KODAKI Tsutomu

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Name
KODAKI Tsutomu
Affiliation
Kyoto University
Section
Institute of Advanced Energy, Advanced Energy Utilization Division
Job title
Associate Professor
Degree
Doctor of Science(Kyoto University)

Research Interests

 
 

Research Areas

 
 

Published Papers

 
Khattab SM, Kodaki T
Journal of microbiology and biotechnology   26(4) 675-683   Apr 2016   [Refereed]
Watanabe S, Kodaki T, Makino K
The Journal of biological chemistry   281(5) 2612-2623   Feb 2006   [Refereed]
Stringent control of intermediary metabolism in Escherichia coli: Pyruvate excretion by cells grown on succinate
T. Kodaki; H. Murakami; M. Taguchi; K. Izui; H. Katsuki
Journal of Biochemistry   90(5) 1437-1444   1981   [Refereed]
T. Kodaki; K. Izui; H. Katsuki
BBA - General Subjects   761(3) 223-230   1983   [Refereed]
H. Sabe; T. Miwa; T. Kodaki; K. Izui; S. Hiraga; H. Katsuki
Gene   31(1-3) 279-283   1984   [Refereed]
Phosphoenolpyruvate carboxylase of Escherichia coli. specificity of some compounds as activators at the site for fructose 1,6-bisphosphate, one of the allosteric effectors2
T. Kodaki; N. Fujita; I. Kameshita; K. Izui; H. Katsuki
Journal of Biochemistry   95(3) 637-642   1984   [Refereed]
S. Ishijima; F. Katagiri; T. Kodaki; K. Izui; H. Katsuki; K. Nishikawa; H. Nakashima; T. Ooi
Biochemical and Biophysical Research Communications   133(2) 436-441   1985   [Refereed]
Cloning of phosphoenolpyruvate carboxylase gene from a cyanobacterium, Anacystis nidulans, in Escherichia coli
T. Kodaki; F. Katagiri; M. Asano; K. Izui; H. Katsuki
Journal of Biochemistry   97(2) 533-539   1985   [Refereed]
K. Fumiaki; K. Tsutomu; F. Nobuyuki; I. Katsura; K. Hirohiko
Gene   38(1-3) 265-269   1985   [Refereed]
J. Nikawa; Y. Tsukagoshi; T. Kodaki; S. Yamashita
European Journal of Biochemistry   167(1) 7-12   1987   [Refereed]
Primary structure and disruption of the phosphatidylinositol synthase gene of Saccharomyces cerevisiae
J. Nikawa; T. Kodaki; S. Yamashita
Journal of Biological Chemistry   262(10) 4876-4881   Apr 1987   [Refereed]
Yeast phosphatidylethanolamine methylation pathway. Cloning and characterization of two distinct methyltransferase genes.
T. Kodaki; S. Yamashita
Journal of Biological Chemistry   262(32) 15428-15435   Nov 1987   [Refereed]
Expression of the Saccharomyces cerevisiae PIS gene and synthesis of phosphatidylinositol in Escherichia coli.
J. Nikawa; T. Kodaki; S. Yamashita
Journal of Bacteriology   170(10) 4727-4731   1988   [Refereed]
T. Kodaki; S. Yamashita
European Journal of Biochemistry   185(2) 243-251   1989   [Refereed]
Cloning and characterization of the yeast CKI gene encoding choline kinase and its expression in Escherichia coli.
K. Hosaka; T. Kodaki; S. Yamashita
Journal of Biological Chemistry   264(4) 2053-2059   Feb 1989   [Refereed]
Repression of choline kinase by inositol and choline in Saccharomyces cerevisiae
K. Hosaka; T. Murakami; T. Kodaki; J.-I. Nikawa; S. Yamashita
Journal of Bacteriology   172(4) 2005-2012   1990   [Refereed]
Regulation of expression of phospholipid-biosynthetic genes in yeast: coordinate repression by inositol and choline
K. Hosaka; T. Kodaki
Seikagaku. The Journal of Japanese Biochemical Society   62(6) 451-456   1990   [Refereed]
Functional analysis of the regulatory region of the yeast phosphatidylserine synthase gene, PSS
T. Kodaki; J.-I. Nikawa; K. Hosaka; S. Yamashita
Journal of Bacteriology   173(24) 7992-7995   1991   [Refereed]
Identification of the upstream activation sequences responsible for the expression and regulation of the PEM1 and PEM2 genes encoding the enzymes of the phosphatidylethanolamine methylation pathway in Saccharomyces cerevisiae
T. Kodaki; K. Hosaka; J. Nikawa; S. Yamashita
Journal of Biochemistry   109(2) 276-287   Feb 1991   [Refereed]
A dominant mutation that alters the regulation of INO1 expression in Saccharomyces cerevisiae
K. Hosaka; J. Nikawa -i.; T. Kodaki; S. Yamashita
Journal of Biochemistry   111(3) 352-358   1992   [Refereed]
Cloning and characterization of the SCS1 gene required for the expression of genes in yeast phospholipid synthesis
K. Hosaka; J. Nikawa -i.; T. Kodaki; S. Yamashita
Journal of Biochemistry   115(1) 131-136   1994   [Refereed]
Cloning and sequence of the SCS3 gene which is required for inositol prototrophy in Saccharomyces cerevisiae
K. Hosaka; J. Nikawa -i.; T. Kodaki; H. Ishizu; S. Yamashita
Journal of Biochemistry   116(6) 1317-1321   1994   [Refereed]
T. Kodaki; R. Woscholski; S. Emr; M.D. Waterfield; P. Nurse; P.J. Parker
European Journal of Biochemistry   219(3) 775-780   Feb 1994   [Refereed]
R. Woscholski; T. Kodaki; M. McKinnon; M.D. Waterfield; P.J. Parker
FEBS Letters   342(2) 109-114   Apr 1994   [Refereed]
T. Kodaki; R. Woscholski; B. Hallberg; P. Rodriguez-Viciana; J. Downward; P.J. Parker
Current Biology   4(9) 798-806   Sep 1994   [Refereed]
T. Kodaki; K. Hosaka; J. Nikawa -i.; S. Yamashita
Journal of Biochemistry   117(2) 362-368   1995   [Refereed]
The lipid kinase activity of the phosphatidylinositol 3-kinase is affected by its intrinsic protein kinase activity
R. Woscholski; T. Kodaki; P.J. Parker
Biochemical Society Transactions   23(1) 14S   1995   [Refereed]
V-Ras activates phosphatidylinositol 3-kinase
T. Kodaki; R. Woscholski; P.J. Parker
Biochemical Society Transactions   23(2) 195S   1995   [Refereed]
R. Woscholski; T. Kodaki; R.H. Palmer; M.D. Waterfield; P.J. Parker
Biochemistry   34(36) 11489-11493   Sep 1995   [Refereed]
"Cloning, characterization, and tissue distribution of rat phospholipase D isoforms"
S. Yamashita, T. Kodaki, K. Katayama
22nd World Congress and Exhibition of the International Society for Fat Research, Malaysia, Sep 8-12, 1997      1997   [Refereed]
T. Kodaki; S. Yamashita
Journal of Biological Chemistry   272(17) 11408-11413   Apr 1997   [Refereed]
Identification of lipid inhibitor of mammalian phospholipase D
K. Kawabe; T. Kodaki; K. Katayama; S.-I. Okamura; M. Mori; S. Yamashita
Journal of Biochemistry   123(5) 870-875   1998   [Refereed]
Cloning, differential regulation and tissue distribution of alternatively spliced isoforms of ADP-ribosylation-factor-dependent phospholipase D from rat liver
K. Katayama; T. Kodaki; Y. Nagamachi; S. Yamashita
Biochemical Journal   329(3) 647-652   1998   [Refereed]
M. Yamada; T. Suzuki; K. Kanaori; K. Tajima; S. Sakamoto; T. Kodaki; K. Makino
Organic Letters   5(18) 3173-3176   Sep 2003   [Refereed]
Enhanced levels of oleate-dependent and arf-dependent phospholipase D isoforms in experimental colon cancer
M. Yoshida; S.-I. Okamura; T. Kodaki; M. Mori; S. Yamashita
Oncology Research   10(8) 399-406   1998   [Refereed]
Differential transcriptional regulation of two distinct S-adenosylmethionine synthetase genes (SAM1 and SAM2) of Saccharomyces cerevisiae.
T. Kodaki; S. Tsuji; N. Otani; D. Yamamoto; K.S. Rao; S. Watanabe; M. Tsukatsune; K. Makino
Nucleic acids research. Supplement (2001)   (3) 303-304   2003   [Refereed]
S. Watanabe; T. Kodaki; K. Makino
Journal of Biological Chemistry   280(11) 10340-10349   Mar 2005   [Refereed]
G. Kagiya; R. Ogawa; M. Hatashita; K. Takagi; T. Kodaki; S. Hiroishi; K. Yamamoto
Journal of Biotechnology   115(3) 239-248   Feb 2005   [Refereed]
K.S. Rao; K. El-Hami; T. Kodaki; K. Matsushige; K. Makino
Journal of Colloid and Interface Science   289(1) 125-131   Sep 2005   [Refereed]
S.P. Pack; M. Nonogawa; T. Kodaki; K. Makino
Nucleic Acids Research   33(18) 5771-5780   2005   [Refereed]
Reaction of NO with Nucleic Acid Bases and its Biological Implication
S.P. Pack, T. Suzuki, H. Ide, T. Kodaki and K. Makino
Frontiers in Organic Chemistry,1,1-45,2005      2005   [Refereed]
L-Arabinose 1-dehydrogenase: Insight of a novel bacterial L-arabinose pathway
S. Watanabe, T. Kodaki and K. Makino
Pacifichem 2005,Hawaii, USA,2005.12.15-20      Dec 2005   [Refereed]
Enhancement of stability and reproducibility of DNA microarray by using novel surface modification and probe modification
N.K. Kamisetty, S.P. Pack, M. Nonogawa, T. Kodaki and K. Makino
Pacifichem 2005,Hawaii, USA,2005.12.15-20      Dec 2005   [Refereed]
Synthesis and physiological activities of novel 6-formylpterin derivatives
M. Nonogawa, T. Arai, S.P. Pack, P. Sommani, N. Endo,T. Kodaki and K. Makino
Pacifichem 2005,Hawaii, USA,2005.12.15-20      Dec 2005   [Refereed]
Protein engineering of xylose metabolizing enzymes: Complete reversal of coenzyme specificity of xylitol dehydrogenase and xylose reductase
T. Kodaki, S. Watanabe and K. Makino
Pacifichem 2005,Hawaii, USA,2005.12.15-20      Dec 2005   [Refereed]
Chemical synthesis and repair response of oligodeoxynucleotide containing oxanine base: A novel NO-induced DNA damage
S.P. Pack, T. Nakano, M. Nonogawa, N.K. Kamisetty, H. Ide, T. Kodaki and K. Makino
Pacifichem 2005,Hawaii, USA,2005.12.15-20      Dec 2005   [Refereed]
Y. Kamisaka; N. Noda; N. Tomita; K. Kimura; T. Kodaki; K. Hosaka
Bioscience, Biotechnology and Biochemistry   70(3) 646-653   Mar 2006   [Refereed]
S. Watanabe; T. Kodaki; K. Makino
Journal of Biological Chemistry   281(39) 28876-28888   Sep 2006   [Refereed]
N.K. Kamisetty; S.P. Pack; M. Nonogawa; K.C. Devarayapalli; T. Kodaki; K. Makino
Analytical and Bioanalytical Chemistry   386(6) 1649-1655   Nov 2006   [Refereed]
M. Nonogawa; T. Arai; N. Endo; S.P. Pack; T. Kodaki; K. Makino
Organic and Biomolecular Chemistry   4(9) 1811-1816   May 2006   [Refereed]
Crystallization and preliminary X-ray diffraction studies of xylitol dehydrogenase, a key enzyme for bioethanol production using yeast
J. Matsui, S. Watanabe, T. Kodaki, B. Mikami and K. Makino
20th IUBMB International Congress of Biochemistry and Molecular Biology,Kyoto Japan,2006.6.18-23      2006   [Refereed]
Improvement of DNA microarray fabrication reproducibility by controlling surface modification
Kamisetty Nagendra Kumar,野々川満,Pack Seung Pil,小瀧努,牧野圭祐,
日本化学会第86春季年会,千葉,2006.3.27-30      2006   [Refereed]
Fabrication of DNA arrayed capillary system for sensitive and selective analysis of DNA
Devarayapalli Kamakshaiah Charyulu,Pack Seung Pil,Kamisetty Nagendra Kumar,野々川満,小瀧努,牧野圭祐
日本化学会第86春季年会,千葉,2006.3.27-30      2006   [Refereed]
Thermodynamic properties and enzymatic responses of oxanine-containing oligonucleotides
Pack Seung Pil,小瀧努,牧野圭祐
日本化学会第86春季年会,千葉,2006.3.27-30      2006   [Refereed]
Improvement of Thermostability of Pichia stipitis Xylitol Dehydrogenase by Protein Engineering
A. Narayana, S. Watanabe, A.S. Ahmed, T. Kodaki and K. Makino
20th IUBMB International Congress of Biochemistry and Molecular Biology,Kyoto Japan,2006.6.18-23      2006   [Refereed]
New Approach for Conversion of Biomass to Ethanol by Recombinant Saccharomyces cerevisiae
A.S. Ahmed, S. Watanabe, A. Narayana, T. Kodaki and K. Makino
20th IUBMB International Congress of Biochemistry and Molecular Biology,Kyoto Japan,2006.6.18-23      2006   [Refereed]
N.K. Kamisetty; S.P. Pack; M. Nonogawa; K.C. Devarayapalli; S. Watanabe; T. Kodaki; K. Makino
Analytical and Bioanalytical Chemistry   387(6) 2027-2035   Mar 2007   [Refereed]
N. Annaluru; S. Watanabe; S.P. Pack; A.A. Saleh; T. Kodaki; K. Makino
Journal of Biotechnology   129(4) 717-722   May 2007   [Refereed]
N.K. Kamisetty; S.P. Pack; M. Nonogawa; K.C. Devarayapalli; T. Kodaki; K. Makino
Chemistry Letters   36(2) 322-323   2007   [Refereed]
K.C. Devarayapalli; S.P. Pack; N.K. Kamisetty; M. Nonogawa; S. Watanabe; T. Kodaki; K. Makino
Analytical and Bioanalytical Chemistry   388(4) 919-928   Jun 2007   [Refereed]
S. Watanabe; A.A. Saleh; S.P. Pack; N. Annaluru; T. Kodaki; K. Makino
Journal of Biotechnology   130(3) 316-319   Jun 2007   [Refereed]
R. Ogawa; G. Kagiya; T. Kodaki; S. Fukuda; K. Yamamoto
BioTechniques   42(5) 628-633   2007   [Refereed]
S. Watanabe; S.P. Pack; A.A. Saleh; N. Annaluru; T. Kodaki; K. Makino
Bioscience, Biotechnology and Biochemistry   71(5) 1365-1369   May 2007   [Refereed]
S.P. Pack; N.K. Kamisetty; M. Nonogawa; K.C. Devarayapalli; K. Ohtani; K. Yamada; Y. Yoshida; T. Kodaki; K. Makino
Nucleic Acids Research   35(17) e110   2007   [Refereed]
S. Watanabe; A.A. Saleh; S.P. Pack; N. Annaluru; T. Kodaki; K. Makino
Microbiology   153(Pt 9) 3044-3054   Sep 2007   [Refereed]
P. Sommani; K. Yamashita; T. Miyoshi; H. Tsunemine; T. Kodaki; H. Mori; K. Hirota; T. Arai; M. Sasada; K. Makino
Biological and Pharmaceutical Bulletin   30(11) 2181-2184   Nov 2007   [Refereed]
S.P. Pack; A. Doi; M. Nonogawa; N.K. Kamisetty; K.C. Devarayapalli; T. Kodaki; K. Makino
Nucleosides, Nucleotides and Nucleic Acids   26(10-12) 1589-1593   2007   [Refereed]
M. Nonogawa; S.P. Pack; T. Arai; N. Endo; P. Sommani; T. Kodaki; Y. Kotake; K. Makino
Organic and Biomolecular Chemistry   5(20) 3314-3319   Oct 2007   [Refereed]
Construction of artificial promoters that are responsive to X- ray irradiation
R Ogawa, S Lee, G Kagiya, H Hirano, S Fukuda, T Kondo , T Kodaki
10th Annual Meeting of American Society of Gene Therapy, Seattle, USA, 2007.5.30-6.3      2007   [Refereed]
Highly efficient bioethanol fermentation from woody biomass (II)
S Watanabe, T Kodaki and K Makino
JSPS-KOSEF Core University Program Joint Seminar between Seoul National University and Kyoto University, Kyoto, Japn, 2007.7.20      2007   [Refereed]
Development of DNA microarray fabrication by efficient surface modification and functional probe design
N.K. Kamisetty,S.P. Pack,野々川満,K.C. Devarayapalli,吉田安子,山田和成,渡邉誠也,小瀧努,牧野圭祐
日本化学会第87春季年会,大阪,2007.3.25-28      2007   [Refereed]
M. Nonogawa; S.P. Pack; T. Arai; N. Endo; P. Sommani; T. Kodaki; K. Makino
Biochemical and Biophysical Research Communications   353(4) 1105-1110   Feb 2007   [Refereed]
R. Ogawa; S.-I. Lee; G. Kagiya; H. Hirano; S. Fukuda; T. Kondo; T. Kodaki
Journal of Gene Medicine   10(3) 316-324   Mar 2008   [Refereed]
A. Matsushika; S. Watanabe; T. Kodaki; K. Makino; S. Sawayama
Journal of Bioscience and Bioengineering   105(3) 296-299   Mar 2008   [Refereed]
A. Matsushika; S. Watanabe; T. Kodaki; K. Makino; H. Inoue; K. Murakami; O. Takimura; S. Sawayama
Applied Microbiology and Biotechnology   81(2) 243-255   Nov 2008   [Refereed]
Development of oligo-DNA coupled micro columns for isolation and detection of DNA oligomers
N K Kamisetty,S P Pack,野々川満,K C Devarayapalli,和田啓男,小瀧努,牧野圭祐
日本化学会第88春季年会,2008      2008   [Refereed]
N.K. Kamisetty; S.P. Pack; M. Nonogawa; K. Yamada; Y. Yoshida; T. Kodaki; K. Makino
Journal of Biotechnology   140(3-4) 242-245   Mar 2009   [Refereed]
A. Matsushika; H. Inoue; S. Watanabe; T. Kodaki; K. Makino; S. Sawayama
Applied and Environmental Microbiology   75(11) 3818-3822   Jun 2009   [Refereed]
A. Matsushika; H. Inoue; T. Kodaki; S. Sawayama
Applied Microbiology and Biotechnology   84(1) 37-53   Aug 2009   [Refereed]
A. Doi; S.P. Pack; T. Kodaki; K. Makino
Journal of Biochemistry   146(2) 201-208   Aug 2009   [Refereed]
S.P. Pack; A. Doi; Y.S. Choi; T. Kodaki; K. Makino
Biochemical and Biophysical Research Communications   391(1) 118-122   Jan 2010   [Refereed]
S.M.R. Khattab; S. Watanabe; M. Saimura; M.M. Afifi; A.-N.A. Zohri; U.M. Abdul-Raouf; T. Kodaki
Green Energy and Technology   66 117-122   2011   [Refereed]
S.M.R. Khattab; S. Watanabe; M. Saimura; T. Kodaki
Biochemical and Biophysical Research Communications   404(2) 634-637   Jan 2011   [Refereed]
T. Nagata; Y. Sakurai; Y. Hara; T. Mashima; T. Kodaki; M. Katahira
FEBS Journal   279(8) 1456-1463   Apr 2012   [Refereed]
S.-H. Lee; T. Kodaki; Y.-C. Park; J.-H. Seo
Journal of Biotechnology   158(4) 184-191   Apr 2012   [Refereed]
A. Furukawa; H. Okamura; R. Morishita; S. Matsunaga; N. Kobayashi; T. Ikegami; T. Kodaki; A. Takaori-Kondo; A. Ryo; T. Nagata; M. Katahira
Biochemical and Biophysical Research Communications   425(2) 284-289   Aug 2012   [Refereed]
T.A. Ngo; E. Nakata; M. Saimura; T. Kodaki; T. Morii
Methods   67(2) 142-150   May 2014   [Refereed]
T. Mashima; F. Nishikawa; Y.O. Kamatari; H. Fujiwara; M. Saimura; T. Nagata; T. Kodaki; S. Nishikawa; K. Kuwata; M. Katahira
Nucleic Acids Research   41(2) 1355-1362   Jan 2013   [Refereed]
S.M.R. Khattab; M. Saimura; T. Kodaki
Journal of Biotechnology   165(3-4) 153-156   Jun 2013   [Refereed]
A. Furukawa; K. Sugase; R. Morishita; T. Nagata; T. Kodaki; A. Takaori-Kondo; A. Ryo; M. Katahira
Angewandte Chemie - International Edition   53(9) 2349-2352   Feb 2014   [Refereed]

Misc

 
“High-level Expression of Soluble Methane Monooxygenase in Escherichia coli”
Megumi Hada, Megumi Utsugi, Takashi Sagawa, Tsutomu Kodaki, Katsutoshi Ohkubo
A Gordon Research Conference, Molecular Basis of Microbial One-carbon Metabolism, Connecticut, U. S. A. (July, 2000)      2000   [Refereed]
A strategy for highly efficient bioethanol production using molecular genetic modified yeast
T. Kodaki,N. Otani,S. Tsuji,T. Yamamoto,Kota S. Rao,M. Tsukatsune,K. Makino
The 1st International Symposium on Sustainable Energy System,Kyoto(日本)      2003   [Refereed]
Transcriptional regulation to adapt to environment changes
T. Kodaki
1st Kyoto-Erlangen Symposium on Advanced Energy and Materials,Nuremberg(ドイツ)      2003   [Refereed]
S.P. Pack; D. Yamamoto; T. Kodaki; K. Makino
Nucleic acids symposium series (2004)   (48) 249-250   2004   [Refereed]
S. Watanabe; T. Kodaki; K. Makino
Nucleic acids symposium series (2004)   (48) 197-198   2004   [Refereed]

Research Grants & Projects

 
Production of High Quality Energy by Biotechnology