Akifumi Shimizu

Profile Information

Affiliation: Associate Professor, School of Environmental Science, Department of Biological Resources Management, Laboratry of Plant Genetics and Breeding, The University of Shiga Prefecture

Degree: Ph.D(Agriculture)(Kyoto University)

J-GLOBAL ID: 200901039262125175
researchmap Member ID: 5000067267

External link: http://www.eonet.ne.jp/~vor-dem-gesetz/index.html

Research Interests

Research Areas

Environmental science/Agricultural science / Plant genetics and breeding /

Committee Memberships

2008

日本育種学会幹事(2008-)

Papers

How can plant nutrition contribute to solving soil problems in tropical Asia?

Masaru KOBAYASHI, Hiroyuki KOYAMA, Toshihiro WATANABE, Eriko MAEJIMA, Anongnat SRIPRACHOTE, Kumiko OCHIAI, Akifumi SHIMIZU, Motohiko KONDO, Yoshiko IIZUMI, Takeshi WATANABE …

Jap. J. Soil Sci.Plant Nutri,, 88(4) 346-351, 2017 Invited
IV-3 熱帯アジア地域の問題土壌と農業生産連続無施肥水田を利用した、イネ収量形質の全ゲノム関連解析（シンポジウム，2016年度佐賀大会）

清水顕史

日本土壌肥料学会講演要旨集, 62 208-208, 2016
Metal accumulation by Arabidopsis halleri subsp gemmifera at a limestone mining site

Aki Kosugi, Jun Tamaru, Kazumi Gotou, Hazuka Y. Furihata, Akifumi Shimizu, Akira Kawabe, Emiko Harada

AUSTRALIAN JOURNAL OF BOTANY, 63(1-2) 134-140, 2015 Peer-reviewed
Genome-wide marker development for the wheat D genome based on single nucleotide polymorphisms identified from transcripts in the wild wheat progenitor Aegilops tauschii.

Julio Cesar, Masaru Iehisa, Akifumi Shimizu, Kazuhiro Sato, Ryo Nishijima, Kouhei Sakaguchi, Ryusuke Matsuda, Shuhei Nasuda, Shigeo Takumi

Theor. Appl. Genet., 127(261) 271, 2014
Discovery of high-confidence SNPs from large-scale de novo analysis of leaf transcripts of Aegilops tauschii, a wild wheat progenitor.

Julio Cesar, Masaru Iehisa, Akifumi Shimizu, Kazuhiro Sato, Shuhei Nasuda, Shigeo Takumi

DNA Research, 19 487-497, 2012
Suppression of a NAC-Like Transcription Factor Gene Improves Boron-Toxicity Tolerance in Rice

Kumiko Ochiai, Akifumi Shimizu, Yutaka Okumoto, Toru Fujiwara, Toru Matoh

PLANT PHYSIOLOGY, 156(3) 1457-1463, Jul, 2011 Peer-reviewed

Misc.

The shoot is important for high-affinity, nitrate uptake in Egeria densa, a submerged vascular plant

TAKAYANAGI Shu, TAKAGI Yuma, SHIMIZU Akifumi, HASEGAWA Hiroshi

Journal of plant research, 125(5) 669-678, Sep 1, 2012
OryzaExpress: An Integration Database for Functional Annotations and Gene Expression Networks in Rice

Hamada Kazuki, Yokoyama Kouji, Tsuchida Hiroko, Sano Kazumi, Mochizuki Takako, Oki Nobuhiko, Horiuchi Youko, Fujita Masahiro, Watanabe Masao, Matsuoka Makoto …

Plant and Cell Physiology Supplement, 2011 826-826, Mar 11, 2011
OryzaExpress: An Integrated Database of Gene Expression Networks and Omics Annotations in Rice

Kazuki Hamada, Kohei Hongo, Keita Suwabe, Akifumi Shimizu, Taishi Nagayama, Reina Abe, Shunsuke Kikuchi, Naoki Yamamoto, Takaaki Fujii, Koji Yokoyama …

PLANT AND CELL PHYSIOLOGY, 52(2) 220-229, Feb, 2011
OryzaExpress:イネの遺伝子発現ネットワークとオミックス情報統合データベース

濱田和輝, 本郷耕平, 諏訪部圭太, 清水顕史, 長山大志, 阿部伶奈, 菊地俊介, 山本直樹, 藤井貴朗, 横山幸治 …

育種学研究, 13, 2011
GENE DISCOVERY METHODS FROM LARGE-SCALE GENE EXPRESSION DATA

Akifumi Shimizu, Kentaro Yano

QUANTUM BIO-INFORMATICS III: FROM QUANTUM INFORMATION TO BIO-INFORMATICS, 26(489) 489-+, 2010
GENE DISCOVERY METHODS FROM LARGE-SCALE GENE EXPRESSION DATA

Akifumi SHIMIZU, Kentaro YANO

QUANTUM BIO-INFORMATICS, III(489) 496, 2010
Rapid Construction of a High-Density Rice Linkage Map by High Efficiency Genome Scanning (HEGS) System

Akifumi SHIMIZU, Shinji KAWASAKI

Rice Science, 16(4) 247-253, Dec, 2009
Rapid Construction of a High-Density Rice Linkage Map by High Efficiency Genome Scanning (HEGS) System

Akifumi SHIMIZU, Shinji KAWASAKI

Rice Science, 16(4) 247-253, Dec, 2009
Changes in the Gene Expression of the White Rot Fungus Phanerochaete chrysosporium Due to the Addition of Atropine

Masahiko Minami, Kazumi Suzuki, Akifumi Shimizu, Tomohiro Hongo, Takaiku Sakamoto, Naoki Ohyama, Hironori Kitaura, Akiho Kusaka, Kenji Iwama, Toshikazu Irie

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY, 73(8) 1722-1731, Aug, 2009
Changes in the Gene Expression of the White Rot Fungus Phanerochaete chrysosporium Due to the Addition of Atropine

Masahiko Minami, Kazumi Suzuki, Akifumi Shimizu, Tomohiro Hongo, Takaiku Sakamoto, Naoki Ohyama, Hironori Kitaura, Akiho Kusaka, Kenji Iwama, Toshikazu Irie

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY, 73(8) 1722-1731, Aug, 2009
QTL analysis of genetic tolerance to iron toxicity in rice (Oryza Sativa L.) by quantification of bronzing score

Akifumi Shimizu

Journal of New Seeds, 10(3) 171-179, Jul, 2009
QTL analysis of genetic tolerance to iron-toxicity in rice (Oryza sativa L.) by quantification of bronzing score.

Shimizu A

Journal of New Seeds, 10(3) 171-179, 2009
Genetic analysis of root elongation induced by phosphorus deficiency in rice (Oryza sativa L.): fine QTL mapping and multivariate analysis of related traits

Akifumi Shimizu, Kenji Kato, Akiko Komatsu, Keiji Motomura, Hiroshi Ikehashi

THEORETICAL AND APPLIED GENETICS, 117(6) 987-996, Oct, 2008
Genetic analysis of root elongation induced by phosphorus deficiency in rice (Oryza sativa L.): fine QTL mapping and multivariate analysis of related traits

Akifumi Shimizu, Kenji Kato, Akiko Komatsu, Keiji Motomura, Hiroshi Ikehashi

THEORETICAL AND APPLIED GENETICS, 117(6) 987-996, Oct, 2008
イネのホウ素過剰害耐性遺伝子の単離

落合久美子, 清水顕史, 奥本裕, 間藤徹

日本土壌肥料学会講演要旨集, 54 88, Sep 9, 2008 Peer-reviewed
Boron toxicity in rice (Oryza sativa L.). I. Quantitative trait locus (QTL) analysis of tolerance to boron toxicity

K. Ochiai, S. Uemura, A. Shimizu, Y. Okumoto, T. Matoh

THEORETICAL AND APPLIED GENETICS, 117(1) 125-133, Jun, 2008
Boron toxicity in rice (Oryza sativa L.). I. Quantitative trait locus (QTL) analysis of tolerance to boron toxicity

K. Ochiai, S. Uemura, A. Shimizu, Y. Okumoto, T. Matoh

THEORETICAL AND APPLIED GENETICS, 117(1) 125-133, Jun, 2008
イネのホウ素過剰害機構の解明とホウ素過剰耐性遺伝子の単離

OCHIAI KUMIKO, SHIMIZU AKIFUMI, UEMURA TATSUICHI, OKUMOTO YUTAKA, MATO TOORU

日本土壌肥料学会講演要旨集, 52 56, Sep 5, 2006
A new method for gene discovery in large-scale microarray data

K Yano, K Imai, A Shimizu, T Hanashita

NUCLEIC ACIDS RESEARCH, 34(5) 1532-1539, 2006
A new method for gene discovery in large-scale microarray data

K Yano, K Imai, A Shimizu, T Hanashita

NUCLEIC ACIDS RESEARCH, 34(5) 1532-1539, 2006

Books and Other Publications

Proceedings of the Final International Meeting for 21th Century Center for Excellence (COE) Program, “Development of New Bioremediation Systems of Acid Sulfate Soil for Agriculture and Forestry"

SHOUKADOH Book Sellers, 2008 (ISBN: 9784879746085)
Brassicas and Legumes. From Genome Structure to Breeding . Biotechnology in Agriculture and Forestry , Vol. 52

Springer, 2003 (ISBN: 9783540427285)

Professional Memberships

Research Projects

低肥料で持続可能なイネ生産に役立つ遺伝子探索と、深層学習による新形質分類法の確立

科学研究費助成事業, 基盤研究(C), 日本学術振興会, Apr, 2021 - Mar, 2024

清水顕史
Study of rice genetic loci and their interactions, which contributes to the breakthrough of the limit of yield at low-fertilizer environment.

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (C), Japan Society for the Promotion of Science, Apr, 2018 - Mar, 2021

Shimizu Akifumi
Genome wide analysis for breeding of tolerant rice cultivars to unfertilized paddy field.

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (C), Japan Society for the Promotion of Science, Apr, 2014 - Mar, 2017

shimizu akifumi
Isolation and functional analysis of acid soil tolerance genes in rice, which are useful for genome based breeding of environmentally sustainable varieties.

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (C), Japan Society for the Promotion of Science, 2010 - 2012

SHIMIZU Akifumi
大規模EST情報からの遺伝子発現パターンを利用した有用遺伝子の探索手法の開発

科学研究費補助金, 2007 - 2008
地力窒素と土壌固定リンの吸収能力に優れたイネの選抜と育種

受託研究, 2008
酸性適応植物の分子生物学的解析

科学技術振興調整費による中核的研究拠点（ＣＯＥ）育成, 2003 - 2007
環境保全型農業のための、イネのリン欠乏ストレス応答形質の単離と機能解析

科学研究費補助金, 2007
Molecular biological analysis of acid soil adapted plants

SCF System for Establishment and Support of Center's of Excellence, 2003 - 2006

Profile Information

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Research Areas

Committee Memberships

Papers

Misc.

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Professional Memberships

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