2008年2月
Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes
NUCLEIC ACIDS RESEARCH
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- 巻
- 36
- 号
- 3
- 開始ページ
- 861
- 終了ページ
- 871
- 記述言語
- 英語
- 掲載種別
- DOI
- 10.1093/nar/gkm1102
- 出版者・発行元
- OXFORD UNIV PRESS
Understanding regulatory mechanisms of protein synthesis in eukaryotes is essential for the accurate annotation of genome sequences. Kozak reported that the nucleotide sequence GCCGCC (A/G)CCAUGG (AUG is the initiation codon) was frequently observed in vertebrate genes and that this 'consensus' sequence enhanced translation initiation. However, later studies using invertebrate, fungal and plant genes reported different 'consensus' sequences. In this study, we conducted extensive comparative analyses of nucleotide sequences around the initiation codon by using genomic data from 47 eukaryote species including animals, fungi, plants and protists. The analyses revealed that preferred nucleotide sequences are quite diverse among different species, but differences between patterns of nucleotide bias roughly reflect the evolutionary relationships of the species. We also found strong biases of A/G at position 23, A/C at position 22 and C at position +5 that were commonly observed in all species examined. Genes with higher expression levels showed stronger signals, suggesting that these nucleotides are responsible for the regulation of translation initiation. The diversity of preferred nucleotide sequences around the initiation codon might be explained by differences in relative contributions from two distinct patterns, GCCGCCAUG and AAAAAAAUG, which implies the presence of multiple molecular mechanisms for controlling translation initiation.
- リンク情報
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- DOI
- https://doi.org/10.1093/nar/gkm1102
- CiNii Articles
- http://ci.nii.ac.jp/naid/80019533109
- PubMed
- https://www.ncbi.nlm.nih.gov/pubmed/18086709
- Web of Science
- https://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=JSTA_CEL&SrcApp=J_Gate_JST&DestLinkType=FullRecord&KeyUT=WOS:000253491300021&DestApp=WOS_CPL
- ID情報
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- DOI : 10.1093/nar/gkm1102
- ISSN : 0305-1048
- eISSN : 1362-4962
- CiNii Articles ID : 80019533109
- PubMed ID : 18086709
- Web of Science ID : WOS:000253491300021