OKAMOTO, Yuko

J-GLOBAL         Last updated: May 8, 2019 at 04:18
 
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Name
OKAMOTO, Yuko
E-mail
okamototb.phys.nagoya-u.ac.jp
URL
https://www.phys.nagoya-u.ac.jp/en/list/HPtemplate/HPtemplate_Okamoto_e.pdf
Affiliation
Nagoya University
Section
Graduate School of Science Division of Material Science
Job title
Professor
Degree
Bachelor of Science - Master of Science (B.S.-M.S.)(Brown University), Doctor of Philosophy (Ph.D.)(Cornell University)
Research funding number
70185487
ORCID ID
0000-0002-7083-2326

Academic & Professional Experience

 
Sep 1984
 - 
Mar 1986
Postdoctoral Research Associate, Department of Physics, Virginia Polytechnic Institute and State University, USA
 
Apr 1986
 - 
May 1993
Assistant Professor, Department of Physics, Nara Women's University
 
Apr 1992
 - 
Jan 1993
Visiting Scientist, Stanford Linear Accelerator Center, Stanford University, USA
 
May 1993
 - 
Mar 1995
Associate Professor, Department of Physics, Nara Women's University
 
Mar 1994
 - 
May 1994
Visiting Associate Professor, University of Minnesota at Duluth, USA
 

Published Papers

 
N. Nishikawa, Y. Sakae, T. Gouda, Y. Tsujimura, and Y. Okamoto
Biophysical Journal   116 781-790   Mar 2019   [Refereed]
Itoh Yukihiro, Nakashima Yusuke, Tsukamoto Shuichiro, Kurohara Takashi, Suzuki Miki, Sakae Yoshitake, Oda Masayuki, Okamoto Yuko, Suzuki Takayoshi
SCIENTIFIC REPORTS   9    Jan 2019
Tachi Yuhei, Sato Sota, Yoneya Makoto, Fujita Makoto, Okamoto Yuko
CHEMICAL PHYSICS LETTERS   714 185-189   Jan 2019
Y. Sakae, J. E. Straub, and Y. Okamoto
Journal of Computational Chemistry   40 475-481   Nov 2018   [Refereed]
Tachi Yuhei, Okamoto Yuko, Okumura Hisashi
JOURNAL OF CHEMICAL PHYSICS   149(13)    Oct 2018

Misc

 
Tachi Yuhei, Okamoto Yuko, Okumura Hisashi
JOURNAL OF CHEMICAL PHYSICS   149(13)    Oct 2018
Ito Shingo, Fedorov Dmitri G., Okamoto Yuko, Irle Stephan
COMPUTER PHYSICS COMMUNICATIONS   228 152-162   Jul 2018
Tsukamoto Shuichiro, Sakae Yoshitake, Itoh Yukihiro, Suzuki Takayoshi, Okamoto Yuko
JOURNAL OF CHEMICAL PHYSICS   148(12)    Mar 2018
Kawano Shin, Tamura Yasushi, Kojima Rieko, Bala Siqin, Asai Eri, Michel Agnes H., Kornmann Benoit, Riezman Isabelle, Riezman Howard, Sakae Yoshitake, Okamoto Yuko, Endo Toshiya
JOURNAL OF CELL BIOLOGY   217(3) 959-974   Mar 2018

Books etc

 
Optimizations of protein force fields in Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes
Yoshitake Sakae and Yuko Okamoto (edited by Adam Liwo) (Part:Joint Work)
Springer Berlin Heidelberg   2019   ISBN:978-3319958422
Book Subtitle
From Bioinformatics to Molecular Quantum Mechanics
The second edition
Conformational Dynamics of Oligosaccharides Characterized by Paramagnetism-Assisted NMR Spectroscopy in Conjunction with Molecular Dynamics Simulation, in Biochemical Roles of Eukaryotic Cell Surface Macromolecules
Ying Zhang, Takumi Yamaguchi, Tadashi Satoh, Maho Vagi-Utsumi, Yukiko Kamiya, Yoshitake Sakae, Yuko Okamoto, and Koichi Kato (edited by Abhijit Chakrabarti and Avadhesha Surolia) (Part:Joint Work)
Springer   2015   ISBN:978-3-319-11279-4
Optimizations of protein force fields in Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes
Yoshitake Sakae and Yuko Okamoto (edited by Adam Liwo) (Part:Joint Work)
Springer Berlin Heidelberg   2014   ISBN:978-3-642-28553-0
Book Subtitle
From Bioinformatics to Molecular Quantum Mechanics
Protein folding simulations by generalized-ensemble algorithms, in Advances in Experimental Medicine and Biology
Takao Yoda, Yuji Sugita, and Yuko Okamoto (edited by Ke-li Han, Xin Zhang, and Ming-jun Yang) (Part:Joint Work)
Springer, Berlin   Dec 2013   ISBN:978-3-319-02970-2
Enhanced sampling algorithms, in Biomolecular Simulations: Methods and Protocols
Ayori Mitsutake, Yoshiharu Mori, and Yuko Okamoto (edited by L. Monticelli and E. Salonen) (Part:Joint Work)
Humana Press   Oct 2013   

Conference Activities & Talks

 
Enhanced sampling techniques to study fluctuations and dynamics in molecular systems [Invited]
Yuko OKAMOTO
Himakajima Workshop 2019 Spring   21 Mar 2019   
Enhanced sampling techniques to study fluctuations and dynamics in molecular systems [Invited]
Yuko OKAMOTO
Telluride Workshop: The Role of Fluctuations and Dynamics in Biomolecular Function   7 Jan 2019   
Classical and quantum simulations in generalized ensemble [Invited]
Yuko OKAMOTO
Energy Landscapes 2018   2 Sep 2018   
Enhanced sampling methods for spin systems and biomolecular systems [Invited]
Yuko OKAMOTO
XXX IUPAP Conference on Computational Physics, CCP2018   29 Jul 2018   
Generalized-ensemble simulations of biological molecular assembly and artificial molecular assembly [Invited]
Yuko OKAMOTO
The 6th International Symposium on Dynamical Ordering of Biological Systems for Creation of Integrated Functions   20 Jan 2018   

Research Grants & Projects

 
Prediction of protein-ligand binding structures by generalized-ensemble simulations
Takeda Pharmaceutical Company: Funded Research from Enterprise
Project Year: Apr 2011 - Mar 2014    Investigator(s): Yuko OKAMOTO
Development of molecular simulation methods that enhance structural fluctuations and free energy calculations
Grants-in-Aid for Scientific Research
Project Year: Oct 2008 - Mar 2013
Development of new energy functions for molecular simulations of protein systems
Grants-in-Aid for Scientific Research
Project Year: Apr 2008 - Mar 2009
Study of protein folding mechanism by generalized-ensemble algorithms
Grants-in-Aid for Scientific Research
Project Year: Apr 2003 - Mar 2008
Development of simulaton algorithms for the first-principles prediction of three-dimensional structures of proteins
Project Year: Apr 1998 - Mar 2003    Investigator(s): Yuko OKAMOTO