小杉俊一 (Shunichi Kosugi) - マイポータル

基本情報

所属: 情報・システム研究機構データサイエンス共同利用基盤施設ゲノムデータ解析支援センター特任准教授

学位: 農学(筑波大学)

J-GLOBAL ID: 200901014905950982
researchmap会員ID: 5000066312

研究分野

ライフサイエンス / ゲノム生物学 /

経歴

2023年6月 - 現在

国立遺伝学研究所, 統合研究コアデータ解析室, 特任准教授

学歴

1986年 - 1991年

筑波大学, 農学研究科, 応用生物化学専攻
1982年 - 1986年

筑波大学, 第二学群生物学類

論文

TRsv: simultaneous detection of tandem repeat variations, structural variations, and short indels using long read sequencing data

Shunichi Kosugi, Chikashi Terao

Genome Biology 26 246 2025年8月査読有り筆頭著者責任著者
Decoding triancestral origins, archaic introgression, and natural selection in the Japanese population by whole-genome sequencing.

Xiaoxi Liu, Satoshi Koyama, Kohei Tomizuka, Sadaaki Takata, Yuki Ishikawa, Shuji Ito, Shunichi Kosugi, Kunihiko Suzuki, Keiko Hikino, Masaru Koido …

Science advances 10(16) eadi8419 2024年4月19日査読有り
Comparative evaluation of SNVs, indels, and structural variations detected with short- and long-read sequencing data.

Shunichi Kosugi, Chikashi Terao

Human genome variation 11(1) 18-18 2024年4月17日査読有り筆頭著者責任著者
Detection of trait-associated structural variations using short-read sequencing.

Shunichi Kosugi, Yoichiro Kamatani, Katsutoshi Harada, Kohei Tomizuka, Yukihide Momozawa, Takayuki Morisaki, Chikashi Terao

Cell genomics 3(6) 100328-100328 2023年6月14日査読有り筆頭著者
Variant spectrum of von Hippel-Lindau disease and its genomic heterogeneity in Japan.

Kenji Tamura, Yuki Kanazashi, Chiaki Kawada, Yuya Sekine, Kazuhiro Maejima, Shingo Ashida, Takashi Karashima, Shohei Kojima, Nickolas F Parrish, Shunichi Kosugi …

Human molecular genetics 32(12) 2046-2054 2023年6月5日査読有り
Genome features of common vetch (Vicia sativa) in natural habitats.

Kenta Shirasawa, Shunichi Kosugi, Kazuhiro Sasaki, Andrea Ghelfi, Koei Okazaki, Atsushi Toyoda, Hideki Hirakawa, Sachiko Isobe

Plant direct 5(10) e352 2021年10月査読有り
Whole genome sequencing of 45 Japanese patients with intellectual disability.

Chihiro Abe-Hatano, Aritoshi Iida, Shunichi Kosugi, Yukihide Momozawa, Chikashi Terao, Keiko Ishikawa, Mariko Okubo, Yasuo Hachiya, Hiroya Nishida, Kazuyuki Nakamura …

American journal of medical genetics. Part A 185(5) 1468-1480 2021年5月査読有り
Prevalence and Spectrum of Pathogenic Germline Variants in Japanese Patients With Early-Onset Colorectal, Breast, and Prostate Cancer.

Xiaoxi Liu, Sadaaki Takata, Kyota Ashikawa, Tomomi Aoi, Shunichi Kosugi, Chikashi Terao, Nicholas F Parrish, Koichi Matsuda, Hidewaki Nakagawa, Yoichiro Kamatani …

JCO precision oncology 4 183-191 2020年11月査読有り
Endogenization and excision of human herpesvirus 6 in human genomes.

Xiaoxi Liu, Shunichi Kosugi, Rie Koide, Yoshiki Kawamura, Jumpei Ito, Hiroki Miura, Nana Matoba, Motomichi Matsuzaki, Masashi Fujita, Anselmo Jiro Kamada …

PLoS genetics 16(8) e1008915 2020年8月査読有り
tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing.

Lorena de la Fuente, Ángeles Arzalluz-Luque, Manuel Tardáguila, Héctor Del Risco, Cristina Martí, Sonia Tarazona, Pedro Salguero, Raymond Scott, Alberto Lerma, Ana Alastrue-Agudo …

Genome biology 21(1) 119-119 2020年5月18日査読有り
A novel PAK3 pathogenic variant identified in two siblings from a Japanese family with X-linked intellectual disability: case report and review of the literature.

Aritoshi Iida, Kyoko Takano, Eri Takeshita, Chihiro Abe-Hatano, Shinichi Hirabayashi, Yuji Inaba, Shunichi Kosugi, Yoichiro Kamatani, Yukihide Momozawa, Michiaki Kubo …

Cold Spring Harbor molecular case studies 5(6) 2019年12月査読有り
Comprehensive evaluation of structural variation detection algorithms for whole genome sequencing.

Shunichi Kosugi, Yukihide Momozawa, Xiaoxi Liu, Chikashi Terao, Michiaki Kubo, Yoichiro Kamatani

Genome biology 20(1) 117-117 2019年6月3日査読有り筆頭著者
A novel intragenic deletion in OPHN1 in a Japanese patient with Dandy-Walker malformation.

Aritoshi Iida, Eri Takeshita, Shunichi Kosugi, Yoichiro Kamatani, Yukihide Momozawa, Michiaki Kubo, Eiji Nakagawa, Kenji Kurosawa, Ken Inoue, Yu-Ichi Goto

Human genome variation 6 1-1 2019年査読有り
Host specialization of the blast fungus Magnaporthe oryzae is associated with dynamic gain and loss of genes linked to transposable elements.

Kentaro Yoshida, Diane G O Saunders, Chikako Mitsuoka, Satoshi Natsume, Shunichi Kosugi, Hiromasa Saitoh, Yoshihiro Inoue, Izumi Chuma, Yukio Tosa, Liliana M Cano …

BMC genomics 17 370-370 2016年5月18日査読有り
Sequencing and comparative analyses of the genomes of zoysiagrasses.

Hidenori Tanaka, Hideki Hirakawa, Shunichi Kosugi, Shinobu Nakayama, Akiko Ono, Akiko Watanabe, Masatsugu Hashiguchi, Takahiro Gondo, Genki Ishigaki, Melody Muguerza …

DNA research : an international journal for rapid publication of reports on genes and genomes 23(2) 171-80 2016年4月査読有り
[Rice breeding based on whole genome sequencing using next-generation sequencer].

Akira Abe, Hiroki Takagi, Satoshi Natsume, Hiroki Yaegashi, Hideko Kikuchi, Kentaro Yoshida, Shunichi Kosugi, Hiromasa Saitoh, Naoya Urasaki, Hideo Matsumura …

Seikagaku. The Journal of Japanese Biochemical Society 88(1) 44-53 2016年2月査読有り
GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or long-read alignments.

Shunichi Kosugi, Hideki Hirakawa, Satoshi Tabata

Bioinformatics (Oxford, England) 31(23) 3733-41 2015年12月1日査読有り筆頭著者責任著者
MutMap accelerates breeding of a salt-tolerant rice cultivar.

Hiroki Takagi, Muluneh Tamiru, Akira Abe, Kentaro Yoshida, Aiko Uemura, Hiroki Yaegashi, Tsutomu Obara, Kaori Oikawa, Hiroe Utsushi, Eiko Kanzaki …

Nature biotechnology 33(5) 445-9 2015年5月査読有り
A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly.

Hideki Nishikawa, Takuro Iijima, Rei Kajitani, Junichi Yamaguchi, Toshiya Ando, Yutaka Suzuki, Sumio Sugano, Asao Fujiyama, Shunichi Kosugi, Hideki Hirakawa …

Nature genetics 47(4) 405-9 2015年4月査読有り
Whole genome sequencing to identify genes and QTL in rice

Ryohei Terauchi, Akira Abe, Hiroki Takagi, Muluneh Tamiru, Rym Fekih, Satoshi Natsume, Hiroki Yaegashi, Shunichi Kosugi, Hiroyuki Kanzaki, Hideo Matsumura …

Advances in the Understanding of Biological Sciences Using Next Generation Sequencing (NGS) Approaches 33-42 2015年1月1日査読有り

もっとみる

MISC

次世代シーケンサーを用いた新たな原因遺伝子同定法 : イネ有用遺伝子領域同定への応用

寺内良平, 阿部陽, 高木宏樹, 小杉俊一, 吉田健太郎, 夏目俊, 八重樫弘樹, 八重樫弘樹, 神崎洋之, 松村英生

化学と生物 51(6) 351-354 2013年6月1日
Identification of genomic regions linked to phenotype by whole genome sequencing of bulked DNA in rice

Akira Abe, Shunichi Kosugi, Kentaro Yoshida, Tamiru Muluneh, Hiroki Takagi, Satoshi Natsume, Tsutomu Sasaki, Ryohei Terauchi

GENES & GENETIC SYSTEMS 86(6) 412-412 2011年12月
Identifying rice genes by WGS: use of large scale mutant lines and RILs

Ryohei Terauchi, Akira Abe, Shun-ichi Kosugi, Kentaro Yoshida, Satoshi Natsume, Hiroki Takagi, Hiroyuki Kanzaki, Hideo Matsumura, Kakoto Yoshida, Chikako Mitsuoka …

GENES & GENETIC SYSTEMS 86(6) 382-382 2011年12月
Identification of domesticated genomic regions in rice based on population genomic analysis

Tomoyuki Kado, Eriko Sasaiu, Kentaro Yoshida, Jeffrey A. Fawcett, Ryuichi Sugino, Shohei Takuno, Shunichi Kosugi, Satoshi Natsume, Chikako Mitsuoka, Aiko Uemura …

GENES & GENETIC SYSTEMS 86(6) 438-438 2011年12月
Enhanced sensitivity to R.solani in TEIL-suppressed transgenic tobacco.

Tadaharu Hibi, Shunichi Kosugi, Motoshige Kawata, Shigemi Seo, Lchiro Mitsuhara, Yuko Ohashi

PLANT AND CELL PHYSIOLOGY 48 S164-S164 2007年

書籍等出版物

植物ゲノム機能のダイナミズム - 転写因子による発現の制御 - / 病害応答にかかわる転写因子

2001年

小杉俊一

基本情報

研究分野

経歴

学歴

論文

MISC

書籍等出版物

メニュー

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