Arakawa Kazuharu - My portal

Profile Information

Affiliation: Professor, Graduate School of Media and Governance, Keio University

Degree: 政策・メディア(Mar, 2006, Keio University)

Researcher number: 40453550
J-GLOBAL ID: 200901082417103648
researchmap Member ID: 6000007474

External link: http://bioinformatician.org/glab/

Research Interests

Research Areas

Research History

Apr, 2017 - Present

Associate Professor, Faculty of Environment and Information Studies, Keio University
Apr, 2014 - Mar, 2017

Project Associate Professor, Graduate School of Media and Governance, Keio University
Apr, 2009 - Mar, 2014

慶應義塾大学大学院政策・メディア研究科特任講師
Apr, 2009 - Mar, 2014

Project Assistant Professor, Graduate School of Media and Governance, Keio University
Apr, 2007 - Mar, 2009

Research Associate, Graduate School of Media and Governance, Keio University
Apr, 2007 - Mar, 2009

Research Associate, Graduate School of Media and Governance, Keio University

Committee Memberships

Awards

Oct, 2016

Oxford Journals - Japanese Society for Bioinformatics Prize, Multi-omics study of the intracellular dynamics, Japan Society for Bioinformatics

Kazuharu Arakawa
Oct, 2008

Mathup Award 4th: Google Award, Genome Projector

u, ARAKAWA Kazuharu
Oct, 2008

Mathup Award 4th: Google Award, Genome Projector

HARAKAWA Kazuharu, HR
Sep, 2003

CBI学会優秀ポスター賞

HARAKAWA Kazuharu, HR
Sep, 2003

CBI学会優秀ポスター賞

u, ARAKAWA Kazuharu
Mar, 2003

慶應義塾塾長賞, ゲノム解析ソフトウェアG-language

HARAKAWA Kazuharu, HR
Mar, 2003

慶應義塾塾長賞, ゲノム解析ソフトウェアG-language

u, ARAKAWA Kazuharu
Aug, 2002

ISMB Best Poster Award, G-language Genome Analysis Environment

HARAKAWA Kazuharu, HR
Aug, 2002

ISMB Best Poster Award, G-language Genome Analysis Environment

u, ARAKAWA Kazuharu

Papers

Publisher Correction: Base editors for simultaneous introduction of C-to-T and A-to-G mutations (Nature Biotechnology, (2020), 38, 7, (865-869), 10.1038/s41587-020-0509-0)

Sakata R.C, Ishiguro S, Mori H, Tanaka M, Tatsuno K, Ueda H, Yamamoto S, Seki M, Masuyama N, Nishida K …

Nature Biotechnology, 38(7) 901-901, Jul 1, 2020
Complete Genome Sequence of Bifidobacterium longum Strain Jih1, Isolated from Human Feces

Inoue H, Shibata S, Ii K, Inoue J, Fukuda S, Arakawa K

Microbiology Resource Announcements, 9(22), May 28, 2020
Complete genome sequence of halomonas meridiana strain eplume2, isolated from a hydrothermal plume in the northeast pacific ocean

Kurihara Y, Kawai S, Sakai A, Galipon J, Arakawa K

Microbiology Resource Announcements, 9(20), May 14, 2020
Distribution of Macrobiotus shonaicus Stec, Arakawa & Michalczyk, 2018 (Tardigrada: Eutardigrada: Macrobiotidae) in Japan

Sugiura K, Arakawa K, Matsumoto M

Zootaxa, 4767(1) 56-70, Apr 23, 2020
Complete Genome Sequences of Two Cutibacterium acnes Strains Isolated from an Orthopedic Surgical Site

Kaito Seo, Kazuki Tanaka, Shinji Fukuda, Kazuharu Arakawa

Microbiology Resource Announcements, 9(17), Apr 23, 2020
Complete genome sequence of halomonas meridiana strain Slthf1, isolated from a deep-sea thermal vent

Takahashi Y, Takahashi H, Galipon J, Arakawa K

Microbiology Resource Announcements, 9(16), Apr 16, 2020
Complete genome sequence of Bacillus sp. Strain KH172Yl63, isolated from deep-sea sediment

Murai Y, Masuda T, Onuma Y, Evans-Yamamoto D, Takeuchi N, Mori H, Masuyama N, Ishiguro S, Yachie N, Arakawa K

Microbiology Resource Announcements, 9(16), Apr 16, 2020
Complete genome sequence of halomonas hydrothermalis strain slthf2, a halophilic bacterium isolated from a deep-sea hydrothermal-vent environment

Takeyama N, Huang M, Sato K, Galipon J, Arakawa K

Microbiology Resource Announcements, 9(15), Apr 9, 2020
The unique antimicrobial recognition and signaling pathways in tardigrades with a comparison across ecdysozoa

Mapalo M.A, Arakawa K, Baker C.M, Persson D.K, Mirano-Bascos D, Giribet G

G3: Genes, Genomes, Genetics, 10(3) 1137-1148, Mar 1, 2020
Simultaneous metabarcoding of eukaryotes and prokaryotes to elucidate the community structures within tardigrade microhabitats

Arakawa K

Diversity, 12(3), Mar 1, 2020
A new redescription of Richtersius coronifer, supported by transcriptome, provides resources for describing concealed species diversity within the monotypic genus Richtersius (Eutardigrada)

Stec D, Krzywański Ł, Arakawa K, Michalczyk Ł

Zoological Letters, 6(1), Feb 5, 2020
Pre-treatment with D942, a furancarboxylic acid derivative, increases desiccation tolerance in an anhydrobiotic tardigrade Hypsibius exemplaris

Kondo K, Mori M, Tomita M, Arakawa K

FEBS Open Bio, 10(9) 1774-1781, 2020
BioHackathon 2015: Semantics of data for life sciences and reproducible research.

Rutger A Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto …

F1000Research, 9 136-136, 2020
Comparison of the transcriptomes of two tardigrades with different hatching coordination

Yoshida Y, Sugiura K, Tomita M, Matsumoto M, Arakawa K

BMC Developmental Biology, 19(1) 24-24, Dec 9, 2019
AMPK activity is required for the induction of anhydrobiosis in a tardigrade Hypsibius exemplaris, and its potential up-regulator is PP2A

Kondo K, Mori M, Tomita M, Arakawa K

Genes to Cells, 24(12) 768-780, Dec 1, 2019
The bagworm genome reveals a unique fibroin gene that provides high tensile strength

Kono N, Nakamura H, Ohtoshi R, Tomita M, Numata K, Arakawa K

Communications Biology, 2(1) 148, Dec 1, 2019 Peer-reviewed
Orb-weaving spider Araneus ventricosus genome elucidates the spidroin gene catalogue

Kono N, Nakamura H, Ohtoshi R, Moran D, Shinohara A, Yoshida Y, Fujiwara M, Mori M, Tomita M, Arakawa K

Scientific Reports, 9(1) 8380, Dec 1, 2019 Peer-reviewed
Patterns of population structure and complex haplotype sharing among field isolates of the green alga Chlamydomonas reinhardtii

Craig R.J, Böndel K.B, Arakawa K, Nakada T, Ito T, Bell G, Colegrave N, Keightley P.D, Ness R.W

Molecular Ecology, 28(17) 3977-3993, Sep 1, 2019
Complete genome sequence of halophilic deep-sea bacterium halomonas axialensis strain Althf1

Tsurumaki M, Deno S, Galipon J, Arakawa K

Microbiology Resource Announcements, 8(31), Aug 1, 2019
Complete genome sequence of halomonas sulfidaeris strain esulfide1 isolated from a metal sulfide rock at a depth of 2,200 meters, obtained using nanopore sequencing

Saito M, Nishigata A, Galipon J, Arakawa K

Microbiology Resource Announcements, 8(23), Jun 6, 2019

Misc.

Base editors for simultaneous introduction of C-to-T and A-to-G mutations

Sakata R.C, Ishiguro S, Mori H, Tanaka M, Tatsuno K, Ueda H, Yamamoto S, Seki M, Masuyama N, Nishida K …

Nature Biotechnology, 38(7) 901-901, 2020
Tardigrades in space

Arakawa K, Blaxter M

Biologist, 65(1) 14-17, Feb, 2018

Books and Other Publications

オープンソースで学ぶバイオインフォマティクス

HARAKAWA Kazuharu, HR (Role: Joint author, 250)

Tokyo Denki University Press, Mar, 2008 (ISBN: 4501622601)
RとBioconductorを用いたバイオインフォマティクス

HARAKAWA Kazuharu, HR (Role: Joint translator)

シュプリンガー・ジャパン, Jul, 2007 (ISBN: 9784431734642)
Automatic reconstruction of cell-wide metabolic pathway models from the genome

HARAKAWA Kazuharu, HR

慶應義塾大学湘南藤沢学会, Apr, 2006 (ISBN: 4877621571)

Presentations

複製によって形成されたバクテリアゲノム構造の解析

HARAKAWA Kazuharu, HR

日本進化学会, Aug 3, 2010
G-language Bookmarklet: a gateway for Semantic Web, Linked Data, and Web Services

HARAKAWA Kazuharu, HR

Bioinformatics Open Source Conference, Jul 9, 2010
The tardigrade genome of an anhydrobiotic extremotolerant species, Ramazzottius varieornatus

Kunieda T, Kuwahara H, Horikawa DD, Toyoda A, Katayama T, HArakawa K, HR, Shin-I T, Ohishi K, Motoyama A, Aizu T, Kohara Y, Fujiyama A

11th International Symposium on Tardigrada, Aug, 2009
Draft genome sequence assembly and preliminary annotations of Ramazzottius varieornatus genome

Katayama T, HArakawa K, HR, Hasebe Y, Kido N, Kunieda T, Toyoda A, Shin-I T, Horikawa DD, Kuwahara H, Ohishi K, Motoyama A, Aizu T, Kanehisa M

11th International Symposium on Tardigrada, 2009, Aug, 2009
Comparative metabolome profiling of active and anhydrobiotic states of Tardigrade Ramazzottius varieornatus

HARAKAWA Kazuharu, HR, Ito T, Kunieda T, Horikawa D, Soga T, Tomita

ISEPEP3, Aug, 2009
The tardigrade genome of an anhydrobiotic extremotolerant species, Ramazzottius varieornatus

Kunieda T, Kuwahara H, Horikawa DD, Toyoda A, Katayama T, Arakawa K, Shin-I T, Ohishi K, Motoyama A, Aizu T, Kohara Y, Fujiyama A

ISEPEP3, Aug, 2009
Comparative metabolome profiling of active and anhydrobiotic states of Tardigrade Ramazzottius varieornatus

u, ARAKAWA Kazuharu, Ito T, Kunieda T, Horikawa D, Soga T, Tomita

ISEPEP3, Aug, 2009
G-language Genome Analysis Environment Version 2: Integrated workbench for computational genome sequence analysis

HARAKAWA Kazuharu, HR, TOMITA Masaru

ISMB 2009, Jul, 2009
Web Service Interface for G-language Genome Analysis Environment

HARAKAWA Kazuharu, HR, Kido N, Oshita K, Tomita M

BOSC 2009, Jun, 2009
仮説推論・検証型生命情報科学のためのソフトウェアとインタフェース - G-language・GEM System・Genome Projector・E-Cell 3D -

HARAKAWA Kazuharu, HR

第一回生命情報科学若手の会, Apr, 2009
G-language Project:BioHackathon 2009のサマリー

HARAKAWA Kazuharu, HR

第１１回オープンバイオ研究会, Mar, 2009

Teaching Experience

115

Apr, 2024 - Mar, 2025

SYSTEMS OF LIFE (Keio University)
Apr, 2024 - Mar, 2025

SPECIAL RESEARCH PROJECT B (Keio University)
Apr, 2024 - Mar, 2025

SOIL BIORESOURCE SCIENCE (Keio University)
Apr, 2024 - Mar, 2025

SEMINAR B (Keio University)
Apr, 2024 - Mar, 2025

MICROBIOLOGY (Keio University)
Apr, 2024 - Mar, 2025

MASTER SEMINAR (Keio University)
Apr, 2024 - Mar, 2025

INTRODUCTION TO JAPANOLOGY (Keio University)
Apr, 2024 - Mar, 2025

INDEPENDENT RESEARCH (Keio University)
Apr, 2024 - Mar, 2025

GRADUATION PROJECT 2 (Keio University)
Apr, 2024 - Mar, 2025

GRADUATION PROJECT 1 (Keio University)
Apr, 2024 - Mar, 2025

GENOME ENGINEERING LABORATORY (Keio University)
Apr, 2024 - Mar, 2025

GENETICS (Keio University)
Apr, 2024 - Mar, 2025

GENERAL TECHNOLOGY (Keio University)
Apr, 2024 - Mar, 2025

FOOD MICROBIOLOGY (Keio University)
Apr, 2024 - Mar, 2025

ENVIRONMENT AND INFORMATION STUDIES (Keio University)
Apr, 2024 - Mar, 2025

ECONOMICS OF FOOD SYSTEM (Keio University)
Apr, 2024 - Mar, 2025

BASIC ECOLOGY (Keio University)
Apr, 2024 - Mar, 2025

ADVANCED RESEARCH(SYSTEMS BIOLOGY) (Keio University)
Apr, 2024 - Mar, 2025

ACADEMIC PROJECT(ADVANCED BIOSCIENCES B) (Keio University)
Apr, 2024 - Mar, 2025

ACADEMIC PROJECT(ADVANCED BIOSCIENCES A) (Keio University)

Professional Memberships

2004 - Present

オープンバイオ研究会
2001 - Present

International Society for Computational Biology
1999 - Present

日本バイオインフォマティクス学会
1999 - Present

日本分子生物学会
Dec, 2008 - 2014

生命情報科学若手の会

Works

Research Projects

クマムシ特異的非ドメイン型タンパク質の探索と機能解析

Grant-in-Aid for Scientific Research, 学術変革領域研究(A), MEXT,JSPS, Sep, 2021 - Mar, 2026

荒川和晴
マルチオミクス解析によるクマムシ乾眠機構の全体像の解明

Grant-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), MEXT,JSPS, Apr, 2017 - Mar, 2021

荒川和晴