KISHINO Hirohisa

J-GLOBAL         Last updated: Apr 25, 2019 at 09:41
 
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Name
KISHINO Hirohisa
E-mail
kishinolbm.ab.a.u-tokyo.ac.jp
Affiliation
The University of Tokyo
Section
Graduate School of Agricultural and Life Sciences, Agricultural and Environmental Biology
Job title
Proefessor
Degree
Ms. Science(The University of Tokyo), Dr. Science(Kyushu University)

Research Areas

 
 

Academic & Professional Experience

 
1980
 - 
1990
The Institute of Statistical Mathematics,
 
 
   
 
      Assistant Professor
 
1990
 - 
1993
The Ocean Research Institute, University of
 
 
   
 
      Tokyo, Associate Professor
 
1993
 - 
1999
Graduate School of Arts and Sueras,
 

Education

 
 
 - 
1980
Graduate School, Division of Natural Science, The University of Tokyo
 
 
 - 
1978
Faculty of Science, The University of Tokyo
 

Committee Memberships

 
1999
   
 
the Society for Molecular Biology and Evolution  
 
1988
   
 
International Biometric Society  
 
1999
 - 
2004
Biometric Society of Japan  director
 
1990
   
 
The Behaviormetric Society of Japan  
 
1980
   
 
Japan Statistical Society  
 

Awards & Honors

 
1996
Hayashi Award (The Behaviormetric Society of Japan)
 
2000
The best paper award (Genome Informatic Workshop 2000)
 
2002
The Best Presentation Award (Society of Evolutionary Studies, Japan)
 

Published Papers

 
Renormalized basal metabolic rate describes human aging process and longevity
Kitazoe, Y., Kishino, H., Tanisawa, T., Udaka, K. and Tanaka, M.
Aging Cell   accepted    2019   [Refereed]
Stochastic variational inference for Bayesian phylogenetics: A case of CAT model
Dang, T. T. and Kishino, H.
Molecular Biology and Evolution   36(4) 825-833   Apr 2019   [Refereed]
Rigorous monitoring of a large-scale marine stock enhancement program demonstrates the need for comprehensive management of fisheries and nursery habitat.
Kitada, S., Nakajima, K., Hamasaki, K., Shishidou, H., Waples, R., and Kishino, H.
Scientific Reports   9:5290    2019   [Refereed]
Comparative analysis of farmers engaged in participatory research to cope with climate change versus non-participants in Northeast Thailand.
Suwanmontri,P., Kamoshita,A., Jongdee, B., Fukai, S., and Kishino, H.
Plant Production Science   21 287-301   Jul 2018   [Refereed]
A new approach for comprehensively describing heterogametic sex chromosomes.
Li, S., Ajimura, M., Chen, Z., Liu, J., Chen, E., Guo, H., Tadapatri, V., Reddy, C. G., Zhang, J., Kishino, H., Abe, H., Xia, Q., Arunkumar, K. P., and Mita, K.
DNA Research   25 375-382   2018   [Refereed]
Wu, J., Yonezawa, T., and Kishino, H.
Current Biology   27 3025-3033   Oct 2017   [Refereed]
Genomic adaptation to polyphagy and insecticides in a major East Asian noctuid pest
Cheng, T, Wu, J., Wu, Y., Chilukuri, R., Huang, L., Yamamoto, K., Feng, L., Li, W., Chen, Z., Guo, H., Liu, J., Li, S., Wang, X., Peng, L., Liu, D., Guo, Y., Fu, B., Li, Z., Liu, C., Chen, Y., Tomar, A., Hilliou, F., Montagne, N., Jacquin-Joly, E., d'Alencon, E., Seth, R., Bhatnagar, R., Jouraku, A., Shiotsuki, T., Kadono-Okuda, K., Promboon, A., Smagghe, G., Arunkumar, K., Kishino, H., Goldsmith, M., Feng, Q., Xia, Q., and Mita, K.
Nature Ecology and Evolution   1 1747-1756   Nov 2017   [Refereed]
Guo, H., Cheng, T., Chen, Z., Jiang, L., Guo, Y., Liu, J., Li, S., Taniai, K., Asaoka, K., Kadono-Okuda, K., Arunkumar, K. P., Wu, J., Kishino, H., Zhang, H., Seth, R. K., Gopinathan, K. P., Montagne, N., Jacquin-Joly, E., Goldsmith, M. R., Xia, Q., and Mita, K.
Insect Biochem Mol Biol   82 74-82   Mar 2017   [Refereed]
Population structure and persistence of Pacific herring following the Great Tohoku earthquake.
Kitada, S., Yoshikai, R., Fujita, T., Hamasaki, K., Nakamichi, R., and Kishino, H.
Conservation Genetics   18 423-437   Mar 2017   [Refereed]
Kitada, S., Nakamichi, R., and Kishino, H.
Molecular Ecology Resources   17 1210-1222   Nov 2017   [Refereed]
Yonezawa, T., Segawa, T., Mori, H., Campos, P. F., Hongoh, Y., Endo, H., Akiyoshi, A., Kohno, N., Nishida, S., Wu, J., Jin, H., Adachi, J., Kishino, H., Kurokawa, K., Nogi, Y., Tanabe, H., Mukoyama, H., Yoshida, K., Rasoamiaramanana, A., Yamagishi, S., Hayashi, Y., Yoshida, A., Koike, H., Akishinonomiya, F., Willerslev, E. and Hasegawa, M.
Current Biology   27 68-77   Jan 2017   [Refereed]
Liao, H.-I., Chen, H. and Kishino, H., and Liao, C-T.
Journal of Agricultural, Biological, and Environmental Statistics   accepted    Oct 2016   [Refereed]
Lee, H-J., Kishino, H., Rodrigue, N., and Thorne, J. L.
Philosophical Transactions of Royal Society B   371 20150141   Jun 2016   [Refereed]
Chen, H., Nagai, S., and Kishino, H.
Pacific Conservation Biology.   22 61-71   Mar 2016   [Refereed]
Jin, H., Yonezawa, T., Zhong, Y., Kishino, H., and Hasegawa, M.
Genes & Genetic Systems   accepted    2016   [Refereed]
Chen, H. and Kishino, H.
PLoS ONE   10(10) e0141117   Oct 2015   [Refereed]
Chen, H. and Kishino, H.
Ecology and Evolution   5(19) 4455-4465   Oct 2015   [Refereed]
KISHINO Hirohisa
the Journal of Marine Science and Technology   accepted    Apr 2015   [Refereed]
Miyashita, S., Ishibashi, K., Kishino, H., and Ishikawa, M.
PLoS Biology   13(3) e1002094   Mar 2015   [Refereed]
Chen, H., Shao, K-T., and Kishino, H.
Molecular Ecology   24 759-770   Jan 2015   [Refereed]
Chen, H., Yamagishi, J., and Kishino, H.
PLoS ONE   9(11) e112785   Oct 2014   [Refereed]
Koyano,H., Tsubouchi, T., Kishino, H., and Akutsu, T.
Journal of Geophysical Research G   119 1770-1788   Aug 2014   [Refereed]
Machida, J., Nishiyama, T., Kishino, H., Yamaguchi, S., Kimura, M., Shibata, A., Tatematsu, T., Kamamoto, M., Yamamoto, K., Makino, S., Miyachi, H., Shimozato, K., Tokita, Y.
Clinical Genetics   88 167-171   Jul 2014   [Refereed]
Nishiyama, T., Suzuki, M., Adachi, K., Sumi, S., Okada, K., Kishino, H., Sakai, S., Kamio, Y., Kojima, M., Suzuki, S., Kanne, S. M.
Journal of Autism and Developmental Disorders.   44(5) 993-1007   May 2014   [Refereed]
Koshiba, M., Kakei, H., Honda, M., Karino, G., Niitsu, M., Miyaji, T., Kishino, H., Nakamura, S., Kunikata, T., and Yamanouchi, H.
Behavioural Brain Research.   276 143-150   May 2014   [Refereed]
Nakajima, K., Kitada, S., Habara, Y., Sano, S., Yokoyama, E., Sugaya, T., Iwamoto, W., Kishino, H., and Hamasaki, K.
Canadian Journal of Fisheries and Aquatic Sciences.   71 1-14   Jan 2014   [Refereed]
Mimura, K., Kishino, H., Karino, G., Nitta, E., Senoo, A., Ikegami, K., Kunikata, T.,Yamanouchi, H., Nakamura, S., and Koshiba, M.
Behavioural Brain Research   276 181-189   2014   [Refereed]
Hong, B., Fisher, T., Sult, T., Maxwell, C., Mickelson, J., Kishino, H., and Locke, M.
Journal of Agricultural and Food Chemistry.   62 9916-9926   2014   [Refereed]
Koshiba, M., Senoo, A., Mimura, K., Shirakawa, Y., Karino, G., Obara, S., Ozawa, S., Sekihara, H., Fukushima, Y., Ueda, T., Kishino, H., Tanaka, T., Ishibashi, H., Yamanouchi, H., Yui, K., and Nakamura, S.
Scientific Reports   3(article number 2630)    Aug 2013   [Refereed]
Koyano, H., Serbezov, D., Kishino, H., and Schweder, T.
Journal of Theoretical Biology   336 18-35   Jun 2013   [Refereed]
Bizinoto, M. C., Yabe, S., Leal, É., Kishino, H., de Oliveira Martins, L., de Lima, M., L., Morais, E., R., Diaz, R. S., and Janini, L. M.
BMC Infectious Diseases   13 173   Apr 2013   [Refereed]
Watabe, T. and Kishino, H.
Molecular Biology and Evolution   30 2714-2722   2013   [Refereed]
Tanabe,K., Jombart, T., Horibe, S., Nirianne M. Q. Palacpac, N. M. Q., Honma, H., Tachibana, S., Nakamura, M., Horii, T., Kishino, H., and Mita, T.
Mitochondrion   13 630-636   2013   [Refereed]
Kitada, S., Fujikake, C., Asakura, Y., Yuki, H., Nakajima, K., Vargas, K. M., Kawashima, S., Hamasaki, K., and Kishino, H.
Conservation Genetics   14(3) 717-733   2013   [Refereed]
Ishibashi, K., Mawatari, N., Miyashita, S., Kishino, H., Meshi, T., and Ishikawa, M.
PLoS Pathogen   8(10) e1002975   Oct 2012   [Refereed]
Mollah, M. M. H., Mollah, M. N. H., and Kishino, H.
BMC Bioinformatics.   13 135   Jun 2012   [Refereed]
Nishiyama, T., Kishino, H., Suzuki, S., Ando, R., Niimura, H., Uemura, H., Horita, M., Ohnaka, K., Kuriyama, N., Mastuo, K., Guang, Y., Wakai, K., Hamajima, N., and Tanaka, H.
PLoS ONE   7(4) 35000   Mar 2012   [Refereed]
Mariadassou, M., Bar-Hen, A., and Kishino, H.
Systematic Biology.   61 337-345   Mar 2012   [Refereed]
Guo, Y., Shen, Y-H., Sun, W., Kishino, H., Xiang, Z-H., and Zhang, Z.
Journal of Insect Science   11:119    2011   [Refereed]
Nishiyama, T., Takahashi, K., Tango, T., Pinto, D., Scherer, S. W., Takami, S., and Kishino, H.
BMC Bioinformatics   12:205    2011   [Refereed]
Kitazoe, Y., Kishino, H., Hasegawa, M., Matsui, A., Lane, N., and Tanaka, M.
Genome Biology and Evolution.   3 1233-1244   2011   [Refereed]
Kitada, S., Kishino, H., and Hamasaki, K.
Canadian Journal of Fisheries and Aquatic Sciences   accepted.    2011   [Refereed]
de Oliveira Martins, L. and Kishino, H.
Annals of the Institute of Statistical Mathematics.   62(1) 145-159   2010   [Refereed]
Sawai, H., Otani, H., Arisue, N., Palacpac, N., de Oliveira Martins, L., Pathirana, S., Handunnetti, S., Kawai, S., Kishino, H., Horii, T., and Tanabe, K.
BMC Evolutionary Biology   10 52.   2010   [Refereed]
Watabe, T. and Kishino, H.
Molecular Biology and Evolution.   27(8) 1782-1791   2010   [Refereed]
Koyano, H. and Kishino, H.
Physical Review E.   81(6,Pt.1) 061912   2010   [Refereed]
Tanabe, K., Mita, T., Jombart, T., Eriksson, A., Palacpac, N., Ranford-Cartwright, L., Sawai, H., Sakihama, N., Horibe, S., Ohmae, H., Nakamura, M., Ferreira, M. U., Escalante, A. A., Prugnolle, F., Björkman, A., Färnert, A., Akira Kaneko, A., Horii, T., Manica, A., Kishino, H., and Balloux, F.
Current Biology.   20 1283-1289.   2010   [Refereed]
Choi, S. C., Stone, E. A., Kishino, H., and Thorne, J. L.
Gene   441(1-2) 45-52   2009   [Refereed]
Kitada, S., Shishidou, H., Sugaya, T., Kitakado, T., Hamasaki, K., and Kishino, H.
Aquaculture   290 69-79   2009   [Refereed]
Koyano, H. and Kishino, H.
J. Japanese Statistical Society.   39 77–88.   2009   [Refereed]
Li, Z-W., Li, X., Yu, Q-Y., Xiang, Z-H., Kishino, H., and Zhang, Z.
BMC Evolutionary Biology.   9 215.   2009   [Refereed]
Nishiyama, T., Notohara, M., Sumi, S., Takami, S., and Kishino, H.
Journal of Human Genetics.   54 721-726   2009   [Refereed]
Kitazoe, Y., Kishino, H., Hasegawa, M., Nakajima, N., Thorne, J. L., and Tanaka, M.
PLoS ONE.   3(10) e3343   2008   [Refereed]
de Oliveira Martins, L., Leal, ´E. and Kishino, H.
PLoS ONE   3(7) e2651   2008   [Refereed]
O’Loughlin, S. M., Okabayashi, T., Honda, M., Kitazoe, Y., Kishino, H., Somboon, P., Sochantha, T., Nambanya, S., Saikia, P. K., Dev, V., and Walton, C.
Journal of Evolutionary Biology.   21 1555-1569.   2008   [Refereed]
Kawaoka. S., Hayashi, N., Katsuma, S., Kishino, H., Kohara, Y., Mita, K., and Shimada, T.
Insect Biochem. Mol. Biol.   38(12) 1058-1065   2008   [Refereed]
Seo, T.-K. and Kishino, H.
Systematic Biology.   57(3) 367-377   2008   [Refereed]
Waddell, P. J., Kishino, H., and Ota, R.
Molecular Biology and Evolution   24(3) 650-659   2007   [Refereed]
Kitazoe, Y., Kishino, H., Waddell, P. J., Nakajima, N., Okabayashi, T., Watabe, T., and Okuhara, Y.
PLoS ONE   4 e384   2007   [Refereed]
Watabe,T., Kishino, H., Martins, L. O., and Kitazoe, Y.
Molecular Biology and Evolution,   24 1627—1638   2007   [Refereed]
Thorne, J. L., Choi, S. C., Yu, J., Higgs, P. G., and Kishino, H.
Molecular Biology and Evolution   24 1667—1677   2007   [Refereed]
Choi, S. C., Hobolth, A., Robinson, D. M., Kishino, H., and Thorne, J. L.
Molecular Biology and Evolution   24 1769—1782   2007   [Refereed]
Tanabe, K., Escalante, A., Sakihama, N., Hondac, M., Arisue, N., Horii, T., Culleton, R., Hayakawa, T., Hashimoto, T., Longacre, S., Pathirana, S., Handunnetti, S., and Kishino, H.
Molecular & Biochemical Parasitology   156 74—79.   2007   [Refereed]
Kitada, S., Kitakado, T., and Kishino, H.
Genetics   177(2) 861-873   2007   [Refereed]
Watabe, T., Kishino, H., Okuhara,Y., and Kitazoe, Y.
Genetics   172(3) 1385-1396   2006   [Refereed]
Kitada, S. and Kishino, H.
Fisheries Research   80 101-112   2006   [Refereed]
Okabayashi, T., Kitazoe, Y., Kishino, H., Watabe, T.,Nakajima, N., Okuhara, Y., O'Loughlin, S., and Walton, C.
BMC Evolutionary Biology   6 41   2006   [Refereed]
Kakizawa, S., Oshima, K., Jung, H-Y., Suzuki, S, Nishigawa, H., Arashida, R., Miyata, S., Ugaki, M., Kishino, H., and Namba, S.
Journal of Bacteriology   188(9) 3424-3428   2006   [Refereed]
Kitakado, T., Kitada, S., Kishino, H., and Skaug, H. J.
Genetics   173(4) 2073-2082   2006   [Refereed]
Zhang, Z., Luo, Z., Kishino, H., and Kearsey, M. J.
Molecular Biology and Evolution.   22 501–505   2005   [Refereed]
Kitazoe, Y., Kishino, H., Okabayashi, T., Watabe, T., Nakajima, N., Okuhara, Y., and Kurihara, Y.
Molecular Biology and Evolution.   22 704–715   2005   [Refereed]
2005.
Saldamando C. I., Miyaguchi, S., Tatsuta, H., Kishino, H., Bridle, J. R., and R. K. Butlin.
Journal of Evolutionary Biology.   18 703–712   2005   [Refereed]
2005.
Seo, T.-K., Kishino, H., and Thorne, J. L.
Proceedings of National Academy of Sciences, USA.   102(12) 4436-4441   2005   [Refereed]
2005.
Zhang, Z. and Kishino, H.
Molecular Biology and Evolution.   21 222-227   2004   [Refereed]
Seo, T.-K., Kishino, H., and Thorne, J. L.
Molecular Biology and Evolution.   21 1201-1213   2004   [Refereed]
2004.
Zhang, Z. and Kishino, H.
Genetics.   166 1995-1999   2004   [Refereed]
2004.
Kitada, S. and Kishino, H.
Genetics.   167 2003-2013   2004   [Refereed]
2004.
Robinson, D. M., Jones, D. T., Kishino, H., Goldman, N., and Thorne, J. L.
Molecular Biology and Evolution.   20 1692-1704   2003   [Refereed]
Zhang, Z., Inomata, N., Yamazaki, Y., and Kishino, H.
Journal of Molecular Evolution.   57 702-709   2003   [Refereed]
Hasegawa, M., Thorne, J. L., and Kishino, H.
Genes & Genetic Systems   78(4) 267-283   2003   [Refereed]
Chujo, A., Zhang, Z., Kishino, H., Shimamoto, K., and Kyozuka, J.
Plant Cell Physiol   44(12) 1311-1319   2003   [Refereed]
Wiegmann, B. M., Yeates, D. K., Thorne, J. L., and Kishino, H.
Systematic Biology.   52 745-756   2003   [Refereed]
A viral sampling design for testing the molecular clock and for estimating evolutionary rates and divergence times
Seo, T.-K., Thorne, J. L., Hasegawa, M., and Kishino, H.
Bioinformatics   18 115–123   2002   [Refereed]
Estimation of effective population size of HIV–1 within a host: A pseudo-maximum likelihood approach
Seo, T.-K., Thorne, J. L., Hasegawa, M., and Kishino, H.
Genetics   160 1283–1293   2002   [Refereed]
Winter sightings of humpback and Bryde’s whales in tropical waters of western and central North Pacific
Ohizumi, H., Matsuishi, T., and Kishino, H.
Aquatic Mammals   28 73-77   2002   [Refereed]
Thorne, J. L. and Kishino, H.
Systematic Biology   51 689–702   2002   [Refereed]
Waddell, P. J., Kishino, H., and Ota, R.
Genome Informatics Series.   13 82-92   2002   [Refereed]
Performance of a divergences time estimation method under a probabilistic model of rate evolution
Kishino, H., Thorne, J. L., and Bruno, W. J.
Molecular Biology and Evolution   18 352-361   2001   [Refereed]
Resolving of closely linked quantitative trait loci with a genetic algorithm
Nakamichi, R., Ukai, Y., and Kishino, H.
Genetics   158 463-475   2001   [Refereed]
Waddell, P. J., Kishino, H., and Ota, R.
Genome Informatics Series   12 141–155   2001   [Refereed]
Yamashita,H., Kishino, H., Hanyu, K., Hayashi, C. and Abe, K.
Resources, Conservation and Recycling   28(1/2) 85-104   2000   [Refereed]
Appropriate likelihood ratio tests and marginal distributions for evolutionary tree models with constraints on parameters
Ota, R., Waddell, P., Hasegawa, M., Shimodaira, H. and Kishino, H.
Molecular Biology and Evolution   17 798-803   2000   [Refereed]
Comparing the likelihood functions of phylogenetic trees
Bar-Hen, A. and Kishino, H.
Annals of the Institute of Statistical Mathematics   52 43-56   2000
Hanyu, K., Kishino, H., Yamashita, H. and Hayashi, C.
Resources, Conservation and Recycling   30(3) 177-199   2000   [Refereed]
Empirical Bayes procedure for estimating genetic distance between populations and effective population size
Kitada, S., Hayashi, T. and Kishino, H.
Genetics   156 2063-2079   2000   [Refereed]
Rapid evaluation of the phylogenetic congruence of sequence data using likelihood ratio tests
Waddell, P. J., Kishino, H., and Ota, R.
Molecular Biology and Evolution   17 1988-1992   2000   [Refereed]
Waddell, P. J. and Kishino, H.
Genome Informatics Series   11 129-140   2000   [Refereed]

Books etc

 
Encyclopedia of Bioinformatics and Computational Biology
Mariadassou, M, Bar-Hen, A. and Kishino, H. (Part:Contributor, Tree Evaluation and Robustness Testing)
Academic Press   2019   
Statistical Methods in Molecular Evolution
Thorne, J. L. and Kishino, H. (Part:Contributor, Estimation of divergence times from molecular sequence data. In “Statistical Methods In Molecular Evolution” (Nielsen, R. ed.).)
Springer-Verlag   2005   
Estimation of divergence times from molecular sequence data. In “Statistical Methods In Molecular Evolution” (Nielsen, R. ed.).
Springer-Verlag(Thorne, J. L. and Kishino, H.)   2005   
2005.

Works

 
Activation of Local Regions and Survey of Fishermen's Households
1993
Comparative study of recycling societies
1995
Family, Community and Welfare in the City
1996
Development and optimization of cluster analysis and graphical modeling for the analysis of microarray data
1999 - 2000
Modeling evolution of rate of evolution and genome analysis
2000

Research Grants & Projects

 
Development of high-resolution inference procedure in molecular biogeography
JSPS: Grant-in-Aid for Scientific Research
Project Year: Apr 2016 - Mar 2019    Investigator(s): KISHINO Hirohisa
Development of a graphical model and a tolerance region for the assessment of physiological process and ecological diversity
JSPS: Grant-in-Aid for Scientific Research
Project Year: Apr 2013 - Mar 2016    Investigator(s): KISHINO Hirohisa
Development of models in statistical genetics with spatio-temporal priors
JSPS: Grants-in-Aid for Scientific Research
Project Year: Apr 2010 - Mar 2013    Investigator(s): KISHINO Hirohisa
Statistical genetic modelling of the emergence and dynamics of resistant alleles
JSPS: Grant-in-Aid for Scientific Research
Project Year: Apr 2007 - Mar 2009    Investigator(s): KISHINO Hirohisa
To quantify the fitness and the cost of the viral escape from the immune system, we describe the binding ability between the viral proteins and the antibody and between the viral protein and the host receptor in the form of log likelihood ratios o...
Development of hierarchical models and procedures of genome evolution and mapping
JST: BIRD
Project Year: Oct 2001 - Sep 2004    Investigator(s): KISHINO Hirohisa