and bioinformatics in agriculture research and crop improvement

Keyura Katam, Khoranhlai Anjuli Jones, Katsumi Sakata

Journal of Proteomics & Bioinformatics, 8 3, Feb, 2015 Peer-reviewed

Presentations

119

冠水下のダイズの生長に及ぼす植物由来煙水の影響の大規模オミクス解析－代謝マップ上への画像情報処理の融合

手林大介, 海野聖斗, 坂田克己, 今井裕之, 上村松生, 小松節子

第42回日本分子生物学会年会（1P-0056）, Dec, 2019
ストレス下のダイズのオミクス統合ネットワークから展開する技術

小松節子, 坂田克己

日本プロテオーム学会2019年大会, Jul, 2019
A Mathematical Model for Predator–Prey Ecosystems Facing Climate Changes

SAKATA Katsumi

BIOTECHNO 2019 : The Eleventh International Conference on Bioinformatics, Biocomputational Systems and Biotechnologies (awarded), Jun, 2019
気候変動下の捕食者-被食者生態系の数理モデル構築とシミュレーション

坂田克己

日本応用数理学会 2019年研究部会連合発表会, Mar, 2019
Toward generalized interpretation over human transcriptional and soybean metabolic systems - a digital-physical approach for environmental responses

Sakata K, Ohyanagi H, Saito T, Komatsu S

Nov, 2018
Information flow analysis of genetic regulatory systems

Sakata K, Saito T, Ohyanagi H, Asahi S, Sato D, Morikawa Y, Komatsu S

SIAM Annual Meeting, Jul, 2018
ダイズプロテオームデータベース：電気泳動を基盤にした手法と質量分析計を基盤にした手法から得られたタンパク質データの統合

坂田克己, 大柳一, 杉本和彦, 小松節子

トーゴーの日シンポジウム, Oct, 2017
生物相互作用ネットワークの動特性解析

坂田克己, 新堀航大, 大柳一, 朝日頌, 佐藤大輝, 森川雄太, 齋藤俊行

日本応用数理学会年会, Sep, 2017
Information transfer-model interprets loss of control capability in biological systems under external stimuli

Sakata K, Ohyanagi H, Saito T

The IV International AMMCS Interdisciplinary Conference (in Waterloo, Canada), Aug, 2017
A stability analysis of the biological networks, transcriptional network, neural circuit and ecosystem

Sakata K

SIAM Conferences on the Life Sciences (in Boston), Jul, 2016
生命系ネットワークの安定性に関する解析研究

山下祥平, 藤枝舜祐, 坂田克己

情報処理学会第78回全国大会，4Z-01, Mar, 2016
汎生物ネットワーク的な動特性の解析

坂田克己, 大柳一, 齋藤俊行

日本応用数理学会研究部会連合発表会, Mar, 2015
A characteristic structure in metabolic network induces self-organization responding to flooding stress in soybean

Sakata K

BHI 2013 in Maebashi, B251, Oct, 2013
A Method for Estimating Plant Gene-network Based on Expression Profile and Genomic Information

昇博也, 三井重之, 長村吉晃, ANTONIO Baltazar A, 小松節子, 西林双龍, 渡辺克昭, 坂田克己

情報処理学会研究報告, Dec 21, 2006
時系列データからの植物遺伝子ネットワークのロバストな推定

三井重之, 昇博也, 西林双龍, 長村吉晃, ANTONIO Baltazar A, 小松節子, 渡辺克昭, 坂田克己

情報科学技術フォーラム, Aug 21, 2006
時系列発現データによるタンパク質相互作用解析手法の検討（共著）

第2回植物プロテオーム研究の最前線シンポジウム、ポスター発表, 2006
The RGP rice genome annotation database（共著）

International Rice Functional Genomics Meeting in Tucson, Nov. 15-17, 2004
遺伝子発現ネットワーク推定システムの構築（共著）

第27回日本分子生物学会年会, 2004
コンピュータによるイネ遺伝子の機能予測システム（GFSelector）

第5回ミレニアム植物科学研究報告会（21世紀に期待される植物科学研究－ミレニアム植物科学研究プロジェクトの総括と展望－）、ポスター発表, 2004
Rice Annotation Database (RAD): a Contig-oriented Database for Map-based Informatics（共著）

7th International Congress of Plant Molecular Biology, 2003

Books and Other Publications

Plant proteomics: from genome sequencing to proteome databases and repositories.

Sakata K, Komatsu S

Methods in molecular biology (Clifton, N.J.) 1072 29-42, 2014
Advances in proteomics research for peanut genetics and breeding in peanut. In Mallikarjuna N. et al. eds. Genetics, genomics and breeding of peanuts.

Katam R, Gottschalk V, Survajahala P, Brewster G, Paxton P, Sakata K

CRC Press, Florida, 2014
Mining knowledge from omics data. In Kishor P.B.K. et al. eds. Agricultural bioinformatics.

Sakata K, Nakamura T, Komatsu S

Springer, New York, 2014

Research Projects

汎ネットワークな生命系の秩序形成

科研費（基盤C）代表, Apr, 2016 - Mar, 2020
オミクス統合シミュレィションを基軸にしたダイズ出芽期に耐湿性を付与する技術の開発

科研費（基盤B）分担, Apr, 2015 - Mar, 2018
汎ネットワーク初期化機構の探索研究

科研費（挑戦的萌芽研究）代表, Apr, 2014 - Mar, 2017

Professional Memberships

Misc.

ダイズ代謝系シミュレイションモデルは耐湿性関連遺伝子の絞り込みに有効である

小松節子, 坂田克己, 中村卓司, MUSTAFA Gazara

農研機構次世代作物開発研究センター成果情報(Web), 2016, 2016
ダイズプロテオームデータベースは湿害関連タンパク質の検出に有用である

小松節子, 中村卓司, 中山則和, 平賀勧, 山本亮, 島村聡, 南條洋平, 大柳一, 坂田克己

農研機構作物研究所成果情報(Web), 2008, 2008
ダイズ出芽時の冠水処理により変動する遺伝子群のトランスクリプトーム解析

南條洋平, 山本亮, 橋口晶子, 島村聡, 中村卓司, 三上陽司, 湯野川春信, 坂田克己, 小松節子

生化学, 4P-1249, 2008
イネゲノム情報を基盤としたアノテーションシステム(RiceGAAS/GFSelector):遺伝子オントロジー自動解析を含む機能拡充

坂田克己, 伊川浩司, 渡辺博之, 芦川育夫, 清水裕司, 堀内郁雄, ANTONIO Baltazar A, 沼寿隆, 長村吉晃, 松本隆

生化学, 2P-1381, 2007
A Method for Estimating Plant Gene-network Based on Expression Profile and Genomic Information

NOBORI Hiroya, MITSUI Shigeyuki, NAGAMURA Yoshiaki, ANTONIO Baltazar A., KOMATSU Setsuko, NISHIBAYASHI Soryu, WATANABE Katsuaki, SAKATA Katsumi

IPSJ SIG Notes, 2006(135) 143-147, Dec 22, 2006
イネの遺伝子の発現に係わるCpGアイランド様ゲノム領域

芦川育夫, 沼寿隆, 坂田克己

作物研究成果情報, 2005 158-159, Nov 30, 2006
H_018 A Robust Estimation for Plant Gene Network Based on Time-course Expression Profile

Mitsui Shigeyuki, Noborri Hiroya, Nishibayashi Soryu, Nagamura Yoshiaki, Baltazar A. Antonio, Komatsu Setsuko, Watanabe Katsuaki, Sakata Katsumi

5(2) 429-430, Aug 21, 2006
Rice 9000 cDNA microarray analysis of genes expressed in early stage after inoculation with rice blast fungus

T Hibi, T Iwai, K Kuroda, K Sasaki, J Yazaki, M Ishikawa, F Fujii, K Shimbo, Z Shimatani, Y Nagata …

PLANT AND CELL PHYSIOLOGY, 45 S141-S141, 2004
イネゲノム自動アノテーションシステムRiceGAASの現状:2003

沼寿隆, 長村吉晃, BALTAZAR A A, 井戸沼淳子, 坂田克己, 清水裕司, 堀内郁雄, 伊川浩司, 松本隆

日本分子生物学会年会プログラム・講演要旨集, 26th 676, Nov 25, 2003
Transcriptomic analysis of metabolic changes by phosphorus stress in rice plant roots

J Wasaki, R Yonetani, S Kuroda, T Shinano, J Yazaki, F Fujii, K Shimbo, K Yamamoto, K Sakata, T Sasaki …

PLANT CELL AND ENVIRONMENT, 26(9) 1515-1523, Sep, 2003
Analysis of Gene Expression in Rice Plant during Blast Infection Using a Rice cDNA Microarray(Abstracts of the Papers Presented at the 2003 Annual Meeting in Tokyo)

Annals of the Phytopathological Society of Japan, 69(3) 233-233, Aug 25, 2003
DNAマイクロアレイによるキチンオリゴ糖エリシター応答性イネ遺伝子の解析

秋本千春, デイロバート, 坂田克己, 矢崎潤史, 中村桂子, 藤井文子, 真保佳納子, 山本公子, 佐々木卓治

農業生物資源研究所主要な研究成果, 2002, 2003
Bioinformatics of rice chromosome 1

SHIBATA M., IDONUMA A., MASUKAWA M., ANTONIO Baltazar, ITO Y., YAMAMOTO M., NAMIKI N., MATSUMOTO T., SAKATA K., SASAKI T.

4 275-275, Aug 26, 2002
Global gene expression analysis of rice seedlings under cold-stress conditions

SUGAHARA S., YAMNADA T., YAZAKI J., FUJII F., SHIMBO K., YAMAMOTO K., SAKATA K., SASAKI T., KISHIMOTO N., KIKUCHI S. …

4 104-104, Aug 26, 2002
Microarray analysis of gene expression during booting stages in near-isogenic lines of rice

SATO Y., MATSUBA S., MURAKAMI T., KAWAGUCHI K., FUNATSUKI H., YAZAKI J., FUJII F., SHIMBO K., SHIMATANI Z., NAGATA Y. …

4 105-105, Aug 26, 2002
(83)Analysis of Ethylene Signal-ing in Rice Plants Using the 9000 cDNA Microarray

Hibi T., Sasaki K., Kosugi S., Mie T., Hiraga S., Itoh H., Matui H., Yazaki J., Fujii F., Shimbo K. …

Annals of the Phytopathological Society of Japan, 68(2) 178-178, Aug 25, 2002
イネ第1染色体配列解読の終了

松本隆, 片寄裕一, 水野浩志, 沼寿隆, 坂田克己

農業生物資源研究所主要な研究成果, 2001 30-31, May, 2002
Genomic structure and characteristics of rice chromosome

IDONUMA A., MASUKAWA M., ANTONIO B. A., SHIBATA M., ITO Y., MATSUMOTO T., SAKATA K., SASAKI T.

4(1) 77-77, Mar 30, 2002
Time course profile of cDNA array for the salt tolerant variety Pokkali

AKIHOSHI M., ENDO N., YOSHIDA K., YAZAKI J., NAKAMURA K., FUJII F., SHIMBO K., SHIMATANI Z., NAGATA Y., HASHIMOTO A. …

4(1) 49-49, Mar 30, 2002
Molecular basis of environment sensitive genetic male sterility in rice II. Cluster analysis of gene expression patterns in response to cold treatment at booting stage as revealed by cDNA microarray method

KAWAURA K., YAZAKI J., FUJII F., SHIMBO K., SHIMATANI Z., NAGATA Y., HASHIMOTO A., OHTA T., SATO Y., HONDA S. …

4(1) 48-48, Mar 30, 2002

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