論文

査読有り
2016年9月

Multiscale enhanced sampling for protein systems: An extension via adiabatic separation

CHEMICAL PHYSICS LETTERS
  • Kei Moritsugu
  • ,
  • Tohru Terada
  • ,
  • Akinori Kidera

661
開始ページ
279
終了ページ
283
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.1016/j.cplett.2016.08.075
出版者・発行元
ELSEVIER SCIENCE BV

Multiscale enhanced sampling (MSES) calculates the configurational ensemble of all-atom (MM) protein systems with the help of coupling to a coarse-grained (CG) model. Here, for further improvement of the sampling efficiency, the approximation of adiabatic separation was introduced to the original MSES, by adopting a high CG temperature limit. An application to the folding of chignolin in explicit solvent demonstrated that the MSES formula based on adiabatic separation correctly sampled the canonical ensemble with excellent efficiency and robustness against the parameter selection, and thus MSES successfully achieved the scalability for applications to large protein systems. (C) 2016 Elsevier B.V. All rights reserved.

リンク情報
DOI
https://doi.org/10.1016/j.cplett.2016.08.075
Web of Science
https://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=JSTA_CEL&SrcApp=J_Gate_JST&DestLinkType=FullRecord&KeyUT=WOS:000385332600049&DestApp=WOS_CPL
ID情報
  • DOI : 10.1016/j.cplett.2016.08.075
  • ISSN : 0009-2614
  • eISSN : 1873-4448
  • Web of Science ID : WOS:000385332600049

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