KATAYAMA Tsutomu

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Name
KATAYAMA Tsutomu
Affiliation
Kyushu University
Section
Graduate School of Pharmaceutical Sciences
Job title
Professor
Degree
Ph.D.(Kyoto University)

Research Areas

 
 

Academic & Professional Experience

 
1990
 - 
1993
Stanford University School of Medicine,
 
 
   
 
Post-doctoral Fellow
 
1993
 - 
1994
Georgetown University School of Medicine,
 
 
   
 
Post-doctoral Fellow
 
1994
 - 
2001
Kyushu University Graduate School of
 
 
   
 
Pharmaceutical Sciences, Assistant Professor
 
2001
 - 
2002
Kyushu University Graduate School of
 
 
   
 
Pharmaceutical Sciences, Associate Professor
 
2002
   
 
- Kyushu University Graduate School of
 
 
   
 
Pharmaceutical Sciences, Professor
 

Education

 
 
 - 
1985
Faculty of Science, Nagoya University
 
 
 - 
1990
Graduate School, Division of Natural Science, Kyoto University
 

Awards & Honors

 
2009
Arthur Kornberg Memorial Lecture Award, Asia-Pacific International Molecular Biology Network:
 

Published Papers

 
Escherichia coli CrfC protein, a nucleoid partition factor, localizes to nucleoid poles via the activities of specific nucleoid-associated proteins
10 72   Feb 2019   [Refereed]
"F1000Prime Recommended"
Yukari Sakiyama, Masahiro Nishimura, Chihiro Hayashi, Yusuke Akama, Shogo Ozaki, Tsutomu Katayama
Frontiers in Microbiology   9 2017   Aug 2018
Chromosomal replication initiation requires dynamic mechanisms in higher-order nucleoprotein complexes that are constructed at the origin of replication. In Escherichia coli, DnaA molecules construct functional oligomers at the origin oriC, enabli...
Yukari Sakiyama, Kazutoshi Kasho, Yasunori Noguchi, Hironori Kawakami, Tsutomu Katayama
Nucleic Acids Research   45 12354-12373   Dec 2017
In Escherichia coli, the level of the ATP-DnaA initiator is increased temporarily at the time of replication initiation. The replication origin, oriC, contains a duplex-unwinding element (DUE) flanking a DnaAoligomerization region (DOR), which inc...
Yoshito Abe, Seijiro Shioi, Shunsuke Kita, Hikaru Nakata, Katsumi Maenaka, Katsumi Maenaka, Daisuke Kohda, Tsutomu Katayama, Tadashi Ueda
FEBS Letters   591 3805-3816   Nov 2017
The heat shock protein HspQ (YccV) of Escherichia coli has been proposed to participate in the retardation of replication initiation in cells with the dnaA508 allele. In this study, we have determined the 2.5-Å-resolution X-ray structure of the tr...
Kazutoshi Kasho, Hiroyuki Tanaka, Hiroyuki Tanaka, Ryuji Sakai, Tsutomu Katayama
Journal of Biological Chemistry   292 1251-1266   Jan 2017
Timely initiation of replication in Escherichia coli requires functional regulation of the replication initiator, ATP-DnaA. The cellular level of ATP-DnaA increases just before initiation, after which its level decreases through hydrolysis of DnaA...
Jing Zhang, Saki Taniguchi, Hironori Ito, Kazuhiro Iiyama, Madoka Hino, Tsutomu Katayama, Makoto Kimura
Bioscience, Biotechnology and Biochemistry   81 1937-1940   Jan 2017
© 2017 Japan Society for Bioscience, Biotechnology, and Agrochemistry. A toxin-antitoxin system, vp1842/vp1843, locates within a superintegron on the Vibrio parahaemolyticus genome chromosome I whose toxin gene vp1843 encodes a DNA nicking endonuc...
Masayuki Su’etsugu, Hiraku Takada, Tsutomu Katayama, Hiroko Tsujimoto
Nucleic Acids Research   45 11525-11534   Jan 2017
© The Author(s) 2017. Propagation of genetic information is a fundamental property of living organisms. Escherichia coli has a 4.6 Mb circular chromosome with a replication origin, oriC. While the oriC replication has been reconstituted in vitro m...
Masahiro Shimizu, Yasunori Noguchi, Yukari Sakiyama, Hironori Kawakami, Tsutomu Katayama, Shoji Takada
Proceedings of the National Academy of Sciences of the United States of America   113    Dec 2016
Upon DNA replication initiation in Escherichia coli, the initiator protein DnaA forms higher-order complexes with the chromosomal origin oriC and a DNA-bending protein IHF. Although tertiary structures of DnaA and IHF have previously been elucidat...
Yukie Inoue, Hiroyuki Tanaka, Hiroyuki Tanaka, Kazutoshi Kasho, Kazuyuki Fujimitsu, Kazuyuki Fujimitsu, Taku Oshima, Tsutomu Katayama
Genes to Cells   21 1015-1023   Sep 2016
In Escherichia coli, the initiator protein ATP-DnaA promotes initiation of chromosome replication in a timely manner. After initiation, DnaA-bound ATP is hydrolyzed to yield ADP-DnaA, which is inactive in initiation. DnaA-reactivating sequences (D...
Chiemi Gatanaga, Bo Yang, Yuka Inadomi, Kazuteru Usui, Chiyoe Ota, Tsutomu Katayama, Hiroshi Suemune, Mariko Aso
ACS Chemical Biology   11 2216-2221   Aug 2016
We have developed oligodeoxynucleotides (ODNs) that modify primary amines to produce 5,6-dimethoxy 3-methyleneisoindolin-1-one. Compared to the oxygen isosteric fluorophore, 4,5-dimethoxyphthalimide, this methyleneisoindolinone was more stable and...
Noguchi, Y. and Katayama, T.
Front. Microbiol. 7; 239. (21 pages) doi: 10.3389/fmicb.2016.00239   7    Mar 2016   [Refereed]
Kawakami, H., Ohashi, E., Tsurimoto, T., and Katayama, T.
Front. Microbial. 7:521. doi: 10.3389/fmicb.2016.00521      2016   [Refereed]
Lai, P. J., Lim, C. T., Le, H. P., Katayama, T., Leach, D. R. F., Furukohri, A. and Maki, H.
Genes Cells. 21(2);      2016   [Refereed]
Abe, Y., Fujisaki, N., Miyoshi, T., Watanabe, N., Katayama, T., and Ueda, T.
J. Biochem. 159(2); 217-223.      2016   [Refereed]
Noguchi, Y., Sakiyama, Y., Kawakami, H., and Katayama, T.
J. Biol. Chem. 290(33);20295-20312      2015   [Refereed]
Kawakami, H., Ohashi, E., Kanamoto, S., Tsurimoto, T., and Katayama, T.
Sci. Rep. 5; 14929      2015   [Refereed]
Le, H. P., Masuda, Y., Tsurimoto, T., Maki, S., Katayama, T., Furukohri, A., and Maki, H.
Genes Cells 20(10); 817-833      2015   [Refereed]
Aramaki, T., Abe, Y., Furutani, K., Katayama, T., and Ueda, T.
J. Biochem. 157(6);529-537      2015   [Refereed]
Yang, B., Jinnouchi, A., Usui, K., Katayama, T., Fujii, M., Suemune, H., and Aso, M.
Bioconjugate Chem. 26, 1830-1838      2015   [Refereed]
Kazutoshi Kasho, Kazuyuki Fujimitsu, Toshihiro Matoba, Taku Oshima, Tsutomu Katayama
Nucleic Acids Research   42 13134-13149   Dec 2014
In Escherichia coli, the ATP-bound form of DnaA (ATP-DnaA) promotes replication initiation. During replication, the bound ATP is hydrolyzed to ADP to yield the ADP-bound form (ADP-DnaA), which is inactive for initiation. The chromosomal site DARS2...
Ikeda, M., Furukohri, A., Philippin, G., Loechler, E., Tatsumi-Akiyama, M., Katayama, T., Fuchs, R.P., and Maki, H.
Nucleic Acids Res. 42(13):8461-8472      2014   [Refereed]
Fujiyama, S., Abe, Y., Takenawa, T., Aramaki, T., Shioi, S., Katayama, T., and Ueda, T.
Biochim. Biophys. Acta. 1844(2):299-307.      2014   [Refereed]
Fujiyama, S., Abe, Y., Tani, J., Urabe, M., Sato, K., Aramaki, T., Katayama, T., and Ueda, T.
FEBS J. 281(23):5356-5370.      2014   [Refereed]
Su'etsugu M, Harada Y, Keyamura K, Matsunaga C, Kasho K, Abe Y, Ueda T, Katayama T
Environmental microbiology      Apr 2013   [Refereed]
Kasho K, Katayama T
Proceedings of the National Academy of Sciences of the United States of America   110(3) 936-941   Jan 2013   [Refereed]
Ozaki, S., Matsuda, Y., Keyamura, K., Kawakami, H., Noguchi, Y., Kasho, K., Nagata, K., Masuda, T., Sakiyama, Y., and Katayama, T.
Cell Reports 4(5):985-995      2013   [Refereed]
Aramaki, T., Abe,Y., Katayama, T., and Ueda,
Protein Sci. 22(9):1279-1286      2013   [Refereed]
Aramaki, T., Abe,Y. (equal contributors), Ohkuri, T., Mishima T., Yamashita, S., Katayama, T., and Ueda, T
Genes Cells 18(9):723-732.      2013   [Refereed]
Fujiwara, K., Katayama,T., and Nomura, M. S.
Nucleic Acids Res. 41(14):7176-7183.      2013   [Refereed]
Ozaki S, Noguchi Y, Hayashi Y, Miyazaki E, Katayama T
The Journal of biological chemistry   287 37458-37471   Oct 2012   [Refereed]
Ozaki S, Noguchi Y, Nishimura M, Katayama T
Journal of structural biology   179(2) 242-250   Aug 2012   [Refereed][Invited]
Ozaki S, Katayama T
Nucleic acids research   40 1648-1665   Feb 2012   [Refereed]
Keyamura K, Katayama T
The Journal of biological chemistry   286(33) 29336-29346   Aug 2011   [Refereed]
Charbon G, Riber L, Cohen M, Skovgaard O, Fujimitsu K, Katayama T, Løbner-Olesen A
Molecular microbiology   79(4) 914-928   Feb 2011   [Refereed]
Le HT, Gautier V, Kthiri F, Kohiyama M, Katayama T, Richarme G
Biochemical and biophysical research communications   405(1) 52-57   Feb 2011   [Refereed]

Misc

 
Tsutomu Katayama, Kazutoshi Kasho, Hironori Kawakami
Frontiers in Microbiology   8    Dec 2017
© 2017 Katayama, Kasho and Kawakami. This review summarizes the mechanisms of the initiator protein DnaA in replication initiation and its regulation in Escherichia coli. The chromosomal origin (oriC) DNA is unwound by the replication initiation c...
Tsutomu Katayama
Advances in Experimental Medicine and Biology   1042 79-98   Jan 2017
© 2017, Springer Nature Singapore Pte Ltd. The Escherichia coli chromosomal origin consists of a duplex-unwinding region and a region bearing a DNA-bending protein, IHF-binding site, and clusters of binding sites for the initiator protein DnaA. AT...
Skarstad K, Katayama T
Cold Spring Harbor perspectives in biology   5 a012922   Apr 2013   [Refereed][Invited]
Katayama, T., Ozaki, S., Keyamura, K. and Fujimitsu, K.
Nature Rev. Microbiol.   8(3) 163-170   2010
Kawakami, H. and Katayama, T.
Biochem. Cell Biol.   88(1) 49-62   2010
Fujimitsu, K., Senriuchi, T., and Katayama, T.
Genes Dev.   23(10) 1221-1233   2009
Keyamura, K., Abe, Y., Higashi, M., Ueda, T., and Katayama, T
J. Biol. Chem.   284(37) 25038-25050   2009
Ozaki, S., and Katayama, T.
Plasmid   62(2) 71-82   2009
Ozaki, S., Kawakami,H., Nakamura, K., Fujikawa, N., Kagawa, W., Park, S.-Y., Yokoyama, S., Kurumizaka, H., and Katayama, T.
J. Biol. Chem.   283(13) 8351-8362   2008

Works

 
Development of systems screening novel inhibitors for DNA replication
1999

Research Grants & Projects

 
Molecular Mechanism for control of the E.coli chromosomal replication
Mechanism for the check-point regulation that monitors DNA replication
Autibiotics that inhibit DNA replication