中村努 (Tsutomu Nakamura) - マイポータル

基本情報

所属: 国立研究開発法人産業技術総合研究所バイオメディカル研究部門細胞分子機能研究グループ

学位: 博士（理学）(京都大学)

J-GLOBAL ID: 200901026530306132
researchmap会員ID: 5000086708

外部リンク: http://www.aist.go.jp/RESEARCHERDB/cgi-bin/worker_detail.cgi?call=namae&rw_id=T66865972

論文

Alteration of molecular assembly of peroxiredoxins from hyperthermophilic archaea

Tsutomu Nakamura, Maki Oshima, Megumi Yasuda, Akiko Shimamura, Junji Morita, Koichi Uegaki

JOURNAL OF BIOCHEMISTRY 162(6) 415-422 2017年12月査読有り
Heat-induced native dimerization prevents amyloid formation by variable domain from immunoglobulin light-chain REI

Marina Nawata, Hirotaka Tsutsumi, Yuta Kobayashi, Satoru Unzai, Shouhei Mine, Tsutomu Nakamura, Koichi Uegaki, Hironari Kamikubo, Mikio Kataoka, Daizo Hamada

FEBS JOURNAL 284(18) 3114-3127 2017年9月査読有り
Substrate recognition of N,N '-diacetylchitobiose deacetylase from Pyrococcus horikoshii

Tsutomu Nakamura, Yasushige Yonezawa, Yuko Tsuchiya, Mayumi Niiyama, Kurumi Ida, Maki Oshima, Junji Morita, Koichi Uegaki

JOURNAL OF STRUCTURAL BIOLOGY 195(3) 286-293 2016年9月査読有り
Multiple crystal forms of N,N '-diacetylchitobiose deacetylase from Pyrococcus furiosus

Tsutomu Nakamura, Mayumi Niiyama, Wakana Hashimoto, Kurumi Ida, Manabu Abe, Junji Morita, Koichi Uegaki

ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS 71 657-662 2015年6月査読有り
Expression from engineered Escherichia coli chromosome and crystallographic study of archaeal N,N '-diacetylchitobiose deacetylase

Shouhei Mine, Mayumi Niiyama, Wakana Hashimoto, Takahisa Ikegami, Daisuke Koma, Takashi Ohmoto, Yohta Fukuda, Tsuyoshi Inoue, Yoshito Abe, Tadashi Ueda …

FEBS JOURNAL 281(11) 2584-2596 2014年6月査読有り
Solution structure of the chitin-binding domain 1 (ChBD1) of a hyperthermophilic chitinase from Pyrococcus furiosus

Shouhei Mine, Tsutomu Nakamura, Takaaki Sato, Takahisa Ikegami, Koichi Uegaki

JOURNAL OF BIOCHEMISTRY 155(2) 115-122 2014年2月査読有り
Structure of peroxiredoxin from the anaerobic hyperthermophilic archaeon Pyrococcus horikoshii

Tsutomu Nakamura, Aika Mori, Mayumi Niiyama, Hiroyoshi Matsumura, Chisa Tokuyama, Junji Morita, Koichi Uegaki, Tsuyoshi Inoue

Acta Crystallographica Section F: Structural Biology and Crystallization Communications 69(7) 719-722 2013年7月査読有り
Characterization and crystal structure of the thermophilic ROK hexokinase from Thermus thermophilus

Tsutomu Nakamura, Yasuhiro Kashima, Shouhei Mine, Takashi Oku, Koichi Uegaki

JOURNAL OF BIOSCIENCE AND BIOENGINEERING 114(2) 150-154 2012年8月査読有り
Expression, refolding, and purification of active diacetylchitobiose deacetylase from Pyrococcus horikoshii

Shouhei Mine, Takahisa Ikegami, Kazunori Kawasaki, Tsutomu Nakamura, Koichi Uegaki

PROTEIN EXPRESSION AND PURIFICATION 84(2) 265-269 2012年8月査読有り
Crystallization and preliminary crystallographic analysis of a putative glucokinase/hexokinase from Thermus thermophilus

Tsutomu Nakamura, Yasuhiro Kashima, Shouhei Mine, Takashi Oku, Koichi Uegaki

ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS 67 1559-1562 2011年12月査読有り
Growth of Protein Crystals by Syringe-Type Top-Seeded Solution Growth

Hiroyoshi Matsumura, Keisuke Kakiniuchi, Tsutomu Nakamura, Shigeru Sugiyama, Mihoko Maruyama, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori

CRYSTAL GROWTH & DESIGN 11(5) 1486-1492 2011年5月査読有り
Crystal structure of the cambialistic superoxide dismutase from Aeropyrum pernix K1-insights into the enzyme mechanism and stability

Tsutomu Nakamura, Kasumi Torikai, Koichi Uegaki, Junji Morita, Kodai Machida, Atsushi Suzuki, Yasushi Kawata

FEBS JOURNAL 278(4) 598-609 2011年2月査読有り
Growth of large protein crystals by a large-scale hanging-drop method

Keisuke Kakinouchi, Tsutomu Nakamura, Taro Tamada, Hiroaki Adachi, Shigeru Sugiyama, Mihoko Maruyama, Yoshinori Takahashi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue …

JOURNAL OF APPLIED CRYSTALLOGRAPHY 43(4) 937-939 2010年8月査読有り
Kinetic and crystallographic analyses of the catalytic domain of chitinase from Pyrococcus furiosus - the role of conserved residues in the active site

Hiroaki Tsuji, Shigenori Nishimura, Takashi Inui, Yuji Kado, Kazuhiko Ishikawa, Tsutomu Nakamura, Koichi Uegaki

FEBS JOURNAL 277(12) 2683-2695 2010年6月査読有り
Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide*

Tsutomu Nakamura, Yuji Kado, Takafumi Yamaguchi, Hiroyoshi Matsumura, Kazuhiko Ishikawa, Tsuyoshi Inoue

JOURNAL OF BIOCHEMISTRY 147(1) 109-115 2010年1月査読有り
Tertiary structure and carbohydrate recognition by the chitin-binding domain of a hyperthermophilic chitinase from Pyrococcus furiosus

Tsutomu Nakamura, Shouhei Mine, Yoshihisa Hagihara, Kazuhiko Ishikawa, Takahisa Ikegami, Koichi Uegaki

JOURNAL OF MOLECULAR BIOLOGY 381(3) 670-680 2008年9月査読有り
Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate

Tsutomu Nakamura, Takahiko Yamamoto, Manabu Abe, Hiroyoshi Matsumura, Yoshihisa Hagihara, Tadashi Goto, Takafumi Yamaguchi, Tsuyoshi Inoue

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105(17) 6238-6242 2008年4月査読有り
The first crystal structure of L-threonine dehydrogenase

Kazuhiko Ishikawa, Noriko Higashi, Tsutomu Nakamura, Takanori Matsuura, Atsushi Nakagawa

JOURNAL OF MOLECULAR BIOLOGY 366(3) 857-867 2007年2月査読有り
Structure of the catalytic domain of the hyperthermophilic chitinase from Pyrococcus furiosus

Tsutomu Nakamura, Shouhei Mine, Yoshihisa Hagihara, Kazuhiko Ishikawa, Koichi Uegaki

ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS 63 7-11 2007年1月査読有り
Crystallization and X-ray diffraction analysis of a catalytic domain of hyperthermophilic chitinase from Pyrococcus furiosus

Shouhei Mine, Tsutomu Nakamura, Kunio Hirata, Kazuhiko Ishikawa, Yoshihisa Hagihara, Koichi Uegaki

ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS 62 791-793 2006年8月査読有り

もっとみる

MISC

Crystallization and X-ray diffraction analysis of a catalytic domain of hyperthermophilic chitinase from Pyrococcus furiosus

Shouhei Mine, Tsutomu Nakamura, Kunio Hirata, Kazuhiko Ishikawa, Yoshihisa Hagihara, Koichi Uegaki

ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS 62(8) 791-793 2006年8月
Crystal structure of thioredoxin peroxidase from aerobic hyperthermophilic archaeon Aeropyrum pernix K1

T Nakamura, T Yamamoto, T Inoue, H Matsumura, A Kobayashi, Y Hagihara, K Uegaki, M Ataka, Y Kai, K Ishikawa

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 62(3) 822-826 2006年2月
Identification of the region responsible for fibril formation in the CAD domain of caspase-activated DNase

T Nakamura, A Kobayashi, Y Hagihara, T Takai, S Mine, T Yamazaki, N Yumoto, K Uegaki

JOURNAL OF BIOCHEMISTRY 138(6) 815-819 2005年12月
Amyloid fibril formation by the CAD domain of caspase-activated DNase

K Uegaki, T Nakamura, H Yamamoto, A Kobayashi, T Odahara, K Harata, Y Hagihara, N Ueyama, T Yamazaki, N Yumoto

BIOPOLYMERS 79(1) 39-47 2005年9月
Crystallization and preliminary X-ray diffraction analysis of thioredoxin peroxidase from the aerobic hyperthermophilic archaeon Aeropyrum pernix K1

T Nakamura, H Matsumura, T Inoue, Y Kai, K Uegaki, Y Hagihara, M Ataka, K Ishikawa

ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS 61(3) 323-325 2005年3月
Crystallization and preliminary X-ray diffraction analysis of the chitin binding domain of hyperthermophilic chitinase from Pyrococcus furiosus

Acta Crystallographica Section F 61(5) 476-478 2005年
Screening for stable mutants with amino acid pairs substituted for the disulfide bond between residues 14 and 38 of bovine pancreatic trypsin inhibitor (BPTI)

Y Hagihara, K Shiraki, T Nakamura, K Uegaki, M Takagi, T Imanaka, N Yumoto

JOURNAL OF BIOLOGICAL CHEMISTRY 277(52) 51043-51048 2002年12月
Thermostable and active phosphoenolpyruvate carboxylase from Thermus sp even after proteolytic cleavage

T Nakamura, K Izui, N Yumoto

JOURNAL OF MOLECULAR CATALYSIS B-ENZYMATIC 17(3-5) 215-222 2002年6月