Tetsushi Yada

Profile Information

Affiliation: Professor, Faculty of Computer Science and Systems Engineering Department of Bioscience and Bioinformatics, Kyushu Institute of Technology

Degree: 博士（理学）(東京大学)

J-GLOBAL ID: 200901012601418939
researchmap Member ID: 1000367812

Research Interests

Research Areas

Informatics / Biological, health, and medical informatics /

Research History

2017 - 2018

Faculty of Computer Science and Systems Engineering, Kyushu Institute of Technology
2017 - 2018

Graduate School of Computer Science and Systems Engineering, Kyushu Institute of Technology
2017 - 2018

Graduate School of Computer Science and Systems Engineering, Kyushu Institute of Technology
2017 - 2018

School of Computer Science and Systems Engineering, Kyushu Institute of Technology
2007 - 2013

Graduate School of Informatics, Kyoto University
2007 - 2013

Associate Professor
2013

Faculty of Computer Science and Systems Engineering, Department of Bioscience and Bioinformatics, Kyushu Institute of Technology
2013

Professor,Department of Bioscience and Bioinformatics,Faculty of Computer Science and Systems Engineering,Kyushu Institute of Technology
2003 - 2007

Graduate School of Informatics, Kyoto University
2003 - 2007

Associate Professor
2001 - 2003

The Institute of Medical Science, The University of Tokyo
2001 - 2003

Associate Professor
1999 - 2001

理化学研究所ゲノム科学総合研究センター研究員
1999 - 2001

Researcher
1988 - 1999

Mitsubishi Research Institute, Inc.
1988 - 1999

Researcher

Education

- 1988

Department of Biology, School of Sciences, Kyushu University
- 1988

Faculty of Science, Kyushu University

Papers

Dynamical Robustness and Its Structural Dependence in Biological Networks

Natsuhiro Ichinose, Takeshi Kawashima, Tetsushi Yada, Hiroshi Wada

Journal of Theoretical Biology, 110808-110808, Jun, 2021 Peer-reviewed
Micropeptides Encoded in Transcripts Previously Identified as Long Noncoding RNAs: A New Chapter in Transcriptomics and Proteomics.

Fouzia Yeasmin, Tetsushi Yada, Nobuyoshi Akimitsu

Frontiers in genetics, 9 144-144, 2018 Peer-reviewed
Identification of Minimal p53 Promoter Region Regulated by MALAT1 in Human Lung Adenocarcinoma Cells.

Tano K, Onoguchi-Mizutani R, Yeasmin F, Uchiumi F, Suzuki Y, Yada T, Akimitsu N

Frontiers in genetics, 8 208, 2017 Peer-reviewed
Analysis of RNA decay factor mediated RNA stability contributions on RNA abundance.

Maekawa S, Imamachi N, Irie T, Tani H, Matsumoto K, Mizutani R, Imamura K, Kakeda M, Yada T, Sugano S …

BMC genomics, 16(1) 154-154, Mar, 2015 Peer-reviewed
Long Noncoding RNA NEAT1-Dependent SFPQ Relocation from Promoter Region to Paraspeckle Mediates IL8 Expression upon Immune Stimuli.

Katsutoshi I, Imamachi N, Akizuki G, Kumakura M, Kawaguchi A, Nagata K, Kato A, Kawaguchi Y, Sato H, Yoneda M …

Molecular Cell, 53(3) 393-406, Feb, 2014 Peer-reviewed
Tetrahedral Gray Code for Visualization of Genome Information

Natsuhiro Ichinose, Tetsushi Yada, Osamu Gotoh

PLOS ONE, 9(1) e86133, Jan, 2014 Peer-reviewed

Misc.

Oncofetal geneの体系的な探索

原惇史, 水谷玲菜, 秋光信佳, 矢田哲士

生命科学系学会合同年次大会, 2017年度 [1P-0751], Dec, 2017
A new computational method to predict transcriptional activity of a DNA sequence from diverse datasets of massively parallel reporter assays

Ying Liu, Takuma Irie, Tetsushi Yada, Yutaka Suzuki

NUCLEIC ACIDS RESEARCH, 45(13), Jul, 2017
A new computational method to predict transcriptional activity of a DNA sequence from diverse datasets of massively parallel reporter assays

Ying Liu, Takuma Irie, Tetsushi Yada, Yutaka Suzuki

NUCLEIC ACIDS RESEARCH, 45(13), Jul, 2017
Estimating optimal sparseness of developmental gene networks using a semi-quantitative model

Natsuhiro Ichinose, Tetsushi Yada, Hiroshi Wada

PLOS ONE, 12(4), Apr, 2017
Estimating optimal sparseness of developmental gene networks using a semi-quantitative model

Natsuhiro Ichinose, Tetsushi Yada, Hiroshi Wada

PLOS ONE, 12(4), Apr, 2017
次世代型シークエンサーを用いた変異プロモーターの網羅的解析

入江拓磨, 劉瑩, 榊原雄太, 門城拓, 関真秀, 菅野純夫, 矢田哲士, 鈴木穣

日本分子生物学会年会プログラム・要旨集(Web), 39th ROMBUNNO.1P‐0875 (WEB ONLY), 2016
変異導入プロモーターの転写活性データを用いて転写制御コードを解読する

劉瑩, 入江拓磨, 門城拓, 矢田哲士, 鈴木穣

日本生化学会大会・日本分子生物学会年会合同大会講演要旨集, 88回・38回 [4T14L-04(3P0704)], Dec, 2015
次世代型シークエンサーを用いた変異プロモーターの網羅的解析

入江拓磨, 劉瑩, 門城拓, 関真秀, 榊原雄太, 菅野純夫, 矢田哲士, 鈴木穣

日本生化学会大会(Web), 88th 3P0842 (WEB ONLY), 2015
Long Noncoding RNA NEAT1-Dependent SFPQ Relocation from Promoter Region to Paraspeckle Mediates IL8 Expression upon Immune Stimuli (vol 53, pg 393, 2014)

Katsutoshi Imamura, Naoto Imamachi, Gen Akizuki, Michiko Kumakura, Atsushi Kawaguchi, Kyosuke Nagata, Akihisa Kato, Yasushi Kawaguchi, Hiroki Sato, Misako Yoneda …

MOLECULAR CELL, 54(6) 1055-1055, Jun, 2014
次世代シークエンサーによる変異プロモーターの網羅的解析

入江拓磨, 門城拓, 劉エイ, 関真秀, 菅野純夫, 矢田哲士, 鈴木穣

日本分子生物学会年会プログラム・要旨集(Web), 37th 2P-0985 (WEB ONLY), 2014
miRNA-target prediction based on transcriptional regulation

Toyofumi Fujiwara, Tetsushi Yada

BMC GENOMICS, 14, Feb, 2013
miRNA-target prediction based on transcriptional regulation

Toyofumi Fujiwara, Tetsushi Yada

BMC GENOMICS, 14, Feb, 2013
Identification of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability

Hidenori Tani, Naoto Imamachi, Kazi Abdus Salam, Rena Mizutani, Kenichi Ijiri, Takuma Irie, Tetsushi Yada, Yutaka Suzuki, Nobuyoshi Akimitsu

RNA BIOLOGY, 9(11) 1370-1379, Nov, 2012
Identification of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability

Hidenori Tani, Naoto Imamachi, Kazi Abdus Salam, Rena Mizutani, Kenichi Ijiri, Takuma Irie, Tetsushi Yada, Yutaka Suzuki, Nobuyoshi Akimitsu

RNA BIOLOGY, 9(11) 1370-1379, Nov, 2012
超並列シークエンサーを用いたヒト変異プロモーターのハイスループット解析

入江拓磨, 関真秀, 菅野純夫, 矢田哲士

日本分子生物学会年会プログラム・要旨集(Web), 35th 3P-0753 (WEB ONLY), 2012
Large-scale motif discovery using DNA Gray code and equiprobable oligomers

Natsuhiro Ichinose, Tetsushi Yada, Osamu Gotoh

BIOINFORMATICS, 28(1) 25-31, Jan, 2012
Large-scale motif discovery using DNA Gray code and equiprobable oligomers

Natsuhiro Ichinose, Tetsushi Yada, Osamu Gotoh

BIOINFORMATICS, 28(1) 25-31, Jan, 2012
Predicting promoter activities of primary human DNA sequences

Takuma Irie, Sung-Joon Park, Riu Yamashita, Masahide Seki, Tetsushi Yada, Sumio Sugano, Kenta Nakai, Yutaka Suzuki

NUCLEIC ACIDS RESEARCH, 39(11), Jun, 2011
Predicting promoter activities of primary human DNA sequences

Takuma Irie, Sung-Joon Park, Riu Yamashita, Masahide Seki, Tetsushi Yada, Sumio Sugano, Kenta Nakai, Yutaka Suzuki

NUCLEIC ACIDS RESEARCH, 39(11), Jun, 2011
Linear regression models predicting strength of transcriptional activity of promoters.

Yada T, Yoshida K, Morita M, Taniguchi T, Irie T, Suzuki Y

Genome informatics. International Conference on Genome Informatics, 25(1) 53-60, 2011

Works

Research Projects

複雑ネットワークの視点からの新規細胞タイプの進化

科学研究費助成事業, 基盤研究(A), 日本学術振興会, Apr, 2018 - Mar, 2023

和田洋, 矢田哲士, 川島武士, 市瀬夏洋
Algorithms that organisms search genes de novo

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2018 - Mar, 2023
Systematic discovery of short peptide coding ORFs in the human genomes

Grants-in-Aid for Scientific Research, Grant-in-Aid for Challenging Research (Exploratory), Japan Society for the Promotion of Science, Jun, 2017 - Mar, 2019

Yada Tetsushi
Robustness, flexibility and phase transitions of the gene regulatory network.

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Jul, 2015 - Mar, 2019

Wada Hiroshi
次世代シークエンサー解析と情報科学解析で迫る転写調節コードの普遍性と多様性

科学研究費助成事業, 新学術領域研究(研究領域提案型), 日本学術振興会, Apr, 2015 - Mar, 2017

矢田哲士
プロモーター配列の情報科学的解体と再構成による遺伝子回路の設計

科学研究費助成事業, 新学術領域研究(研究領域提案型), 日本学術振興会, Apr, 2014 - Mar, 2016

矢田哲士
Bioinformatics analysis reveals a putative scenario for de novo origination of genes

Grants-in-Aid for Scientific Research, Grant-in-Aid for Challenging Exploratory Research, Japan Society for the Promotion of Science, Apr, 2013 - Mar, 2016

Yada Tetsushi
Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area), Japan Society for the Promotion of Science, Apr, 2010 - Mar, 2016

KOHARA Yuji, KATO Kazuto, TOYODA Atsushi, KUROKI Yoko, SUGANO Sumio, SUZUKI Yutaka, HAYASHI Tetsuya, YAMAMOTO Ken, TSUJI Shoji, INOUE Ituro, KUROKAWA Ken, MORISHITA Shinichi, NAKAMURA Yasukazu, TABATA Satoshi, KUHARA Satoshi, IWASAKI Wataru, SESE Jun, TAKAHASHI Hiroki, ASAI Kiyoshi, KASAHARA Masahiro, SAKAKIBARA Yasubumi, YADA Tetsushi, YAMAGATA Zentaro, MUTO Kaori, IDA Ryuichi, MASUI Tohru, KURIYAMA Mariko, TAKAGI Toshihisa, FUJIYAMA Asao, HATTORI Masahira, OGURA Yoshitoshi, TOKUNAGA Katsushi, KUWANO Ryozo, OHASHI Jun, ITOH Takehiko, HIRAKAWA Hideki, NOGUCHI Hideki, MATSUOKA Satoshi, OGASAWARA Naotake, NAKAMURA Kensuke, HAMADA Michiaki, KANAYA Shigehiko, ANZAI Yuichiro, OKADA Kiyotaka, SAKAKI Yoshiyuki, TAKAKU Fumimaro, TOYOSHIMA Kumao, NAKAMURA Keiko, HOTTA Yoshiki, YONEZAWA Akinori, YOSHIKAWA Hiroshi, YOSHIDA Mitsuaki, INOKO Hidetoshi, TODA Tatsushi, INAZAWA Johji, GOJOBORI Takashi, URUSHIHARA Hideko, TAKEDA Hiroyuki, SHIROISHI Toshihiko, ITOH Takashi, SATOH Noriyuki, MATSUDA Hideo, GOTO Susumu, TSUDA Masataka
Designing promoter sequences

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (A), Japan Society for the Promotion of Science, 2010 - 2012

YADA Tetsushi, SUZUKI Yutaka
Comparative analysis of large scale genome data and knowledge discovery

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research on Priority Areas, Japan Society for the Promotion of Science, 2005 - 2009

YADA Tetsushi
Comparative Genomics Toward Understanding Genomic Bases of Evolution and Bio-Diversity

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research on Priority Areas, Japan Society for the Promotion of Science, 2004 - 2009

FUJIYAMA Asao
The systematic approach for the understanding of dynamic aspects of chromosome VI of S.cerevisiae

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, 2003 - 2005

SHIRAHIGE Katsuhiko
Modeling and prediction of genome sequence information by using information representation models

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research on Priority Areas, Japan Society for the Promotion of Science, 2000 - 2004

YADA Tetsushi, ASAI Kiyoshi
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Research History

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